.chat-5 (in-progress · ⌁50) 6d [turn 0]
.chat-4 (in-progress · ⌁50) 7d [turn 0]
review-zoom-v9-slide06a-q-axis-kbp (done · →256k ←36k ◎4.9M §752k · ⌁100) 4d
└→ review-zoom-v9-fanin-render (done · →520k ←33k ◎6.1M §156k · ⌁100) 4d ✉4 ←──────────┐
review-zoom-v9-leiden-figure-slide (done · →215k ←18k ◎2.2M §261k · ⌁100) 4d ──────────┤
review-zoom-v9-labels-superpop-stats-polish (done · →156k ←59k ◎11M §506k · ⌁100) 4d ──┤
review-zoom-v9-slide10m2-better-3d-viz (done · →771k ←42k ◎12M §510k · ⌁50) 4d ────────┤
review-zoom-v9-broom-jaccard-method-slides (done · →224k ←24k ◎5.2M §241k · ⌁100) 4d ──┘
review-zoom-v5-copy-number-enrichment-inventory (done · →248k ←35k ◎8.0M §703k · ⌁100) 5d
├→ review-zoom-v5-copy-number-enrichment-figures (done · →367k ←50k ◎7.5M §464k · ⌁100) 5d
│ └→ review-zoom-v5-enrichment-fanin-render (done · →1.0M ←40k ◎11M §228k · ⌁100) 5d ✉2 ←────────────────────┐
│ └→ review-zoom-v5-phr-jaccard-method-slide (done · →306k ←35k ◎8.0M §314k · ⌁50) 5d │
│ └→ review-zoom-v5-pggb-gfalook-2d-render (done · →220k ←46k ◎6.7M §229k) 5d │
│ └→ review-zoom-v6-dipc-validation-slides (done · →470k ←55k ◎9.7M §386k · ⌁50) 5d │
│ └→ review-zoom-v6-pggb-graph-black (done · →312k ←35k ◎4.2M §215k) 5d │
│ └→ review-zoom-v6-community-assignment-method-slide (done · →306k ←42k ◎7.5M §258k · ⌁50) 5d │
│ ├→ review-zoom-v7-gene-enrichment-report-backed (done · →166k ←35k ◎6.5M §296k · ⌁50) 5d ──────┼ ──┐
│ ├→ review-zoom-v7-hic-3d-plots (done · →359k ←32k ◎6.8M §359k · ⌁50) 5d ───────────────────────┼ ──┤
│ ├→ review-zoom-v7-hic-mapq0-method-slide (done · →287k ←35k ◎5.7M §645k · ⌁50) 5d ─────────────┼ ──┤
│ ├→ review-zoom-v7-slide06a-length-histogram-restore (done · →228k ←26k ◎3.3M §446k · ⌁50) 5d ──┼ ──┤
│ ├→ review-zoom-v7-slide08b-nearest-superpop-mds (done · →782k ←38k ◎7.9M §441k · ⌁50) 5d ──────┼ ──┤
│ ├→ review-zoom-v7-slide09-community-mds-layout (done · →379k ←33k ◎4.7M §568k · ⌁50) 5d ───────┼ ──┤
│ └→ review-zoom-v7-fanin-render (done · →451k ←38k ◎6.5M §267k · ⌁50) 5d ───────────────────────┼ ←─┘
│ ├→ review-zoom-v8-chm13-ucsc-example-selection (done · →570k ←40k ◎13M §389k · ⌁50) 5d ──────┼ ──┐
│ ├→ review-zoom-v8-hic-dipc-clarity-split (done · →785k ←66k ◎16M §595k · ⌁100) 5d ───────────┼ ──┤
│ ├→ review-zoom-v8-mds-superpop-community-polish (done · →1.0M ←44k ◎15M §560k · ⌁100) 5d ────┼ ──┤
│ ├→ review-zoom-v8-slide06a-length-alternatives (done · →378k ←43k ◎5.5M §599k · ⌁100) 5d ────┼ ──┤
│ ├→ review-zoom-v8-typography-legend-cleanup (done · →1.1M ←63k ◎15M §349k · ⌁50) 5d ─────────┼ ──┤
│ └→ review-zoom-v8-fanin-render (done · →767k ←43k ◎6.8M §330k · ⌁100) 5d ────────────────────┼ ←─┘
└→ review-zoom-v5-copy-number-enrichment-narrative (done · →156k ←24k ◎2.9M §267k · ⌁50) 5d ─────────────────┤
review-zoom-v5-07a-tree-community-heatmaps (done · →321k ←56k ◎7.6M §739k · ⌁50) 5d ✉2 ──────────────────────┘
meiosis-prophase-fish-background-review-deck (done · →577k ←57k ◎14M §382k · ⌁50) 5d ↩5
chm13-phr-ucsc-browser-suite (done · →316k ←47k ◎7.6M §718k · ⌁100) 5d
review-zoom-git-provenance-audit (done · →202k ←32k ◎7.3M §92k · ⌁50) 6d
├→ review-zoom-03b-erdos-renyi (done · →225k ←20k ◎2.4M §464k · ⌁50) 6d ────────────────┐
├→ review-zoom-04-hprcv2-karyogram (done · →133k ←22k ◎2.2M §175k · ⌁50) 6d ────────────┤
├→ review-zoom-06-length-redesign (done · →386k ←40k ◎5.4M §421k · ⌁50) 6d ─────────────┤
├→ review-zoom-07a-heatmap-tree-pq (done · →376k ←42k ◎5.4M §398k · ⌁50) 6d ────────────┤
├→ review-zoom-07b-tree-complete-unrooted (done · →458k ←38k ◎6.5M §392k · ⌁50) 6d ─────┤
├→ review-zoom-08b-superpop-dispersion (done · →372k ←41k ◎9.9M §710k · ⌁50) 6d ────────┤
├→ review-zoom-09-mds-community-leading (done · →444k ←30k ◎6.1M §549k · ⌁50) 6d ───────┤
├→ review-zoom-14-gene-background (done · →190k ←24k ◎3.7M §329k · ⌁50) 6d ─────────────┤
├→ review-zoom-14-gene-enrichment-or4f (done · →683k ←39k ◎11M §524k · ⌁50) 6d ─────────┤
├→ review-zoom-density-methods-narrative (done · →242k ←22k ◎7.5M §560k · ⌁50) 6d ──────┤
├→ review-zoom-hic-figure-redesign (done · →374k ←39k ◎6.6M §373k · ⌁50) 6d ────────────┤
├→ review-zoom-hic-methods-glossary (done · →212k ←29k ◎6.2M §591k · ⌁50) 6d ───────────┤
├→ render-bog-annotated-zoom-v2-review-fanin (done · →140k ←48k ◎6.6M §360k · ⌁50) 6d ←─┘ ──────────┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐
│ └→ render-bog-annotated-zoom-v3-correction-fanin (done · →158k ←45k ◎9.9M §396k · ⌁50) 6d ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←
│ └→ review-zoom-v4-slide10a-xaxis-orientation-fix (done · →430k ←51k ◎6.6M §314k · ⌁100) 5d ✉2 │ │ │ │ │ │ │ │ │ │
├→ review-zoom-v3-gene-browser-inventory (done · →236k ←39k ◎8.8M §578k · ⌁50) 6d ←─────────────────┘ ──┤ │ │ │ │ │ │ │ │
├→ review-zoom-v3-gene-browser-render-assets (done · →536k ←42k ◎7.2M §376k · ⌁50) 6d ←─────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
├→ review-zoom-v3-human-3d-dotplot-correlation (done · →366k ←31k ◎4.9M §625k · ⌁50) 6d ←───────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
├→ review-zoom-v3-slide06-violin-censor (done · →359k ←30k ◎4.4M §349k · ⌁50) 6d ←──────────────────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
├→ review-zoom-v3-slide07a-crisp-aligned (done · →287k ←34k ◎3.9M §507k · ⌁50) 6d ←─────────────────────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ─
├→ review-zoom-v3-slide07c-acrocentric-presence (done · →450k ←31k ◎5.2M §732k · ⌁50) 6d ←──────────────────────────────┘ ──┼ ──┼ ──┼ ──┼ ─
├→ review-zoom-v3-slide08b-within-pop-pairwise (done · →316k ←36k ◎3.5M §682k · ⌁50) 6d ←───────────────────────────────────┘ ──┼ ──┼ ──┼ ─
├→ review-zoom-v3-slide09-label-all-communities (done · →323k ←31k ◎4.5M §535k · ⌁50) 6d ←──────────────────────────────────────┘ ──┼ ──┼ ─
├→ review-zoom-v3-slide10a-axis-box-fix (done · →204k ←38k ◎7.5M §322k · ⌁50) 6d ←──────────────────────────────────────────────────┘ ──┼ ─
└→ review-zoom-v3-slide11-wb-labels (done · →266k ←26k ◎3.5M §350k · ⌁50) 6d ←──────────────────────────────────────────────────────────┘ ─
render-bog-annotated (done · →118k ←47k ◎6.3M §9.7k) 6d
└→ render-bog-annotated-zoom (done · →824k ←45k ◎7.8M §361k · ⌁50) 6d ✉6
fix-bog-review (done · →82k ←34k ◎4.7M §10k) 6d
update-abstract-rename (done · →34k ←8.2k ◎469k §4.2k) 7d
├→ lit-review-topic-01 (done · →17k ←1.7k ◎103k §1.9k) 6d ────┐
├→ lit-review-topic-02 (done · →11k ←1.3k ◎75k §2.5k) 6d ─────┤
├→ lit-review-topic-03 (done · →206k ←15k ◎2.2M §8.0k) 6d ────┤
├→ lit-review-topic-04 (abandoned) 7d │
├→ lit-review-topic-04-2 (done · →14k ←1.3k ◎75k §2.2k) 6d ───┤
├→ lit-review-topic-05 (done · →24k ←1.6k ◎88k §2.7k) 6d ─────┤
├→ lit-review-topic-05-2 (done · →230k ←21k ◎4.3M §8.9k) 6d ──┼ ──┐
├→ lit-review-topic-06 (done · →10k ←1.3k ◎76k §2.9k) 6d ─────┤ │
├→ lit-review-topic-07 (done · →11k ←1.3k ◎74k §2.2k) 6d ─────┤ │
├→ lit-review-topic-07-2 (done · →83k ←19k ◎1.7M §8.4k) 6d ───┼ ──┤
├→ lit-review-topic-08 (done · →16k ←2.0k ◎154k §2.3k) 6d ────┤ │
├→ lit-review-topic-09 (done · →9.9k ←1.4k ◎76k §2.2k) 6d ────┤ │
├→ lit-review-topic-10 (done · →18k ←2.2k ◎108k §1.4k) 6d ────┤ │
├→ lit-review-topic-11 (abandoned) 7d │ │
├→ lit-review-topic-11-2 (done · →218k ←22k ◎3.4M §7.2k) 6d ──┤ │
├→ lit-review-topic-12 (done · →21k ←1.3k ◎88k §2.0k) 6d ─────┤ │
├→ lit-review-topic-13 (done · →14k ←1.7k ◎98k §2.3k) 6d ─────┤ │
├→ lit-review-topic-14 (done · →14k ←1.6k ◎103k §2.3k) 6d ────┤ │
├→ lit-review-synthesis (done · →433k ←6.8k ◎13M) 6d ←────────┘ ──┤
└→ lit-review-v2 (done · →147k ←68k ◎3.8M §13k) 6d ←──────────────┘
└→ render-lit-review (done · →51k ←13k ◎2.5M §9.4k) 6d
build-bog-v2-3 (done · →442k ←29k ◎5.7M §11k) 7d
build-bog-v2-2 (done · →186k ←55k ◎15M §9.2k) 7d
.coordinator-2 (abandoned) 1mo [turn 0]
.coordinator-3 (abandoned) 1mo [turn 0]
‖ build-bog-brainstorm (abandoned · §1.8k) 7d
‖ build-bog-v2 (abandoned) 7d
nj-tree-from (done · →110k ←32k ◎4.3M §8.7k) 7d
└→ bog-v2-slide-07 (done · →103k ←15k ◎2.1M §11k) 7d
└→ bog-v2-slides (done · →138k ←34k ◎2.1M §10k) 7d ←─┐
bog-v2-slide-01 (done · →50k ←8.6k ◎1.1M §12k) 7d ─────┤
bog-v2-slide-02 (done · →51k ←8.7k ◎1.9M §11k) 7d ─────┤
bog-v2-slide-03 (done · →55k ←13k ◎1.6M §12k) 7d ──────┤
bog-v2-slide-04 (done · →45k ←9.2k ◎1.1M §10k) 7d ─────┤
bog-v2-slide-05 (done · →48k ←13k ◎1.6M §12k) 7d ──────┤
bog-v2-slide-06 (done · →71k ←17k ◎2.4M §14k) 7d ──────┤
bog-v2-slide-08 (done · →74k ←14k ◎2.9M §10k) 7d ──────┤
bog-v2-slide-09 (done · →82k ←22k ◎2.8M §9.8k) 7d ─────┤
bog-v2-slide-10 (done · →63k ←8.2k ◎1.4M §11k) 7d ─────┤
bog-v2-slide-11 (done · →43k ←8.5k ◎977k §10k) 7d ─────┤
bog-v2-slide-12 (done · →72k ←16k ◎2.6M §6.8k) 7d ─────┤
bog-v2-slide-13 (done · →91k ←12k ◎1.6M §11k) 7d ──────┤
bog-v2-slide-14 (done · →104k ←21k ◎4.4M §12k) 7d ─────┤
bog-v2-slide-15 (done · →60k ←9.9k ◎1.3M §14k) 7d ─────┘
‖ improve-bog-slides (abandoned) 7d
read-end-to (done · →234k ←35k ◎4.0M §15k) 7d
park-off-target (done · →172k ←51k ◎4.8M §8.5k) 7d
└→ audit-canonical-materials (done · →229k ←48k ◎10M §9.5k) 7d
‖ audit-existing-manuscript (abandoned) 7d
render-manuscript-draft-4 (done · →77k ←19k ◎3.8M §7.8k) 7d
‖ render-manuscript-draft-3 (abandoned · §1.4k) 7d
render-manuscript-draft-2 (failed · →192k ←3.4k ◎3.2M §1.8k) 8d
‖ render-manuscript-draft (abandoned) 8d
survey-pipeline-section (done · →12k ←4.4k ◎1.9M §11k) 8d
└→ synthesize-paper-rough (done · →709 ←24 ◎263k §13k) 8d ←─────────────────┐
├→ figure-1-landscape-communities (done · →692 ←45 ◎139k §11k) 8d ────────┼ ──┐
├→ figure-2-heterogeneity-population (done · →104k ←33k ◎5.0M §8.4k) 8d ──┼ ──┤
├→ figure-3-3d-convergence (done · →132k ←52k ◎10M §8.7k) 8d ─────────────┼ ──┤
├→ figure-4-pedigree-mouse (done · →163k ←47k ◎10M §9.3k) 8d ─────────────┼ ──┤
├→ figure-ed1-ed2-pipeline-seqlevel (done · →232 ←23 ◎170k §12k) 8d ──────┼ ──┤
├→ figure-ed3-ed4-annotation-genes (done · →560 ←61 ◎138k §12k) 8d ───────┼ ──┤
├→ figure-ed5-hic-robustness (done · →132k ←37k ◎5.6M §7.3k) 8d ──────────┼ ──┤
├→ figure-ed6-ed7-singlecell-mouse (done · →130k ←31k ◎5.2M §8.3k) 8d ────┼ ──┤
├→ figure-ed8-discussion-models (done · →170k ←56k ◎11M §11k) 8d ─────────┼ ──┤
├→ validate-acceptance-checklist (done · →83k ←21k ◎1.7M §15k) 8d ────────┼ ──┤
├→ validate-captions-references (done · →95k ←22k ◎2.2M §5.1k) 8d ────────┼ ──┤
├→ validate-reproducibility-paths (done · →225k ←44k ◎7.3M §12k) 8d ──────┼ ──┤
├→ validate-statistics-fdr-cis (done · →201k ←38k ◎7.2M §11k) 8d ─────────┼ ──┤
└→ compile-manuscript-draft (done · →885 ←86 ◎134k §11k) 8d ──────────────┼ ←─┘
survey-annotation-section (done · →809 ←56 ◎62k §7.6k) 8d ──────────────────┤
survey-gene-enrichment (done · →334 ←32 ◎171k §11k) 8d ─────────────────────┤
survey-heterogeneity-section (done · →140 ←26 ◎112k §9.5k) 8d ──────────────┤
survey-hi-c (done · →106 ←9 ◎98k §12k) 8d ──────────────────────────────────┤
survey-dip-c (done · →223 ←92 ◎187k §11k) 8d ───────────────────────────────┤
survey-integrated-interpretation (done · →69k ←17k ◎861k §12k) 8d ──────────┤
survey-mouse-cross (done · →70k ←22k ◎1.1M §10k) 8d ────────────────────────┤
survey-rpe-1-self (done · →69k ←18k ◎1.2M §8.0k) 8d ────────────────────────┤
survey-pedigree-recombination (done · →117k ←24k ◎3.2M §12k) 8d ────────────┤
survey-limitations-summary (done · →75k ←24k ◎1.9M §10k) 8d ────────────────┤
survey-figure-inventory (done · →79k ←22k ◎2.6M §9.5k) 8d ──────────────────┤
survey-data-table (done · →73k ←14k ◎1.5M §7.4k) 8d ────────────────────────┤
survey-cytogenetic-fish (done · →114k ←18k ◎1.8M §11k) 8d ──────────────────┘
.coordinator-1 (abandoned) 1mo [turn 54]
.coordinator-0 (abandoned) 1mo [turn 1]
write-feedback-document (done · →17k ←3.6k ◎75k §10k) 11d ✉1
merge-archive-into-graph (done · →145k ←50k ◎9.8M §12k) 11d
.user-erikg-0 (abandoned) 1mo ✉56
.evolve-partition-run-20260402-235845 (done) 1mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-235845 (done · →32k ←5.4k ◎260k) 1mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-235845 (done · →63k ←24k ◎1.4M) 1mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-235845 (done · →52k ←9.3k ◎991k) 1mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-235845 (done · →40k ←8.0k ◎467k) 1mo ──────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-235845 (done · →77k ←10k ◎887k) 1mo ────────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-235845 (done · →55k ←8.7k ◎818k) 1mo ──┤
├→ .evolve-analyze-mutation-run-20260402-235845 (done · →45k ←6.5k ◎784k) 1mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-235845 (done · →43k ←7.7k ◎653k) 1mo ──────┤
└→ .evolve-synthesize-run-20260402-235845 (done · →51k ←27k ◎763k) 1mo ←─────────────────┘
└→ .evolve-apply-run-20260402-235845 (done · →46k ←7.8k ◎1.0M) 1mo
└→ .evolve-evaluate-run-20260402-235845 (done · →50k ←9.8k ◎748k) 1mo
build-community-legend (done · →33k ←3.8k ◎264k §5.7k) 1mo
└→ reformat-gene-family (done · →63k ←12k ◎1.2M §11k) 1mo
fix-executive-summary (done · →37k ←8.5k ◎634k §7.0k) 1mo
executive-summary-combined (done · →67k ←11k ◎1.6M §10k) 1mo
write-bug-report (done · →17k ←3.0k ◎171k §5.2k) 1mo
.evolve-partition-run-20260402-150803 (done) 1mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-150803 (done · →38k ←7.7k ◎531k) 1mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-150803 (done · →61k ←17k ◎1.5M) 1mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-150803 (done · →37k ←7.4k ◎848k) 1mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-150803 (done · →31k ←11k ◎594k) 1mo ───────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-150803 (done · →29k ←10.0k ◎459k) 1mo ──────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-150803 (done · →42k ←10k ◎725k) 1mo ───┤
├→ .evolve-analyze-mutation-run-20260402-150803 (done · →27k ←6.5k ◎487k) 1mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-150803 (done · →16k ←5.6k ◎395k) 1mo ──────┤
└→ .evolve-synthesize-run-20260402-150803 (done · →46k ←24k ◎623k) 1mo ←─────────────────┘
└→ .evolve-apply-run-20260402-150803 (done · →37k ←6.2k ◎1.0M) 1mo
└→ .evolve-evaluate-run-20260402-150803 (done · →33k ←11k ◎447k) 1mo
.evolve-partition-run-20260402-150503 (done) 1mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-150503 (done · →30k ←6.6k ◎370k) 1mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-150503 (done · →48k ←17k ◎1.3M) 1mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-150503 (done · →49k ←9.7k ◎978k) 1mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-150503 (done · →36k ←12k ◎685k) 1mo ───────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-150503 (done · →34k ←12k ◎395k) 1mo ────────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-150503 (done · →40k ←9.6k ◎871k) 1mo ──┤
├→ .evolve-analyze-mutation-run-20260402-150503 (done · →27k ←5.6k ◎522k) 1mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-150503 (done · →38k ←6.4k ◎378k) 1mo ──────┤
└→ .evolve-synthesize-run-20260402-150503 (done · →47k ←25k ◎472k) 1mo ←─────────────────┘
└→ .evolve-apply-run-20260402-150503 (done · →38k ←8.7k ◎1.2M) 1mo
└→ .evolve-evaluate-run-20260402-150503 (done · →37k ←12k ◎742k) 1mo
bug-report-wg (done · →21k ←4.4k ◎565k §8.9k) 1mo
fix-ensure-all (done · →42k ←17k ◎3.5M §5.3k) 1mo
└→ fact-check-validate (done · →58k ←16k ◎1.9M §6.8k) 1mo
urgent-validate-and (done · →67k ←25k ◎3.7M §6.2k) 1mo ↩3
deep-research-or4f (done · →33k ←4.8k ◎488k §5.2k) 1mo
├→ multi-copy-or (done · →29k ←6.0k ◎490k §5.0k) 1mo ─────────────────────┐
├→ or4f-copy-number (done · →24k ←6.7k ◎574k §5.1k) 1mo ──────────────────┤
├→ or4f-disease-associations (done · →19k ←4.8k ◎306k §5.3k) 1mo ─────────┤
├→ or4f-functional-characterization (done · →33k ←7.3k ◎854k §5.9k) 1mo ──┤
├→ phr-or-biology (done · →42k ←9.2k ◎1.1M §5.6k) 1mo ────────────────────┤
├→ subtelomeric-or-gene (done · →22k ←5.4k ◎385k §5.1k) 1mo ──────────────┤
├→ synthesis-integrate-deep (done · →48k ←7.4k ◎690k §5.0k) 1mo ──────────┼ ←─┐
└→ integrate-or4f-deep (done · →38k ←9.5k ◎675k §5.7k) 1mo ←──────────────┘ │
deep-research-dux4 (done · →39k ←12k ◎696k §5.3k) 1mo ────────────────────────┤
deep-research-tubb8 (done · →47k ←9.1k ◎938k §6.1k) 1mo ──────────────────────┤
├→ tubb8-basic-biology (done · →17k ←4.3k ◎252k §5.9k) 1mo ───────────────────┼ ──┐
├→ tubb8-copy-number (done · →57k ←17k ◎1.9M §7.0k) 1mo ──────────────────────┼ ──┤
│ ├→ tubb8-assembly-comparison (done · →36k ←7.7k ◎959k §7.8k) 1mo ───────────┼ ──┼ ──┐
│ ├→ tubb8-copy-number-2 (done · →40k ←14k ◎1.4M §7.2k) 1mo ──────────────────┼ ──┼ ──┤
│ ├→ tubb8-copy-number-3 (done · →40k ←14k ◎1.3M §5.7k) 1mo ──────────────────┼ ──┼ ──┤
│ ├→ tubb8-functional-vs (done · →39k ←6.1k ◎666k §4.8k) 1mo ─────────────────┼ ──┼ ──┤
│ ├→ tubb8b-copy-number (done · →38k ←15k ◎772k §5.7k) 1mo ───────────────────┼ ──┼ ──┤
│ └→ integrate-tubb8-literature (done · →32k ←11k ◎951k §8.8k) 1mo ───────────┼ ──┼ ←─┘
├→ tubb8-mutations-and (done · →26k ←7.0k ◎328k §4.8k) 1mo ───────────────────┼ ──┤
├→ tubb8-t2t-assembly (done · →20k ←6.3k ◎293k §5.5k) 1mo ────────────────────┼ ──┤
├→ tubb8b-paralog-characterization (done · →30k ←9.2k ◎507k §7.6k) 1mo ───────┼ ──┤
├→ tubulin-subtelomeric-positioning (done · →29k ←9.3k ◎460k §5.4k) 1mo ──────┼ ──┤
└→ tubb8-research-synthesis (done · →64k ←18k ◎1.3M §5.9k) 1mo ───────────────┼ ←─┘
deep-research-gtp (done · →44k ←11k ◎867k §5.8k) 1mo ─────────────────────────┘
review-extract-and (done · →31k ←8.8k ◎792k §14k) 1mo
├→ update-revise-phr (done · →30k ←9.6k ◎276k §2.5k) 1mo ────┐
├→ update-revise-phr-2 (done · →30k ←7.6k ◎426k §4.1k) 1mo ──┤
└→ validate-cross-check (done · →0 ←0 §3.6k) 1mo ←───────────┘
└→ clean-commit-stage (done · →0 ←0 §5.7k) 1mo
integration-testing-copy (done · →46k ←22k ◎1.9M §7.2k) 1mo
research-copy-number (done · →25k ←4.7k ◎347k §7.7k) 1mo
├→ check-tool-availability (done · →17k ←5.8k ◎411k §7.0k) 1mo ──────────────────┐
├→ implement-copy-number (done · →50k ←19k ◎1.6M §6.6k) 1mo │
├→ investigate-copy-number (done · →67k ←22k ◎2.3M §8.7k) 1mo ───────────────────┤
│ ├→ analyze-statistical-framework (done · →34k ←18k ◎568k §5.2k) 1mo ───────────┼ ──┐
│ ├→ investigate-weighted-hypergeometric (done · →26k ←7.7k ◎394k §9.2k) 1mo ────┼ ──┤
│ ├→ research-r-phyper (done · →48k ←19k ◎1.2M §11k) 1mo ────────────────────────┼ ──┤
│ │ ├→ benchmark-phyper-computational (done · →42k ←21k ◎1.4M §6.5k) 1mo ────────┼ ──┼ ──┐
│ │ ├→ map-copy-number (done · →28k ←2.4k ◎315k §5.8k) 1mo ──────────────────────┼ ──┼ ──┤ ←─┐
│ │ │ ├→ edge-case-analysis (done · →0 ←0 §20k) 1mo │ │ │ │
│ │ │ ├→ integration-testing-with (abandoned · →46k ←19k ◎1.6M §1.6k) 1mo ───────┼ ──┼ ──┼ ──┼ ──┐
│ │ │ ├→ mathematical-formulation-of (done · →17k ←3.4k ◎294k §2.7k) 1mo │ │ │ │ │
│ │ │ ├→ mathematical-verification-of (done · →59k ←18k ◎2.4M §8.4k) 1mo ────────┼ ──┼ ──┼ ──┼ ──┤
│ │ │ ├→ performance-benchmarking-parameter (done · →43k ←21k ◎1.5M §8.4k) 1mo ──┼ ──┼ ──┼ ──┼ ──┤
│ │ │ ├→ robust-r-code (done · →23k ←3.3k ◎374k §4.6k) 1mo │ │ │ │ │
│ │ │ ├→ statistical-validation-framework (done · →23k ←3.0k ◎312k §4.7k) 1mo │ │ │ │ │
│ │ │ └→ synthesize-parameter-mapping (done · →41k ←17k ◎1.6M §8.5k) 1mo ────────┼ ──┼ ──┼ ──┼ ←─┘
│ │ ├→ research-r-alternatives (done · →36k ←17k ◎613k §6.5k) 1mo ───────────────┼ ──┼ ──┤ │
│ │ ├→ validate-weighted-phyper (done · →71k ←41k ◎2.0M §37k) 1mo ───────────────┼ ──┼ ──┤ │
│ │ ├→ verify-weighted-phyper (done · →46k ←19k ◎1.1M §8.2k) 1mo ────────────────┼ ──┼ ──┤ │
│ │ └→ synthesize-r-phyper (done · →0 ←0 §2.7k) 1mo ─────────────────────────────┼ ──┼ ←─┘ │
│ ├→ survey-existing-copy (done · →28k ←6.3k ◎392k §6.7k) 1mo ───────────────────┼ ──┤ │
│ └→ synthesize-copy-number (done · →44k ←7.5k ◎600k §5.0k) 1mo ─────────────────┼ ←─┘ │
├→ investigate-gat-genomic (done · →30k ←7.9k ◎1.2M §6.5k) 1mo ──────────────────┤ │
├→ investigate-great-rgreat (done · →22k ←5.1k ◎382k §5.7k) 1mo ─────────────────┤ │
├→ investigate-permutation-based (done · →37k ←10.0k ◎722k §7.2k) 1mo ───────────┤ │
├→ investigate-weighted-gene (done · →30k ←6.6k ◎425k §5.2k) 1mo ────────────────┤ │
├→ literature-search-copy (done · →22k ←6.0k ◎424k §6.9k) 1mo ───────────────────┤ │
└→ synthesize-findings-and (done · →47k ←8.9k ◎639k §7.4k) 1mo ←─────────────────┘ │
fix-implement-copy (done · →62k ←24k ◎2.1M §1.5k) 1mo ───────────────────────────────────────┘
fix-map-copy-2 (done · →56k ←17k ◎2.2M §13k) 1mo
├→ edge-case-analysis-2 (done · →17k ←1.5k ◎105k §11k) 1mo ──────────────────┐
├→ robust-r-code-2 (done · →56k ←31k ◎2.1M §10k) 1mo ────────────────────────┤
├→ statistical-validation-framework-2 (done · →17k ←3.1k ◎252k §15k) 1mo ────┤
│ ├→ null-distribution-validation (done · →48k ←16k ◎2.1M §9.9k) 1mo ────────┼ ──┐
│ ├→ parameter-constraint-validation (done · →74k ←34k ◎4.0M §8.1k) 1mo ─────┼ ──┤
│ ├→ type-i-error (done · →44k ←16k ◎1.5M §9.1k) 1mo ────────────────────────┼ ──┤
│ └→ statistical-validation-framework-3 (done · →66k ←25k ◎2.6M §3.3k) 1mo ──┼ ←─┘
└→ synthesize-r-phyper-2 (done · →18k ←4.1k ◎392k §8.2k) 1mo ←───────────────┘
├→ final-recommendations-synthesis (done · →41k ←5.6k ◎861k §8.1k) 1mo ───────────┐
│ ├→ decision-framework-recommendations (done · →28k ←7.1k ◎460k §10k) 1mo ───────┼ ──┐
│ ├→ implementation-roadmap-recommendations (done · →28k ←9.0k ◎473k §5.9k) 1mo ──┼ ──┤
│ ├→ methodology-synthesis-recommendations (done · →37k ←6.8k ◎462k §7.7k) 1mo ───┼ ──┤
│ ├→ use-case-scenarios (done · →34k ←7.4k ◎478k §8.8k) 1mo ──────────────────────┼ ──┤
│ └→ integrate-final-recommendations (done · →44k ←12k ◎513k §7.9k) 1mo ──────────┼ ←─┘
├→ implementation-best-practices (done · →41k ←9.7k ◎452k §7.3k) 1mo ─────────────┤
├→ methodology-synthesis-documentation (done · →37k ←7.9k ◎583k §6.4k) 1mo ───────┤
├→ performance-and-accuracy (done · →41k ←7.1k ◎799k §6.5k) 1mo ──────────────────┤
└→ integration-and-final (done · →35k ←9.4k ◎765k §7.8k) 1mo ←────────────────────┘
fix-mark-fix (done · →27k ←4.9k ◎619k §8.3k) 1mo
fix-verify-fix (abandoned · §5.1k) 1mo
fix-map-copy (done · →36k ←8.0k ◎1.1M §9.7k) 1mo ✉1
└→ map-copy-number-2 (done · →16k ←3.5k ◎288k §7.8k) 1mo
fix-resolve-fix (done · →28k ←5.7k ◎885k §6.9k) 1mo
map-every-protein (done · →51k ←12k ◎1.1M §9.5k) 1mo
write-paper-ready (done · →39k ←8.1k ◎477k §12k) 1mo
go-enrichment-on (done · →58k ←13k ◎1.6M §7.9k) 1mo
detailed-mapping-enriched (done · →82k ←20k ◎2.7M §12k) 1mo
research-snrnp-assembly (done · →39k ←11k ◎1.0M §7.6k) 1mo
└→ synthesis-phr-gene (done · →22k ←5.8k ◎358k §7.3k) 1mo ←────────┐
research-olfactory-receptor (done · →32k ←9.3k ◎910k §8.8k) 1mo ───┤
research-post-transcriptional (done · →51k ←13k ◎1.7M §7.3k) 1mo ──┤
research-neuron-projection (done · →23k ←4.9k ◎566k §5.8k) 1mo ────┘
rerun-enrichment-excluding (done · →42k ←15k ◎1.5M §7.0k) 1mo
report-show-enrichment (done · →19k ←4.5k ◎337k §6.9k) 1mo
research-inventory-files (done · →28k ←6.6k ◎729k §7.3k) 1mo
└→ step-1-extract-chm13 (done · →17k ←3.6k ◎439k §7.1k) 1mo
└→ step-2-intersect-genes (done · →25k ←6.5k ◎1.0M §5.6k) 1mo
└→ step-3-run-go (done · →34k ←14k ◎1.8M §5.7k) 1mo
└→ step-4-compare-phr (done · →33k ←12k ◎1.2M §5.6k) 1mo
└→ step-5-reconcile-with (done · →27k ←5.6k ◎463k §6.8k) 1mo
find-the-last (done · →24k ←4.1k ◎178k §4.9k) 1mo
.html-publish-public-mirror (in-progress) 53s
.chat-5 (in-progress · ⌁50) 6d [turn 0]
.chat-4 (in-progress · ⌁50) 7d [turn 0]
.assign-review-zoom-v9-labels-superpop-stats-polish (done) 4d
└→ review-zoom-v9-labels-superpop-stats-polish (done · →156k ←59k ◎11M §506k · ⌁100) 4d
├→ .flip-review-zoom-v9-labels-superpop-stats-polish (done · →348k ←24k ◎302k) 4d
│ └→ .evaluate-review-zoom-v9-labels-superpop-stats-polish (done · →127k ←7.3k ◎111k) 4d
└→ review-zoom-v9-fanin-render (done · →520k ←33k ◎6.1M §156k · ⌁100) 4d ✉4 ←───────────┐
└→ .flip-review-zoom-v9-fanin-render (done · →35k ←14k ◎22k) 4d │
└→ .evaluate-review-zoom-v9-fanin-render (done · →86k ←5.7k ◎70k) 4d │
.assign-review-zoom-v9-leiden-figure-slide (done) 4d │
└→ review-zoom-v9-leiden-figure-slide (done · →215k ←18k ◎2.2M §261k · ⌁100) 4d ──────────┤
└→ .flip-review-zoom-v9-leiden-figure-slide (done · →175k ←12k ◎144k) 4d │
└→ .evaluate-review-zoom-v9-leiden-figure-slide (done · →70k ←4.4k ◎61k) 4d │
.assign-review-zoom-v9-slide06a-q-axis-kbp (done) 4d │
└→ review-zoom-v9-slide06a-q-axis-kbp (done · →256k ←36k ◎4.9M §752k · ⌁100) 4d ──────────┤
└→ .flip-review-zoom-v9-slide06a-q-axis-kbp (done · →474k ←17k ◎401k) 4d │
└→ .evaluate-review-zoom-v9-slide06a-q-axis-kbp (done · →248k ←12k ◎189k) 4d │
.assign-review-zoom-v9-slide10m2-better-3d-viz (done) 4d │
└→ review-zoom-v9-slide10m2-better-3d-viz (done · →771k ←42k ◎12M §510k · ⌁50) 4d ────────┤
└→ .flip-review-zoom-v9-slide10m2-better-3d-viz (done · →114k ←21k ◎82k) 4d │
└→ .evaluate-review-zoom-v9-slide10m2-better-3d-viz (done · →365k ←10k ◎301k) 4d │
.assign-review-zoom-v9-fanin-render (done · →15k ←498 ◎11k) 4d ───────────────────────────┤
.assign-review-zoom-v9-broom-jaccard-method-slides (done · →16k ←594 ◎10k) 4d │
└→ review-zoom-v9-broom-jaccard-method-slides (done · →224k ←24k ◎5.2M §241k · ⌁100) 4d ──┘
└→ .flip-review-zoom-v9-broom-jaccard-method-slides (done · →66k ←13k ◎55k) 4d
└→ .evaluate-review-zoom-v9-broom-jaccard-method-slides (done · →135k ←11k ◎99k) 4d
.assign-review-zoom-v5-copy-number-enrichment-figures (done) 5d
└→ review-zoom-v5-copy-number-enrichment-figures (done · →367k ←50k ◎7.5M §464k · ⌁100) 5d ←────────────────────┐
├→ .flip-review-zoom-v5-copy-number-enrichment-figures (done · →278k ←20k ◎242k) 5d │
│ └→ .evaluate-review-zoom-v5-copy-number-enrichment-figures (done · →156k ←9.7k ◎88k) 5d │
└→ review-zoom-v5-enrichment-fanin-render (done · →1.0M ←40k ◎11M §228k · ⌁100) 5d ✉2 ────────────────────────┼ ←─┐
├→ .flip-review-zoom-v5-enrichment-fanin-render (done · →36k ←14k ◎21k) 5d │ │
│ └→ .evaluate-review-zoom-v5-enrichment-fanin-render (done · →153k ←8.4k ◎90k) 5d │ │
└→ review-zoom-v5-phr-jaccard-method-slide (done · →306k ←35k ◎8.0M §314k · ⌁50) 5d ────────────────────────┼ ──┼ ←─┐
├→ .flip-review-zoom-v5-phr-jaccard-method-slide (done · →136k ←16k ◎106k) 5d │ │ │
│ └→ .evaluate-review-zoom-v5-phr-jaccard-method-slide (done · →153k ←9.2k ◎72k) 5d │ │ │
└→ review-zoom-v5-pggb-gfalook-2d-render (done · →220k ←46k ◎6.7M §229k) 5d ──────────────────────────────┼ ──┼ ──┼ ←─┐
├→ .flip-review-zoom-v5-pggb-gfalook-2d-render (done · →98k ←16k ◎74k) 5d │ │ │ │
│ └→ .evaluate-review-zoom-v5-pggb-gfalook-2d-render (done · →89k ←8.9k ◎70k) 5d │ │ │ │
└→ review-zoom-v6-dipc-validation-slides (done · →470k ←55k ◎9.7M §386k · ⌁50) 5d ──────────────────────┼ ──┼ ──┼ ──┼ ←─┐
├→ .flip-review-zoom-v6-dipc-validation-slides (done · →124k ←16k ◎88k) 5d │ │ │ │ │
│ └→ .evaluate-review-zoom-v6-dipc-validation-slides (done · →217k ←11k ◎152k) 5d │ │ │ │ │
└→ review-zoom-v6-pggb-graph-black (done · →312k ←35k ◎4.2M §215k) 5d ────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ←─┐
├→ .flip-review-zoom-v6-pggb-graph-black (done · →58k ←12k ◎41k) 5d │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v6-pggb-graph-black (done · →120k ←6.5k ◎101k) 5d │ │ │ │ │ │
└→ review-zoom-v6-community-assignment-method-slide (done · →306k ←42k ◎7.5M §258k · ⌁50) 5d ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
├→ .flip-review-zoom-v6-community-assignment-method-slide (done · →36k ←19k ◎21k) 5d │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v6-community-assignment-method-slide (done · →194k ←8.6k ◎127k) 5d │ │ │ │ │ │ │
├→ review-zoom-v7-gene-enrichment-report-backed (done · →166k ←35k ◎6.5M §296k · ⌁50) 5d ─────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←
│ ├→ .flip-review-zoom-v7-gene-enrichment-report-backed (done · →34k ←12k ◎21k) 5d │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v7-gene-enrichment-report-backed (done · →239k ←11k ◎209k) 5d │ │ │ │ │ │ │
│ └→ review-zoom-v7-fanin-render (done · →451k ←38k ◎6.5M §267k · ⌁50) 5d ────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ ├→ .flip-review-zoom-v7-fanin-render (done · →239k ←13k ◎196k) 5d │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v7-fanin-render (done · →15k ←711 ◎10k) 5d │ │ │ │ │ │ │
│ ├→ review-zoom-v8-chm13-ucsc-example-selection (done · →570k ←40k ◎13M §389k · ⌁50) 5d ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ ├→ .flip-review-zoom-v8-chm13-ucsc-example-selection (done · →200k ←20k ◎152k) 5d │ │ │ │ │ │ │
│ │ │ └→ .evaluate-review-zoom-v8-chm13-ucsc-example-selection (done · →160k ←7.6k ◎124k) 5d │ │ │ │ │ │ │
│ │ └→ review-zoom-v8-fanin-render (done · →767k ←43k ◎6.8M §330k · ⌁100) 5d ───────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-review-zoom-v8-fanin-render (done · →107k ←16k ◎73k) 5d │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v8-fanin-render (done · →199k ←8.1k ◎117k) 5d │ │ │ │ │ │ │
│ ├→ review-zoom-v8-hic-dipc-clarity-split (done · →785k ←66k ◎16M §595k · ⌁100) 5d ────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-review-zoom-v8-hic-dipc-clarity-split (done · →99k ←20k ◎74k) 5d │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v8-hic-dipc-clarity-split (done · →462k ←14k ◎363k) 5d │ │ │ │ │ │ │
│ ├→ review-zoom-v8-mds-superpop-community-polish (done · →1.0M ←44k ◎15M §560k · ⌁100) 5d ─────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-review-zoom-v8-mds-superpop-community-polish (done · →244k ←20k ◎182k) 5d │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v8-mds-superpop-community-polish (done · →269k ←8.9k ◎183k) 5d │ │ │ │ │ │ │
│ ├→ review-zoom-v8-slide06a-length-alternatives (done · →378k ←43k ◎5.5M §599k · ⌁100) 5d ─────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-review-zoom-v8-slide06a-length-alternatives (done · →418k ←23k ◎362k) 5d │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v8-slide06a-length-alternatives (done · →150k ←8.4k ◎88k) 5d │ │ │ │ │ │ │
│ └→ review-zoom-v8-typography-legend-cleanup (done · →1.1M ←63k ◎15M §349k · ⌁50) 5d ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-v8-typography-legend-cleanup (done · →35k ←9.5k ◎20k) 5d │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v8-typography-legend-cleanup (done · →296k ←9.2k ◎194k) 5d │ │ │ │ │ │ │
├→ review-zoom-v7-hic-3d-plots (done · →359k ←32k ◎6.8M §359k · ⌁50) 5d ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-v7-hic-3d-plots (done · →228k ←14k ◎200k) 5d │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v7-hic-3d-plots (done · →108k ←8.8k ◎88k) 5d │ │ │ │ │ │ │
├→ review-zoom-v7-hic-mapq0-method-slide (done · →287k ←35k ◎5.7M §645k · ⌁50) 5d ────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-v7-hic-mapq0-method-slide (done · →181k ←11k ◎156k) 5d │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v7-hic-mapq0-method-slide (done · →442k ←11k ◎398k) 5d │ │ │ │ │ │ │
├→ review-zoom-v7-slide06a-length-histogram-restore (done · →228k ←26k ◎3.3M §446k · ⌁50) 5d ─────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-v7-slide06a-length-histogram-restore (done · →281k ←19k ◎240k) 5d │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v7-slide06a-length-histogram-restore (done · →135k ←11k ◎97k) 5d │ │ │ │ │ │ │
├→ review-zoom-v7-slide08b-nearest-superpop-mds (done · →782k ←38k ◎7.9M §441k · ⌁50) 5d ─────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-v7-slide08b-nearest-superpop-mds (done · →174k ←21k ◎141k) 5d │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v7-slide08b-nearest-superpop-mds (done · →239k ←8.1k ◎129k) 5d │ │ │ │ │ │ │
└→ review-zoom-v7-slide09-community-mds-layout (done · →379k ←33k ◎4.7M §568k · ⌁50) 5d ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
└→ .flip-review-zoom-v7-slide09-community-mds-layout (done · →361k ←18k ◎322k) 5d │ │ │ │ │ │ │
└→ .evaluate-review-zoom-v7-slide09-community-mds-layout (done · →180k ←9.4k ◎118k) 5d │ │ │ │ │ │ │
.assign-review-zoom-v5-copy-number-enrichment-inventory (done) 5d │ │ │ │ │ │ │
└→ review-zoom-v5-copy-number-enrichment-inventory (done · →248k ←35k ◎8.0M §703k · ⌁100) 5d ───────────────────┘ │ │ │ │ │ │
├→ .flip-review-zoom-v5-copy-number-enrichment-inventory (done · →174k ←15k ◎131k) 5d │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v5-copy-number-enrichment-inventory (done · →498k ←15k ◎429k) 5d │ │ │ │ │ │
└→ review-zoom-v5-copy-number-enrichment-narrative (done · →156k ←24k ◎2.9M §267k · ⌁50) 5d ──────────────────────┤ ──┼ ──┼ ──┼ ──┼ ──┼ ─
└→ .flip-review-zoom-v5-copy-number-enrichment-narrative (done · →106k ←14k ◎80k) 5d │ │ │ │ │ │
└→ .evaluate-review-zoom-v5-copy-number-enrichment-narrative (done · →121k ←10k ◎89k) 5d │ │ │ │ │ │
.assign-review-zoom-v5-copy-number-enrichment-narrative (done · →16k ←410 ◎10k) 5d ─────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-v5-enrichment-fanin-render (done · →16k ←343 ◎11k) 5d ──────────────────────────────────────────┤ │ │ │ │ │
.assign-review-zoom-v5-07a-tree-community-heatmaps (done · →16k ←502 ◎11k) 5d │ │ │ │ │ │
└→ review-zoom-v5-07a-tree-community-heatmaps (done · →321k ←56k ◎7.6M §739k · ⌁50) 5d ✉2 ──────────────────────────┘ │ │ │ │ │
└→ .flip-review-zoom-v5-07a-tree-community-heatmaps (done · →473k ←23k ◎407k) 5d │ │ │ │ │
└→ .evaluate-review-zoom-v5-07a-tree-community-heatmaps (done · →217k ←9.9k ◎144k) 5d │ │ │ │ │
.assign-review-zoom-v5-phr-jaccard-method-slide (done) 5d ──────────────────────────────────────────────────────────────┘ │ │ │ │
.assign-review-zoom-v5-pggb-gfalook-2d-render (done · →16k ←491 ◎11k) 5d ───────────────────────────────────────────────────┘ │ │ │
.assign-review-zoom-v6-dipc-validation-slides (done · →17k ←579 ◎10k) 5d ───────────────────────────────────────────────────────┘ │ │
.assign-review-zoom-v6-pggb-graph-black (done · →16k ←2.5k ◎10k) 5d ────────────────────────────────────────────────────────────────┘ │
.assign-review-zoom-v6-community-assignment-method-slide (done) 5d ─────────────────────────────────────────────────────────────────────┘
.assign-review-zoom-v7-gene-enrichment-report-backed (done) 5d ────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-hic-3d-plots (done) 5d ─────────────────────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-slide06a-length-histogram-restore (done) 5d ────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-slide08b-nearest-superpop-mds (done) 5d ────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-slide09-community-mds-layout (done) 5d ─────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-fanin-render (done) 5d ─────────────────────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-hic-mapq0-method-slide (done) 5d ───────────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v8-chm13-ucsc-example-selection (done) 5d ─────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v8-hic-dipc-clarity-split (done) 5d ───────────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v8-mds-superpop-community-polish (done · →16k ←2.1k ◎10k) 5d ──────────────────────────────────────────────────────────
.assign-review-zoom-v8-slide06a-length-alternatives (done) 5d ─────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v8-typography-legend-cleanup (done) 5d ────────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v8-fanin-render (done) 5d ─────────────────────────────────────────────────────────────────────────────────────────────
.assign-meiosis-prophase-fish-background-review-deck (done) 5d
└→ meiosis-prophase-fish-background-review-deck (done · →577k ←57k ◎14M §382k · ⌁50) 5d ↩5
└→ .flip-meiosis-prophase-fish-background-review-deck (done · →175k ←19k ◎144k) 5d
└→ .evaluate-meiosis-prophase-fish-background-review-deck (done · →178k ←9.8k ◎152k) 5d
.assign-chm13-phr-ucsc-browser-suite (done · →17k ←583 ◎10k) 5d
└→ chm13-phr-ucsc-browser-suite (done · →316k ←47k ◎7.6M §718k · ⌁100) 5d
└→ .flip-chm13-phr-ucsc-browser-suite (done · →340k ←21k ◎282k) 5d
└→ .evaluate-chm13-phr-ucsc-browser-suite (done · →330k ←11k ◎288k) 5d
.assign-review-zoom-git-provenance-audit (done) 6d
└→ review-zoom-git-provenance-audit (done · →202k ←32k ◎7.3M §92k · ⌁50) 6d ────────────────────────────────┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ─
├→ .flip-review-zoom-git-provenance-audit (done · →34k ←12k ◎21k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-git-provenance-audit (done · →41k ←5.5k ◎25k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-03b-erdos-renyi (done · →225k ←20k ◎2.4M §464k · ⌁50) 6d ──────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ ├→ .flip-review-zoom-03b-erdos-renyi (done · →358k ←14k ◎312k) 6d │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-03b-erdos-renyi (done · →84k ←8.7k ◎62k) 6d │ │ │ │ │ │ │ │
│ └→ render-bog-annotated-zoom-v2-review-fanin (done · →140k ←48k ◎6.6M §360k · ⌁50) 6d ──────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ ├→ .flip-render-bog-annotated-zoom-v2-review-fanin (done · →198k ←17k ◎154k) 6d │ │ │ │ │ │ │ │
│ │ └→ .evaluate-render-bog-annotated-zoom-v2-review-fanin (done · →137k ←7.6k ◎72k) 6d │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-gene-browser-inventory (done · →236k ←39k ◎8.8M §578k · ⌁50) 6d ←───────────────────┤ │ │ │ │ │ │ │
│ │ ├→ .flip-review-zoom-v3-gene-browser-inventory (done · →401k ←21k ◎337k) 6d │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-review-zoom-v3-gene-browser-inventory (done · →144k ←11k ◎120k) 6d │ │ │ │ │ │ │ │
│ │ └→ review-zoom-v3-gene-browser-render-assets (done · →536k ←42k ◎7.2M §376k · ⌁50) 6d ──────────────┼ ←─┤ │ │ │ │ │ │
│ │ ├→ .flip-review-zoom-v3-gene-browser-render-assets (done · →151k ←17k ◎117k) 6d │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-review-zoom-v3-gene-browser-render-assets (done · →198k ←10k ◎138k) 6d │ │ │ │ │ │ │ │
│ │ └→ render-bog-annotated-zoom-v3-correction-fanin (done · →158k ←45k ◎9.9M §396k · ⌁50) 6d ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ ├→ .flip-render-bog-annotated-zoom-v3-correction-fanin (done · →255k ←16k ◎197k) 6d │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-render-bog-annotated-zoom-v3-correction-fanin (done · →98k ←7.2k ◎61k) 6d │ │ │ │ │ │ │ │
│ │ └→ review-zoom-v4-slide10a-xaxis-orientation-fix (done · →430k ←51k ◎6.6M §314k · ⌁100) 5d ✉2 ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-review-zoom-v4-slide10a-xaxis-orientation-fix (done · →142k ←18k ◎107k) 5d │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v4-slide10a-xaxis-orientation-fix (done · →125k ←11k ◎63k) 5d │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-human-3d-dotplot-correlation (done · →366k ←31k ◎4.9M §625k · ⌁50) 6d ──────────────┼ ──┼ ←─┤ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-review-zoom-v3-human-3d-dotplot-correlation (done · →481k ←21k ◎393k) 6d │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-human-3d-dotplot-correlation (done · →112k ←10k ◎83k) 6d │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide06-violin-censor (done · →359k ←30k ◎4.4M §349k · ⌁50) 6d ─────────────────────┼ ──┼ ──┼ ←─┤ ──┼ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-review-zoom-v3-slide06-violin-censor (done · →221k ←13k ◎167k) 6d │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide06-violin-censor (done · →107k ←8.4k ◎81k) 6d │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide07a-crisp-aligned (done · →287k ←34k ◎3.9M §507k · ⌁50) 6d ────────────────────┼ ──┼ ──┼ ──┼ ←─┤ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-review-zoom-v3-slide07a-crisp-aligned (done · →362k ←17k ◎307k) 6d │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide07a-crisp-aligned (done · →120k ←8.7k ◎78k) 6d │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide07c-acrocentric-presence (done · →450k ←31k ◎5.2M §732k · ⌁50) 6d ─────────────┼ ──┼ ──┼ ──┼ ──┼ ←─┤ ──┼ ──┼ ─
│ │ └→ .flip-review-zoom-v3-slide07c-acrocentric-presence (done · →557k ←23k ◎495k) 6d │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide07c-acrocentric-presence (done · →144k ←7.3k ◎76k) 6d │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide08b-within-pop-pairwise (done · →316k ←36k ◎3.5M §682k · ⌁50) 6d ──────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┤ ──┼ ─
│ │ └→ .flip-review-zoom-v3-slide08b-within-pop-pairwise (done · →501k ←21k ◎438k) 6d │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide08b-within-pop-pairwise (done · →134k ←8.8k ◎90k) 6d │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide09-label-all-communities (done · →323k ←31k ◎4.5M §535k · ⌁50) 6d ─────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┤ ─
│ │ └→ .flip-review-zoom-v3-slide09-label-all-communities (done · →371k ←20k ◎328k) 6d │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide09-label-all-communities (done · →135k ←9.1k ◎99k) 6d │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide10a-axis-box-fix (done · →204k ←38k ◎7.5M §322k · ⌁50) 6d ─────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←
│ │ └→ .flip-review-zoom-v3-slide10a-axis-box-fix (done · →124k ←17k ◎100k) 6d │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide10a-axis-box-fix (done · →155k ←9.1k ◎117k) 6d │ │ │ │ │ │ │ │
│ └→ review-zoom-v3-slide11-wb-labels (done · →266k ←26k ◎3.5M §350k · ⌁50) 6d ─────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-v3-slide11-wb-labels (done · →201k ←12k ◎174k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v3-slide11-wb-labels (done · →128k ←8.0k ◎86k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-04-hprcv2-karyogram (done · →133k ←22k ◎2.2M §175k · ⌁50) 6d ──────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-04-hprcv2-karyogram (done · →107k ←11k ◎65k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-04-hprcv2-karyogram (done · →51k ←6.7k ◎43k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-06-length-redesign (done · →386k ←40k ◎5.4M §421k · ⌁50) 6d ───────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-06-length-redesign (done · →153k ←23k ◎119k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-06-length-redesign (done · →217k ←12k ◎153k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-07a-heatmap-tree-pq (done · →376k ←42k ◎5.4M §398k · ⌁50) 6d ──────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-07a-heatmap-tree-pq (done · →189k ←15k ◎146k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-07a-heatmap-tree-pq (done · →184k ←9.7k ◎135k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-07b-tree-complete-unrooted (done · →458k ←38k ◎6.5M §392k · ⌁50) 6d ───────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-07b-tree-complete-unrooted (done · →240k ←14k ◎194k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-07b-tree-complete-unrooted (done · →129k ←7.8k ◎80k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-08b-superpop-dispersion (done · →372k ←41k ◎9.9M §710k · ⌁50) 6d ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-08b-superpop-dispersion (done · →496k ←19k ◎433k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-08b-superpop-dispersion (done · →183k ←11k ◎136k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-09-mds-community-leading (done · →444k ←30k ◎6.1M §549k · ⌁50) 6d ─────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-09-mds-community-leading (done · →319k ←17k ◎259k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-09-mds-community-leading (done · →204k ←9.5k ◎150k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-14-gene-background (done · →190k ←24k ◎3.7M §329k · ⌁50) 6d ───────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-14-gene-background (done · →227k ←15k ◎188k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-14-gene-background (done · →79k ←7.9k ◎50k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-14-gene-enrichment-or4f (done · →683k ←39k ◎11M §524k · ⌁50) 6d ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-14-gene-enrichment-or4f (done · →251k ←16k ◎197k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-14-gene-enrichment-or4f (done · →246k ←11k ◎182k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-density-methods-narrative (done · →242k ←22k ◎7.5M §560k · ⌁50) 6d ────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-density-methods-narrative (done · →301k ←5.8k ◎236k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-density-methods-narrative (done · →244k ←8.6k ◎169k) 6d │ │ │ │ │ │ │ │
├→ review-zoom-hic-figure-redesign (done · →374k ←39k ◎6.6M §373k · ⌁50) 6d ──────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-review-zoom-hic-figure-redesign (done · →101k ←15k ◎74k) 6d │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-hic-figure-redesign (done · →248k ←9.0k ◎191k) 6d │ │ │ │ │ │ │ │
└→ review-zoom-hic-methods-glossary (done · →212k ←29k ◎6.2M §591k · ⌁50) 6d ─────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
└→ .flip-review-zoom-hic-methods-glossary (done · →200k ←16k ◎172k) 6d │ │ │ │ │ │ │ │
└→ .evaluate-review-zoom-hic-methods-glossary (done · →361k ←13k ◎316k) 6d │ │ │ │ │ │ │ │
.assign-review-zoom-03b-erdos-renyi (done) 6d ──────────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-04-hprcv2-karyogram (done) 6d ──────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-06-length-redesign (done · →16k ←1.0k ◎10k) 6d ─────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-07a-heatmap-tree-pq (done) 6d ──────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-07b-tree-complete-unrooted (done) 6d ───────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-08b-superpop-dispersion (done) 6d ──────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-09-mds-community-leading (done) 6d ─────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-14-gene-background (done) 6d ───────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-14-gene-enrichment-or4f (done) 6d ──────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-density-methods-narrative (done) 6d ────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-hic-figure-redesign (done) 6d ──────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-hic-methods-glossary (done) 6d ─────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-render-bog-annotated-zoom-v2-review-fanin (done) 6d ────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-review-zoom-v3-gene-browser-inventory (done) 6d ────────────────────────────────────────────────────┘ │ │ │ │ │ │ │
.assign-review-zoom-v3-gene-browser-render-assets (done) 6d ────────────────────────────────────────────────────┘ │ │ │ │ │ │
.assign-review-zoom-v3-human-3d-dotplot-correlation (done) 6d ──────────────────────────────────────────────────────┘ │ │ │ │ │
.assign-review-zoom-v3-slide06-violin-censor (done) 6d ─────────────────────────────────────────────────────────────────┘ │ │ │ │
.assign-review-zoom-v3-slide07a-crisp-aligned (done) 6d ────────────────────────────────────────────────────────────────────┘ │ │ │
.assign-review-zoom-v3-slide07c-acrocentric-presence (done) 6d ─────────────────────────────────────────────────────────────────┘ │ │
.assign-review-zoom-v3-slide08b-within-pop-pairwise (done · →16k ←1.1k ◎10k) 6d ────────────────────────────────────────────────────┘ │
.assign-review-zoom-v3-slide09-label-all-communities (done) 6d ─────────────────────────────────────────────────────────────────────────┘
.assign-review-zoom-v3-slide10a-axis-box-fix (done · →16k ←854 ◎10k) 6d ───────────────────────────────────────────────────────────────────
.assign-review-zoom-v3-slide11-wb-labels (done) 6d ────────────────────────────────────────────────────────────────────────────────────────
.assign-render-bog-annotated-zoom-v3-correction-fanin (done · →16k ←3.6k ◎11k) 6d ─────────────────────────────────────────────────────────
.assign-review-zoom-v4-slide10a-xaxis-orientation-fix (done · →16k ←1.1k ◎10k) 5d ─────────────────────────────────────────────────────────
.assign-render-bog-annotated (done · →13k ←1.3k ◎35k) 6d
└→ render-bog-annotated (done · →118k ←47k ◎6.3M §9.7k) 6d
├→ .flip-render-bog-annotated (done · →18k ←5.9k ◎70k) 6d
│ └→ .evaluate-render-bog-annotated (done · →12k ←2.5k ◎35k) 6d
├→ .merge-render-bog-annotated (done · →39k ←8.3k ◎937k) 6d
└→ render-bog-annotated-zoom (done · →824k ←45k ◎7.8M §361k · ⌁50) 6d ✉6 ←─┐
└→ .flip-render-bog-annotated-zoom (done · →289k ←15k ◎245k) 6d │
└→ .evaluate-render-bog-annotated-zoom (done · →34k ←5.8k ◎27k) 6d │
.assign-render-bog-annotated-zoom (done · →16k ←817 ◎10k) 6d ────────────────┘
.assign-fix-bog-review (done · →12k ←2.2k ◎35k) 6d
└→ fix-bog-review (done · →82k ←34k ◎4.7M §10k) 6d
├→ .flip-fix-bog-review (done · →27k ←7.8k ◎70k) 6d
│ └→ .evaluate-fix-bog-review (failed) 6d
└→ .merge-fix-bog-review (failed · →29k ←4.2k ◎388k) 6d
update-abstract-rename (done · →34k ←8.2k ◎469k §4.2k) 7d
├→ lit-review-topic-01 (done · →17k ←1.7k ◎103k §1.9k) 6d ───────────┐
├→ lit-review-topic-02 (done · →11k ←1.3k ◎75k §2.5k) 6d ────────────┤
├→ lit-review-topic-03 (done · →206k ←15k ◎2.2M §8.0k) 6d ───────────┤
├→ lit-review-topic-04 (abandoned) 7d │
├→ lit-review-topic-04-2 (done · →14k ←1.3k ◎75k §2.2k) 6d ──────────┤
├→ lit-review-topic-05 (done · →24k ←1.6k ◎88k §2.7k) 6d ────────────┤
├→ lit-review-topic-05-2 (done · →230k ←21k ◎4.3M §8.9k) 6d ─────────┼ ←─┐
│ ├→ .flip-lit-review-topic-05-2 (done · →28k ←5.0k ◎70k) 6d │ │
│ │ └→ .evaluate-lit-review-topic-05-2 (done · →12k ←3.8k ◎35k) 6d │ │
│ └→ lit-review-v2 (done · →147k ←68k ◎3.8M §13k) 6d ────────────────┼ ──┼ ←─┐
│ ├→ .flip-lit-review-v2 (done · →29k ←8.9k ◎70k) 6d │ │ │
│ │ └→ .evaluate-lit-review-v2 (done · →11k ←3.0k ◎35k) 6d │ │ │
│ └→ render-lit-review (done · →51k ←13k ◎2.5M §9.4k) 6d ──────────┼ ──┼ ──┼ ←─┐
│ └→ .flip-render-lit-review (done · →18k ←4.5k ◎70k) 6d │ │ │ │
│ └→ .evaluate-render-lit-review (done · →11k ←2.6k ◎35k) 6d │ │ │ │
├→ lit-review-topic-06 (done · →10k ←1.3k ◎76k §2.9k) 6d ────────────┤ │ │ │
├→ lit-review-topic-07 (done · →11k ←1.3k ◎74k §2.2k) 6d ────────────┤ │ │ │
├→ lit-review-topic-07-2 (done · →83k ←19k ◎1.7M §8.4k) 6d ──────────┼ ──┼ ──┤ ──┼ ←─┐
│ └→ .flip-lit-review-topic-07-2 (done · →26k ←5.0k ◎70k) 6d │ │ │ │ │
│ └→ .evaluate-lit-review-topic-07-2 (done · →11k ←3.3k ◎35k) 6d │ │ │ │ │
├→ lit-review-topic-08 (done · →16k ←2.0k ◎154k §2.3k) 6d ───────────┤ │ │ │ │
├→ lit-review-topic-09 (done · →9.9k ←1.4k ◎76k §2.2k) 6d ───────────┤ │ │ │ │
├→ lit-review-topic-10 (done · →18k ←2.2k ◎108k §1.4k) 6d ───────────┤ │ │ │ │
├→ lit-review-topic-11 (abandoned) 7d │ │ │ │ │
├→ lit-review-topic-11-2 (done · →218k ←22k ◎3.4M §7.2k) 6d ─────────┤ │ │ │ │
├→ lit-review-topic-12 (done · →21k ←1.3k ◎88k §2.0k) 6d ────────────┤ │ │ │ │
├→ lit-review-topic-13 (done · →14k ←1.7k ◎98k §2.3k) 6d ────────────┤ │ │ │ │
├→ lit-review-topic-14 (done · →14k ←1.6k ◎103k §2.3k) 6d ───────────┤ │ │ │ │
└→ lit-review-synthesis (done · →433k ←6.8k ◎13M) 6d ←───────────────┘ ──┼ ──┤ │ │
.assign-lit-review-topic-05-2 (done) 6d ─────────────────────────────────┘ │ │ │
.assign-lit-review-topic-07-2 (done) 6d ─────────────────────────────────────┼ ──┼ ──┘
.assign-lit-review-v2 (done · →12k ←1.4k ◎35k) 6d ───────────────────────────┘ │
.assign-render-lit-review (done · →13k ←2.2k ◎35k) 6d ───────────────────────────┘
.assign-lit-review-synthesis (done) 6d
.assign-lit-review-topic-04-2 (done) 6d
.assign-lit-review-topic-01 (done) 6d
.assign-lit-review-topic-12 (done) 6d
.assign-lit-review-topic-02 (done) 6d
.assign-lit-review-topic-13 (done) 6d
.assign-lit-review-topic-10 (done) 6d
.assign-lit-review-topic-05 (done) 6d
.assign-lit-review-topic-06 (done) 6d
.assign-lit-review-topic-14 (done) 6d
.assign-lit-review-topic-08 (done) 6d
.assign-lit-review-topic-07 (done) 6d
.assign-lit-review-topic-09 (done) 6d
.assign-lit-review-topic-03 (done) 6d
.assign-lit-review-topic-11-2 (done) 6d
.evaluate-lit-review-topic-04 (failed) 7d
.evaluate-lit-review-topic-11 (failed) 7d
.assign-update-abstract-rename (done) 7d
.assign-build-bog-v2-3 (done · →13k ←2.0k ◎34k) 7d
└→ build-bog-v2-3 (done · →442k ←29k ◎5.7M §11k) 7d
└→ .flip-build-bog-v2-3 (done · →24k ←4.7k ◎68k) 7d
└→ .evaluate-build-bog-v2-3 (done · →12k ←4.1k ◎34k) 7d
.evaluate-lit-review-synthesis (abandoned) 7d
.evaluate-lit-review-topic-11-2 (done · →33k ←7.2k ◎259k) 7d
.evaluate-lit-review-topic-03 (done · →25k ←7.9k ◎247k) 7d
.evaluate-lit-review-topic-02 (done · →10k ←2.5k ◎34k) 7d
.evaluate-lit-review-topic-14 (done · →10k ←2.3k ◎34k) 7d
.evaluate-lit-review-topic-13 (done · →10k ←2.3k ◎34k) 7d
.evaluate-lit-review-topic-09 (done · →10k ←2.2k ◎34k) 7d
.evaluate-lit-review-topic-01 (done · →10k ←1.9k ◎34k) 7d
.evaluate-lit-review-topic-04-2 (done · →10k ←2.2k ◎34k) 7d
.evaluate-lit-review-topic-05 (done · →10k ←2.7k ◎34k) 7d
.evaluate-lit-review-topic-10 (done · →10k ←1.4k ◎34k) 7d
.evaluate-lit-review-topic-12 (done · →10k ←2.0k ◎34k) 7d
.evaluate-lit-review-topic-06 (done · →10k ←2.9k ◎34k) 7d
.evaluate-lit-review-topic-07 (done · →10k ←2.1k ◎34k) 7d
.evaluate-lit-review-topic-08 (done · →10k ←2.3k ◎34k) 7d
.evaluate-update-abstract-rename (done · →13k ←4.2k ◎34k) 7d
.assign-build-bog-v2-2 (done · →12k ←2.1k ◎34k) 7d
└→ build-bog-v2-2 (done · →186k ←55k ◎15M §9.2k) 7d
└→ .flip-build-bog-v2-2 (done · →18k ←4.3k ◎68k) 7d
└→ .evaluate-build-bog-v2-2 (done · →11k ←2.7k ◎34k) 7d
.coordinator-2 (abandoned) 1mo [turn 0]
├→ .archive-2 (abandoned) 1mo
├→ .compact-2 (abandoned) 1mo
└→ .flip-.coordinator-2 (open) 1mo
└→ .evaluate-.coordinator-2 (open) 1mo
.coordinator-3 (abandoned) 1mo [turn 0]
├→ .archive-3 (abandoned) 1mo
├→ .compact-3 (abandoned) 1mo
└→ .flip-.coordinator-3 (open) 1mo
└→ .evaluate-.coordinator-3 (open) 1mo
.assign-build-bog-brainstorm (done · →12k ←1.8k ◎34k) 7d
└→ ‖ build-bog-brainstorm (abandoned · §1.8k) 7d
└→ .flip-build-bog-brainstorm (abandoned) 7d
└→ .evaluate-build-bog-brainstorm (abandoned) 7d
‖ build-bog-v2 (abandoned) 7d
.assign-bog-v2-slide-07 (done) 7d
└→ bog-v2-slide-07 (done · →103k ←15k ◎2.1M §11k) 7d ←─────────┐
├→ .flip-bog-v2-slide-07 (done · →21k ←6.8k ◎68k) 7d │
│ └→ .evaluate-bog-v2-slide-07 (done · →16k ←3.6k ◎78k) 7d │
└→ bog-v2-slides (done · →138k ←34k ◎2.1M §10k) 7d ──────────┼ ←─┐
└→ .flip-bog-v2-slides (done · →27k ←5.7k ◎68k) 7d │ │
└→ .evaluate-bog-v2-slides (done · →10k ←3.2k ◎34k) 7d │ │
.assign-bog-v2-slides (done · →11k ←1.5k ◎34k) 7d ─────────────┼ ──┤
.assign-nj-tree-from (done) 7d │ │
└→ nj-tree-from (done · →110k ←32k ◎4.3M §8.7k) 7d ────────────┘ │
└→ .flip-nj-tree-from (done · →23k ←5.3k ◎68k) 7d │
└→ .evaluate-nj-tree-from (done · →10k ←3.4k ◎34k) 7d │
.assign-bog-v2-slide-01 (done) 7d │
└→ bog-v2-slide-01 (done · →50k ←8.6k ◎1.1M §12k) 7d ──────────────┤
└→ .flip-bog-v2-slide-01 (done · →17k ←8.2k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-01 (done · →10k ←3.3k ◎34k) 7d │
.assign-bog-v2-slide-02 (done · →11k ←2.2k ◎34k) 7d │
└→ bog-v2-slide-02 (done · →51k ←8.7k ◎1.9M §11k) 7d ──────────────┤
└→ .flip-bog-v2-slide-02 (done · →17k ←5.7k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-02 (done · →10k ←3.2k ◎34k) 7d │
.assign-bog-v2-slide-03 (done · →11k ←1.5k ◎34k) 7d │
└→ bog-v2-slide-03 (done · →55k ←13k ◎1.6M §12k) 7d ───────────────┤
└→ .flip-bog-v2-slide-03 (done · →19k ←6.5k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-03 (done · →14k ←3.8k ◎78k) 7d │
.assign-bog-v2-slide-04 (done · →11k ←1.8k ◎34k) 7d │
└→ bog-v2-slide-04 (done · →45k ←9.2k ◎1.1M §10k) 7d ──────────────┤
└→ .flip-bog-v2-slide-04 (done · →18k ←4.9k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-04 (done · →10k ←3.5k ◎34k) 7d │
.assign-bog-v2-slide-05 (done · →11k ←1.7k ◎34k) 7d │
└→ bog-v2-slide-05 (done · →48k ←13k ◎1.6M §12k) 7d ───────────────┤
└→ .flip-bog-v2-slide-05 (done · →18k ←6.5k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-05 (done · →10k ←3.8k ◎34k) 7d │
.assign-bog-v2-slide-06 (done) 7d │
└→ bog-v2-slide-06 (done · →71k ←17k ◎2.4M §14k) 7d ───────────────┤
└→ .flip-bog-v2-slide-06 (done · →21k ←8.4k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-06 (done · →39k ←5.5k ◎194k) 7d │
.assign-bog-v2-slide-08 (done · →12k ←1.7k ◎34k) 7d │
└→ bog-v2-slide-08 (done · →74k ←14k ◎2.9M §10k) 7d ───────────────┤
└→ .flip-bog-v2-slide-08 (done · →20k ←4.9k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-08 (done · →10k ←3.5k ◎34k) 7d │
.assign-bog-v2-slide-09 (done) 7d │
└→ bog-v2-slide-09 (done · →82k ←22k ◎2.8M §9.8k) 7d ──────────────┤
└→ .flip-bog-v2-slide-09 (done · →21k ←7.4k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-09 (done · →10k ←2.4k ◎34k) 7d │
.assign-bog-v2-slide-10 (done · →11k ←2.2k ◎34k) 7d │
└→ bog-v2-slide-10 (done · →63k ←8.2k ◎1.4M §11k) 7d ──────────────┤
└→ .flip-bog-v2-slide-10 (done · →20k ←4.9k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-10 (done · →14k ←3.9k ◎78k) 7d │
.assign-bog-v2-slide-11 (done · →11k ←1.3k ◎34k) 7d │
└→ bog-v2-slide-11 (done · →43k ←8.5k ◎977k §10k) 7d ──────────────┤
└→ .flip-bog-v2-slide-11 (done · →19k ←4.2k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-11 (done · →14k ←4.7k ◎78k) 7d │
.assign-bog-v2-slide-12 (done) 7d │
└→ bog-v2-slide-12 (done · →72k ←16k ◎2.6M §6.8k) 7d ──────────────┤
└→ .flip-bog-v2-slide-12 (done · →16k ←4.3k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-12 (done · →10k ←2.5k ◎34k) 7d │
.assign-bog-v2-slide-13 (done · →12k ←1.6k ◎34k) 7d │
└→ bog-v2-slide-13 (done · →91k ←12k ◎1.6M §11k) 7d ───────────────┤
└→ .flip-bog-v2-slide-13 (done · →22k ←6.7k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-13 (done · →10k ←3.1k ◎34k) 7d │
.assign-bog-v2-slide-14 (done · →12k ←1.4k ◎34k) 7d │
└→ bog-v2-slide-14 (done · →104k ←21k ◎4.4M §12k) 7d ──────────────┤
└→ .flip-bog-v2-slide-14 (done · →23k ←6.5k ◎68k) 7d │
└→ .evaluate-bog-v2-slide-14 (done · →17k ←3.7k ◎78k) 7d │
.assign-bog-v2-slide-15 (done · →11k ←1.5k ◎34k) 7d │
└→ bog-v2-slide-15 (done · →60k ←9.9k ◎1.3M §14k) 7d ──────────────┘
└→ .flip-bog-v2-slide-15 (done · →20k ←7.7k ◎68k) 7d
└→ .evaluate-bog-v2-slide-15 (done · →15k ←4.7k ◎78k) 7d
.assign-improve-bog-slides (done) 7d
└→ ‖ improve-bog-slides (abandoned) 7d
└→ .flip-improve-bog-slides (abandoned) 7d
└→ .evaluate-improve-bog-slides (abandoned) 7d
.assign-read-end-to (done · →13k ←1.4k ◎34k) 7d
└→ read-end-to (done · →234k ←35k ◎4.0M §15k) 7d
└→ .flip-read-end-to (done · →28k ←6.6k ◎68k) 7d
└→ .evaluate-read-end-to (done · →12k ←6.9k ◎34k) 7d
.assign-audit-canonical-materials (done) 7d
└→ audit-canonical-materials (done · →229k ←48k ◎10M §9.5k) 7d ←─────────┐
└→ .flip-audit-canonical-materials (done · →27k ←6.3k ◎68k) 7d │
└→ .evaluate-audit-canonical-materials (done · →11k ←3.2k ◎34k) 7d │
.assign-park-off-target (done · →46k ←1.8k) 7d │
└→ park-off-target (done · →172k ←51k ◎4.8M §8.5k) 7d ───────────────────┘
└→ .flip-park-off-target (done · →21k ←3.2k ◎68k) 7d
└→ .evaluate-park-off-target (done · →11k ←3.5k ◎34k) 7d
‖ audit-existing-manuscript (abandoned) 7d
.assign-render-manuscript-draft-4 (done · →12k ←1.7k ◎34k) 7d
└→ render-manuscript-draft-4 (done · →77k ←19k ◎3.8M §7.8k) 7d
└→ .flip-render-manuscript-draft-4 (done · →26k ←3.7k ◎68k) 7d
└→ .evaluate-render-manuscript-draft-4 (done · →11k ←2.4k ◎34k) 7d
.assign-render-manuscript-draft-3 (done · →45k ←1.4k) 7d
└→ ‖ render-manuscript-draft-3 (abandoned · §1.4k) 7d
└→ .flip-render-manuscript-draft-3 (abandoned) 7d
└→ .evaluate-render-manuscript-draft-3 (abandoned) 7d
.assign-render-manuscript-draft-2 (done · →45k ←1.8k) 8d
└→ render-manuscript-draft-2 (failed · →192k ←3.4k ◎3.2M §1.8k) 8d
└→ .flip-render-manuscript-draft-2 (failed) 8d
.evaluate-render-manuscript-draft-2 (failed) 8d
‖ render-manuscript-draft (abandoned) 8d
.assign-survey-pipeline-section (done) 8d
└→ survey-pipeline-section (done · →12k ←4.4k ◎1.9M §11k) 8d
├→ .flip-survey-pipeline-section (done · →15k ←3.6k ◎68k) 8d
│ └→ .evaluate-survey-pipeline-section (done · →21k ←7.0k ◎77k) 8d
├→ .merge-survey-pipeline-section (done · →11k ←5.9k ◎1.1M) 8d
└→ synthesize-paper-rough (done · →709 ←24 ◎263k §13k) 8d ←─────────────────────────────┐
├→ .flip-synthesize-paper-rough (done · →27k ←7.3k ◎68k) 8d │
│ └→ .evaluate-synthesize-paper-rough (done · →11k ←4.0k ◎34k) 8d │
├→ figure-1-landscape-communities (done · →692 ←45 ◎139k §11k) 8d ────────────────────┼ ←─┐
│ ├→ .flip-figure-1-landscape-communities (done · →23k ←7.3k ◎68k · ⌁5) 8d │ │
│ │ └→ .evaluate-figure-1-landscape-communities (done · →10k ←3.2k ◎34k · ⌁5) 8d │ │
│ └→ compile-manuscript-draft (done · →885 ←86 ◎134k §11k) 8d ────────────────────────┼ ──┼ ←─┐
│ └→ .flip-compile-manuscript-draft (done · →26k ←4.5k ◎68k · ⌁5) 8d │ │ │
│ └→ .evaluate-compile-manuscript-draft (done · →9.7k ←4.4k ◎34k · ⌁5) 8d │ │ │
├→ figure-2-heterogeneity-population (done · →104k ←33k ◎5.0M §8.4k) 8d ──────────────┼ ──┼ ──┤ ←─┐
│ └→ .flip-figure-2-heterogeneity-population (done · →25k ←6.2k ◎68k · ⌁5) 8d │ │ │ │
│ └→ .evaluate-figure-2-heterogeneity-population (done · →10k ←2.2k ◎34k · ⌁5) 8d │ │ │ │
├→ figure-3-3d-convergence (done · →132k ←52k ◎10M §8.7k) 8d ─────────────────────────┼ ──┼ ──┤ ──┼ ←─┐
│ └→ .flip-figure-3-3d-convergence (done · →27k ←3.5k ◎68k · ⌁5) 8d │ │ │ │ │
│ └→ .evaluate-figure-3-3d-convergence (done · →10k ←5.2k ◎34k · ⌁5) 8d │ │ │ │ │
├→ figure-4-pedigree-mouse (done · →163k ←47k ◎10M §9.3k) 8d ─────────────────────────┼ ──┼ ──┤ ──┼ ──┼ ←─┐
│ └→ .flip-figure-4-pedigree-mouse (done · →28k ←5.1k ◎68k · ⌁5) 8d │ │ │ │ │ │
│ └→ .evaluate-figure-4-pedigree-mouse (done · →10k ←2.7k ◎34k · ⌁5) 8d │ │ │ │ │ │
├→ figure-ed1-ed2-pipeline-seqlevel (done · →232 ←23 ◎170k §12k) 8d ──────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-figure-ed1-ed2-pipeline-seqlevel (done · →19k ←9.5k ◎68k · ⌁5) 8d │ │ │ │ │ │ │
│ └→ .evaluate-figure-ed1-ed2-pipeline-seqlevel (done · →9 ←2.5k ◎44k · ⌁5) 8d │ │ │ │ │ │ │
├→ figure-ed3-ed4-annotation-genes (done · →560 ←61 ◎138k §12k) 8d ───────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-figure-ed3-ed4-annotation-genes (done · →22k ←8.4k ◎68k · ⌁5) 8d │ │ │ │ │ │ │ │
│ └→ .evaluate-figure-ed3-ed4-annotation-genes (done · →10k ←4.0k ◎34k · ⌁5) 8d │ │ │ │ │ │ │ │
├→ figure-ed5-hic-robustness (done · →132k ←37k ◎5.6M §7.3k) 8d ──────────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-figure-ed5-hic-robustness (done · →15k ←2.6k ◎68k · ⌁5) 8d │ │ │ │ │ │ │ │ │
│ └→ .evaluate-figure-ed5-hic-robustness (done · →9.8k ←3.0k ◎34k · ⌁5) 8d │ │ │ │ │ │ │ │ │
├→ figure-ed6-ed7-singlecell-mouse (done · →130k ←31k ◎5.2M §8.3k) 8d ────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-figure-ed6-ed7-singlecell-mouse (done · →16k ←5.9k ◎68k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-figure-ed6-ed7-singlecell-mouse (done · →9.9k ←2.3k ◎34k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │
├→ figure-ed8-discussion-models (done · →170k ←56k ◎11M §11k) 8d ─────────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-figure-ed8-discussion-models (done · →26k ←5.7k ◎68k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-figure-ed8-discussion-models (done · →10k ←3.2k ◎34k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │ │
├→ validate-acceptance-checklist (done · →83k ←21k ◎1.7M §15k) 8d ────────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-validate-acceptance-checklist (done · →24k ←8.4k ◎68k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-validate-acceptance-checklist (done · →9.7k ←4.2k ◎34k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │ │ │
├→ validate-captions-references (done · →95k ←22k ◎2.2M §5.1k) 8d ────────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-validate-captions-references (done · →27k ←5.1k ◎68k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-validate-captions-references (failed · ⌁5) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
├→ validate-reproducibility-paths (done · →225k ←44k ◎7.3M §12k) 8d ──────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-validate-reproducibility-paths (done · →28k ←6.2k ◎68k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-validate-reproducibility-paths (done · →9.6k ←3.4k ◎34k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ validate-statistics-fdr-cis (done · →201k ←38k ◎7.2M §11k) 8d ─────────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
└→ .flip-validate-statistics-fdr-cis (done · →28k ←5.1k ◎68k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-validate-statistics-fdr-cis (done · →9.7k ←5.8k ◎34k · ⌁5) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-annotation-section (done) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-annotation-section (done · →809 ←56 ◎62k §7.6k) 8d ─────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
├→ .flip-survey-annotation-section (done · →15k ←3.3k ◎67k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-survey-annotation-section (done · →16k ←4.3k ◎76k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .merge-survey-annotation-section (done · →94k ←18k ◎2.7M) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-gene-enrichment (done · →11k ←2.1k ◎33k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-gene-enrichment (done · →334 ←32 ◎171k §11k) 8d ────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-gene-enrichment (done · →15k ←3.8k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-gene-enrichment (done · →30k ←5.2k ◎490k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-heterogeneity-section (done · →11k ←2.0k ◎33k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-heterogeneity-section (done · →140 ←26 ◎112k §9.5k) 8d ─────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
├→ .flip-survey-heterogeneity-section (done · →15k ←4.1k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-survey-heterogeneity-section (done · →20k ←3.3k ◎77k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .merge-survey-heterogeneity-section (done · →256k ←95k ◎58M) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-hi-c (done · →11k ←1.7k ◎33k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-hi-c (done · →106 ←9 ◎98k §12k) 8d ─────────────────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
├→ .flip-survey-hi-c (done · →15k ←5.2k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-survey-hi-c (done · →20k ←5.1k ◎77k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .merge-survey-hi-c (done · →40k ←12k ◎1.4M) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-dip-c (done · →11k ←2.0k ◎33k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-dip-c (done · →223 ←92 ◎187k §11k) 8d ──────────────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
├→ .flip-survey-dip-c (done · →15k ←3.8k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-survey-dip-c (done · →18k ←4.9k ◎77k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .merge-survey-dip-c (done · →3.6k ←1.7k ◎340k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-cytogenetic-fish (done · →45k ←2.1k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-cytogenetic-fish (done · →114k ←18k ◎1.8M §11k) 8d ─────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-cytogenetic-fish (done · →25k ←4.2k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-cytogenetic-fish (done · →20k ←4.7k ◎78k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-rpe-1-self (done · →11k ←1.7k ◎34k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-rpe-1-self (done · →69k ←18k ◎1.2M §8.0k) 8d ───────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-rpe-1-self (done · →25k ←4.1k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-rpe-1-self (done · →9.4k ←2.2k ◎34k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-figure-inventory (done · →11k ←1.6k ◎34k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-figure-inventory (done · →79k ←22k ◎2.6M §9.5k) 8d ─────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-figure-inventory (done · →21k ←4.7k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-figure-inventory (done · →9.7k ←3.1k ◎34k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-pedigree-recombination (done · →11k ←1.8k ◎34k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-pedigree-recombination (done · →117k ←24k ◎3.2M §12k) 8d ───────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-pedigree-recombination (done · →26k ←7.4k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-pedigree-recombination (done · →9.6k ←2.6k ◎34k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-integrated-interpretation (done · →11k ←1.8k ◎34k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-integrated-interpretation (done · →69k ←17k ◎861k §12k) 8d ─────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-integrated-interpretation (done · →26k ←4.8k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-integrated-interpretation (done · →21k ←5.7k ◎77k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-mouse-cross (done · →11k ←2.4k ◎34k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-mouse-cross (done · →70k ←22k ◎1.1M §10k) 8d ───────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-mouse-cross (done · →28k ←5.7k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-mouse-cross (done · →9.4k ←2.0k ◎34k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-data-table (done) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-data-table (done · →73k ←14k ◎1.5M §7.4k) 8d ───────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-data-table (done · →20k ←4.3k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-data-table (done · →15k ←3.1k ◎77k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-limitations-summary (done) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-limitations-summary (done · →75k ←24k ◎1.9M §10k) 8d ───────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-limitations-summary (done · →26k ←7.0k ◎68k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-limitations-summary (done · →9.4k ←3.0k ◎34k) 8d │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-synthesize-paper-rough (done · →11k ←1.5k ◎34k) 8d ───────────────────────────────┘ │ │ │ │ │ │ │ │ │ │ │ │
.assign-validate-reproducibility-paths (done · →11k ←2.1k ◎34k) 8d ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-validate-captions-references (done) 8d ───────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘
.assign-figure-ed5-hic-robustness (done · →11k ←1.7k ◎34k) 8d ────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘ │ │ │
.assign-figure-2-heterogeneity-population (done) 8d ──────────────────────────────────────────┼ ──┼ ──┘ │ │ │ │ │ │ │
.assign-figure-1-landscape-communities (done) 8d ─────────────────────────────────────────────┘ │ │ │ │ │ │ │ │
.assign-validate-acceptance-checklist (done · →11k ←2.2k ◎34k) 8d ────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──────┼ ──┼ ──┘
.assign-figure-ed8-discussion-models (done · →11k ←1.8k ◎34k) 8d ─────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──────┼ ──┘
.assign-validate-statistics-fdr-cis (done) 8d ────────────────────────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──────┼ ───────────
.assign-figure-ed1-ed2-pipeline-seqlevel (done) 8d ───────────────────────────────────────────────┼ ──────┼ ──┼ ──┘ │ │
.assign-figure-ed3-ed4-annotation-genes (done) 8d ────────────────────────────────────────────────┼ ──────┼ ──┼ ──────┘ │
.assign-figure-3-3d-convergence (done) 8d ────────────────────────────────────────────────────────┼ ──────┘ │ │
.assign-figure-ed6-ed7-singlecell-mouse (done) 8d ────────────────────────────────────────────────┼ ──────────┼ ──────────────┘
.assign-figure-4-pedigree-mouse (done · →11k ←1.4k ◎34k) 8d ──────────────────────────────────────┼ ──────────┘
.assign-compile-manuscript-draft (done · →11k ←1.7k ◎34k) 8d ─────────────────────────────────────┘
.coordinator-1 (abandoned) 1mo [turn 54]
├→ .archive-1 (abandoned) 1mo
├→ .compact-1 (abandoned) 1mo
└→ .flip-.coordinator-1 (open) 1mo
└→ .evaluate-.coordinator-1 (open) 1mo
.coordinator-0 (abandoned) 1mo [turn 1] ←───────────┐
├→ .archive-0 (abandoned · §4.1k) 1mo ↺ (iter 1) │
├→ .compact-0 (abandoned) 1mo │
├→ .flip-.coordinator-0 (open) 1mo │
│ └→ .evaluate-.coordinator-0 (open) 1mo │
└→ .registry-refresh-0 (abandoned) 1mo ─────────────┘
└→ .flip-.registry-refresh-0 (open) 1mo
└→ .evaluate-.registry-refresh-0 (open) 1mo
.assign-write-feedback-document (done · →12k ←2.2k ◎26k) 11d
└→ write-feedback-document (done · →17k ←3.6k ◎75k §10k) 11d ✉1
.assign-merge-archive-into-graph (done · →12k ←1.2k ◎26k) 11d
└→ merge-archive-into-graph (done · →145k ←50k ◎9.8M §12k) 11d
└→ .flip-merge-archive-into-graph (done · →18k ←6.8k ◎51k) 11d
└→ .evaluate-merge-archive-into-graph (done · →12k ←3.5k ◎26k) 11d
.evaluate-.compact-2 (failed) 1mo
.evaluate-.archive-2 (failed) 1mo
.evaluate-.compact-0 (failed) 1mo
.evaluate-.archive-1 (failed) 1mo
.flip-.compact-2 (failed) 1mo
.flip-.archive-1 (failed) 1mo
.flip-.archive-2 (failed) 1mo
.evaluate-.compact-3 (failed) 1mo
.evaluate-.archive-3 (failed) 1mo
.evaluate-.compact-1 (failed) 1mo
.flip-.compact-0 (failed) 1mo
.flip-.archive-3 (failed) 1mo
.flip-.compact-3 (failed) 1mo
.flip-.compact-1 (failed) 1mo
.user-erikg-0 (abandoned) 1mo ✉56
└→ .flip-.user-erikg-0 (open) 1mo
└→ .evaluate-.user-erikg-0 (open) 1mo
.evolve-partition-run-20260402-235845 (done) 1mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-235845 (done · →32k ←5.4k ◎260k) 1mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-235845 (done · →63k ←24k ◎1.4M) 1mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-235845 (done · →52k ←9.3k ◎991k) 1mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-235845 (done · →40k ←8.0k ◎467k) 1mo ──────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-235845 (done · →77k ←10k ◎887k) 1mo ────────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-235845 (done · →55k ←8.7k ◎818k) 1mo ──┤
├→ .evolve-analyze-mutation-run-20260402-235845 (done · →45k ←6.5k ◎784k) 1mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-235845 (done · →43k ←7.7k ◎653k) 1mo ──────┤
└→ .evolve-synthesize-run-20260402-235845 (done · →51k ←27k ◎763k) 1mo ←─────────────────┘
└→ .evolve-apply-run-20260402-235845 (done · →46k ←7.8k ◎1.0M) 1mo
└→ .evolve-evaluate-run-20260402-235845 (done · →50k ←9.8k ◎748k) 1mo
.flip-reformat-gene-family (done · →12k ←3.3k ◎37k) 1mo
└→ .evaluate-reformat-gene-family (done · →14k ←3.1k ◎56k) 1mo
.assign-build-community-legend (done · →22k ←1.2k ◎7.8k) 1mo
└→ build-community-legend (done · →33k ←3.8k ◎264k §5.7k) 1mo
└→ reformat-gene-family (done · →63k ←12k ◎1.2M §11k) 1mo ←─┐
.assign-reformat-gene-family (done) 1mo ──────────────────────┘
.flip-build-community-legend (done · →20k ←2.7k ◎26k) 1mo
└→ .evaluate-build-community-legend (done · →4.0k ←1.8k ◎26k) 1mo
.flip-fix-executive-summary (done · →13k ←2.2k ◎37k) 1mo
└→ .evaluate-fix-executive-summary (done · →13k ←3.6k ◎92k) 1mo
.assign-fix-executive-summary (done · →23k ←1.1k ◎7.8k) 1mo
└→ fix-executive-summary (done · →37k ←8.5k ◎634k §7.0k) 1mo
.flip-executive-summary-combined (done · →22k ←2.6k ◎30k) 1mo
└→ .evaluate-executive-summary-combined (done · →27k ←5.9k ◎444k) 1mo
.assign-executive-summary-combined (done · →5.2k ←1.4k ◎26k) 1mo
└→ executive-summary-combined (done · →67k ←11k ◎1.6M §10k) 1mo
.flip-write-bug-report (done · →20k ←2.2k ◎26k) 1mo
└→ .evaluate-write-bug-report (done · →4.3k ←1.9k ◎26k) 1mo
.assign-write-bug-report (done · →23k ←1.0k ◎7.8k) 1mo
└→ write-bug-report (done · →17k ←3.0k ◎171k §5.2k) 1mo
.evolve-partition-run-20260402-150803 (done) 1mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-150803 (done · →38k ←7.7k ◎531k) 1mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-150803 (done · →61k ←17k ◎1.5M) 1mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-150803 (done · →37k ←7.4k ◎848k) 1mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-150803 (done · →31k ←11k ◎594k) 1mo ───────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-150803 (done · →29k ←10.0k ◎459k) 1mo ──────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-150803 (done · →42k ←10k ◎725k) 1mo ───┤
├→ .evolve-analyze-mutation-run-20260402-150803 (done · →27k ←6.5k ◎487k) 1mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-150803 (done · →16k ←5.6k ◎395k) 1mo ──────┤
└→ .evolve-synthesize-run-20260402-150803 (done · →46k ←24k ◎623k) 1mo ←─────────────────┘
└→ .evolve-apply-run-20260402-150803 (done · →37k ←6.2k ◎1.0M) 1mo
└→ .evolve-evaluate-run-20260402-150803 (done · →33k ←11k ◎447k) 1mo
.evolve-partition-run-20260402-150503 (done) 1mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-150503 (done · →30k ←6.6k ◎370k) 1mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-150503 (done · →48k ←17k ◎1.3M) 1mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-150503 (done · →49k ←9.7k ◎978k) 1mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-150503 (done · →36k ←12k ◎685k) 1mo ───────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-150503 (done · →34k ←12k ◎395k) 1mo ────────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-150503 (done · →40k ←9.6k ◎871k) 1mo ──┤
├→ .evolve-analyze-mutation-run-20260402-150503 (done · →27k ←5.6k ◎522k) 1mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-150503 (done · →38k ←6.4k ◎378k) 1mo ──────┤
└→ .evolve-synthesize-run-20260402-150503 (done · →47k ←25k ◎472k) 1mo ←─────────────────┘
└→ .evolve-apply-run-20260402-150503 (done · →38k ←8.7k ◎1.2M) 1mo
└→ .evolve-evaluate-run-20260402-150503 (done · →37k ←12k ◎742k) 1mo
.flip-bug-report-wg (done · →9.6k ←1.9k ◎37k) 1mo
└→ .evaluate-bug-report-wg (done · →5.0k ←2.2k ◎26k) 1mo ←─────┐
.assign-.verify-bug-report-wg (done) 1mo │
└→ .verify-bug-report-wg (done · →31k ←3.5k ◎297k §5.0k) 1mo ──┘
└→ .flip-.verify-bug-report-wg (done · →10k ←3.3k ◎37k) 1mo
└→ .evaluate-.verify-bug-report-wg (done · →5.1k ←1.7k ◎26k) 1mo
.assign-bug-report-wg (done · →3.1k ←1.3k ◎26k) 1mo
└→ bug-report-wg (done · →21k ←4.4k ◎565k §8.9k) 1mo
.flip-fact-check-validate (done · →17k ←2.9k ◎30k) 1mo
└→ .evaluate-fact-check-validate (done · →13k ←2.8k ◎56k) 1mo
.assign-fix-ensure-all (done · →2.8k ←1.1k ◎26k) 1mo
└→ fix-ensure-all (done · →42k ←17k ◎3.5M §5.3k) 1mo
└→ fact-check-validate (done · →58k ←16k ◎1.9M §6.8k) 1mo ←─┐
.assign-fact-check-validate (done · →3.2k ←1.1k ◎26k) 1mo ────┘
.flip-fix-ensure-all (done · →18k ←2.4k ◎37k) 1mo
└→ .evaluate-fix-ensure-all (done · →4.5k ←1.7k ◎26k) 1mo
.flip-urgent-validate-and (done · →11k ←2.6k ◎37k) 1mo
└→ .evaluate-urgent-validate-and (done · →5.0k ←2.6k ◎26k) 1mo
.assign-urgent-validate-and (done · →21k ←978 ◎7.8k) 1mo
└→ urgent-validate-and (done · →67k ←25k ◎3.7M §6.2k) 1mo ↩3
.flip-integrate-tubb8-literature (done · →15k ←2.5k ◎37k) 1mo
└→ .evaluate-integrate-tubb8-literature (done · →26k ←4.4k ◎505k) 1mo
.assign-deep-research-or4f (done) 1mo
└→ deep-research-or4f (done · →33k ←4.8k ◎488k §5.2k) 1mo
├→ multi-copy-or (done · →29k ←6.0k ◎490k §5.0k) 1mo ←────────────────────┐
│ └→ integrate-or4f-deep (done · →38k ←9.5k ◎675k §5.7k) 1mo ─────────────┼ ←─┐
├→ or4f-copy-number (done · →24k ←6.7k ◎574k §5.1k) 1mo ──────────────────┼ ──┤ ←─┐
├→ or4f-disease-associations (done · →19k ←4.8k ◎306k §5.3k) 1mo ─────────┼ ──┤ ──┼ ←─┐
├→ or4f-functional-characterization (done · →33k ←7.3k ◎854k §5.9k) 1mo ──┼ ──┤ ──┼ ──┼ ←─┐
├→ phr-or-biology (done · →42k ←9.2k ◎1.1M §5.6k) 1mo ────────────────────┼ ──┤ ──┼ ──┼ ──┼ ←─┐
├→ subtelomeric-or-gene (done · →22k ←5.4k ◎385k §5.1k) 1mo ──────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ←─┐
└→ synthesis-integrate-deep (done · →48k ←7.4k ◎690k §5.0k) 1mo ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
.assign-synthesis-integrate-deep (done) 1mo ────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤
.assign-deep-research-dux4 (done) 1mo │ │ │ │ │ │ │ │
└→ deep-research-dux4 (done · →39k ←12k ◎696k §5.3k) 1mo ───────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤
.assign-deep-research-tubb8 (done · →2.8k ←1.2k ◎26k) 1mo │ │ │ │ │ │ │ │
└→ deep-research-tubb8 (done · →47k ←9.1k ◎938k §6.1k) 1mo ─────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤
├→ tubb8-basic-biology (done · →17k ←4.3k ◎252k §5.9k) 1mo ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ tubb8-research-synthesis (done · →64k ←18k ◎1.3M §5.9k) 1mo ─────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
├→ tubb8-copy-number (done · →57k ←17k ◎1.9M §7.0k) 1mo ──────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ←─┐
│ ├→ tubb8-assembly-comparison (done · →36k ←7.7k ◎959k §7.8k) 1mo ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ └→ integrate-tubb8-literature (done · →32k ←11k ◎951k §8.8k) 1mo ─────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ ├→ tubb8-copy-number-2 (done · →40k ←14k ◎1.4M §7.2k) 1mo ──────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ←─┐
│ ├→ tubb8-copy-number-3 (done · →40k ←14k ◎1.3M §5.7k) 1mo ──────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ←─┐
│ ├→ tubb8-functional-vs (done · →39k ←6.1k ◎666k §4.8k) 1mo ─────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ←─┐
│ └→ tubb8b-copy-number (done · →38k ←15k ◎772k §5.7k) 1mo ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ←
├→ tubb8-mutations-and (done · →26k ←7.0k ◎328k §4.8k) 1mo ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
├→ tubb8-t2t-assembly (done · →20k ←6.3k ◎293k §5.5k) 1mo ────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
├→ tubb8b-paralog-characterization (done · →30k ←9.2k ◎507k §7.6k) 1mo ───┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
└→ tubulin-subtelomeric-positioning (done · →29k ←9.3k ◎460k §5.4k) 1mo ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-deep-research-gtp (done) 1mo │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
└→ deep-research-gtp (done · →44k ←11k ◎867k §5.8k) 1mo ────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘ │ │ │ │ │ │ │ │
.assign-or4f-copy-number (done) 1mo ────────────────────────────────────────┼ ──┼ ──┘ │ │ │ │ │ │ │ │ │ │ │ │
.assign-or4f-disease-associations (done) 1mo ───────────────────────────────┼ ──┼ ──────┘ │ │ │ │ │ │ │ │ │ │ │
.assign-phr-or-biology (done · →2.5k ←1.0k ◎26k) 1mo ───────────────────────┼ ──┼ ──────────┼ ──┘ │ │ │ │ │ │ │ │ │
.assign-subtelomeric-or-gene (done) 1mo ────────────────────────────────────┼ ──┼ ──────────┼ ──────┘ │ │ │ │ │ │ │ │
.assign-or4f-functional-characterization (done · →2.5k ←1.3k ◎26k) 1mo ─────┼ ──┼ ──────────┘ │ │ │ │ │ │ │ │
.assign-multi-copy-or (done) 1mo ───────────────────────────────────────────┘ │ │ │ │ │ │ │ │ │
.assign-tubulin-subtelomeric-positioning (done · →2.5k ←1.1k ◎26k) 1mo ─────────┼ ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-tubb8b-paralog-characterization (done · →9.4k ←1.3k ◎19k) 1mo ──────────┼ ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-tubb8-mutations-and (done) 1mo ─────────────────────────────────────────┼ ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-tubb8-t2t-assembly (done · →2.5k ←1.3k ◎26k) 1mo ───────────────────────┼ ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-tubb8-copy-number (done · →2.5k ←1.4k ◎26k) 1mo ────────────────────────┼ ──────────────────────────┼ ──┼ ──┘ │ │ │ │ │
.assign-tubb8-basic-biology (done · →2.4k ←841 ◎26k) 1mo ───────────────────────┼ ──────────────────────────┘ │ │ │ │ │ │
.assign-integrate-or4f-deep (done · →2.6k ←1.1k ◎26k) 1mo ──────────────────────┘ │ │ │ │ │ │
.assign-tubb8-research-synthesis (done) 1mo ────────────────────────────────────────────────────────────────────┘ │ │ │ │ │
.assign-tubb8-assembly-comparison (done) 1mo ───────────────────────────────────────────────────────────────────────────┘ │ │ │ │
.assign-tubb8-copy-number-2 (done) 1mo ─────────────────────────────────────────────────────────────────────────────────────┼ ──┘ │ │
.assign-tubb8b-copy-number (done) 1mo ──────────────────────────────────────────────────────────────────────────────────────┼ ──────┼ ──┼ ─
.assign-tubb8-functional-vs (done) 1mo ─────────────────────────────────────────────────────────────────────────────────────┼ ──────┼ ──┘
.assign-tubb8-copy-number-3 (done · →9.4k ←1.2k ◎19k) 1mo ──────────────────────────────────────────────────────────────────┼ ──────┘
.assign-integrate-tubb8-literature (done · →2.5k ←1.8k ◎26k) 1mo ───────────────────────────────────────────────────────────┘
.flip-tubb8-research-synthesis (done · →11k ←3.0k ◎73k) 1mo
└→ .evaluate-tubb8-research-synthesis (done · →11k ←2.8k ◎221k) 1mo
.flip-tubb8-copy-number-2 (done · →11k ←4.6k ◎37k) 1mo
└→ .evaluate-tubb8-copy-number-2 (done · →7.0k ←2.6k ◎56k) 1mo
.flip-tubb8-copy-number-3 (done · →16k ←2.6k ◎37k) 1mo
└→ .evaluate-tubb8-copy-number-3 (done · →16k ←1.8k ◎110k) 1mo
.flip-tubb8-assembly-comparison (done · →13k ←4.5k ◎37k) 1mo
└→ .evaluate-tubb8-assembly-comparison (done · →26k ←3.2k ◎285k) 1mo
.flip-tubb8b-copy-number (done · →13k ←3.5k ◎37k) 1mo
└→ .evaluate-tubb8b-copy-number (done · →8.1k ←2.2k ◎56k) 1mo
.flip-tubb8-functional-vs (done · →12k ←2.7k ◎37k) 1mo
└→ .evaluate-tubb8-functional-vs (done · →14k ←2.1k ◎55k) 1mo
.flip-integrate-or4f-deep (done · →23k ←2.6k ◎30k) 1mo
└→ .evaluate-integrate-or4f-deep (done · →18k ←2.0k ◎49k) 1mo
.flip-tubb8-copy-number (done · →16k ←2.8k ◎37k) 1mo
└→ .evaluate-tubb8-copy-number (done · →19k ←2.8k ◎49k) 1mo
.flip-tubb8b-paralog-characterization (done · →15k ←3.2k ◎37k) 1mo
└→ .evaluate-tubb8b-paralog-characterization (done · →11k ←3.0k ◎56k) 1mo
.flip-or4f-disease-associations (done · →12k ←3.0k ◎54k) 1mo
└→ .evaluate-or4f-disease-associations (done · →7.0k ←2.3k ◎55k) 1mo
.flip-synthesis-integrate-deep (done · →13k ←2.7k ◎37k) 1mo
└→ .evaluate-synthesis-integrate-deep (done · →8.6k ←2.3k ◎56k) 1mo
.flip-tubb8-t2t-assembly (done · →8.9k ←2.1k ◎37k) 1mo
└→ .evaluate-tubb8-t2t-assembly (done · →15k ←2.0k ◎48k) 1mo
.flip-deep-research-gtp (done · →15k ←2.7k ◎55k) 1mo
└→ .evaluate-deep-research-gtp (done · →9.9k ←3.0k ◎56k) 1mo
.flip-multi-copy-or (done · →9.0k ←2.8k ◎37k) 1mo
└→ .evaluate-multi-copy-or (done · →7.1k ←2.2k ◎55k) 1mo
.flip-tubb8-basic-biology (done · →11k ←3.1k ◎54k) 1mo
└→ .evaluate-tubb8-basic-biology (done · →5.9k ←1.8k ◎55k) 1mo
.flip-or4f-functional-characterization (done · →9.0k ←2.4k ◎37k) 1mo
└→ .evaluate-or4f-functional-characterization (done · →7.2k ←2.2k ◎56k) 1mo
.flip-phr-or-biology (done · →19k ←2.6k ◎30k) 1mo
└→ .evaluate-phr-or-biology (done · →7.4k ←2.0k ◎56k) 1mo
.flip-tubb8-mutations-and (done · →14k ←2.8k ◎54k) 1mo
└→ .evaluate-tubb8-mutations-and (done · →9.1k ←2.0k ◎55k) 1mo
.flip-tubulin-subtelomeric-positioning (done · →9.2k ←2.1k ◎37k) 1mo
└→ .evaluate-tubulin-subtelomeric-positioning (done · →11k ←2.2k ◎56k) 1mo
.flip-or4f-copy-number (done · →12k ←3.2k ◎55k) 1mo
└→ .evaluate-or4f-copy-number (done · →6.6k ←1.8k ◎56k) 1mo
.flip-subtelomeric-or-gene (done · →12k ←2.7k ◎54k) 1mo
└→ .evaluate-subtelomeric-or-gene (done · →7.0k ←2.4k ◎55k) 1mo
.flip-deep-research-tubb8 (done · →9.5k ←2.7k ◎37k) 1mo
└→ .evaluate-deep-research-tubb8 (done · →4.8k ←2.0k ◎26k) 1mo
.flip-deep-research-dux4 (done · →14k ←2.6k ◎37k) 1mo
└→ .evaluate-deep-research-dux4 (done · →8.8k ←2.7k ◎56k) 1mo
.flip-deep-research-or4f (done · →20k ←2.9k ◎26k) 1mo
└→ .evaluate-deep-research-or4f (done · →4.4k ←2.3k ◎26k) 1mo
.evaluate-validate-cross-check (abandoned) 1mo
.evaluate-update-revise-phr (abandoned) 1mo
.evaluate-update-revise-phr-2 (abandoned) 1mo
.assign-.verify-clean-commit-stage (done) 1mo
└→ .verify-clean-commit-stage (done · →26k ←3.1k ◎225k §4.3k) 1mo
├→ .evaluate-clean-commit-stage (abandoned) 1mo
└→ .flip-.verify-clean-commit-stage (done · →10k ←2.9k ◎37k) 1mo
└→ .evaluate-.verify-clean-commit-stage (done · →5.0k ←1.4k ◎26k) 1mo
.assign-clean-commit-stage (done) 1mo
└→ clean-commit-stage (done · →0 ←0 §5.7k) 1mo ←─────────────┐
.assign-review-extract-and (done) 1mo │
└→ review-extract-and (done · →31k ←8.8k ◎792k §14k) 1mo │
├→ update-revise-phr (done · →30k ←9.6k ◎276k §2.5k) 1mo ──┼ ←─┐
│ └→ validate-cross-check (done · →0 ←0 §3.6k) 1mo ────────┘ ──┼ ←─┐
└→ update-revise-phr-2 (done · →30k ←7.6k ◎426k §4.1k) 1mo ────┼ ──┤ ←─┐
.assign-update-revise-phr (done) 1mo ────────────────────────────┘ │ │
.assign-update-revise-phr-2 (done · →2.6k ←1.2k ◎37k) 1mo ───────────┼ ──┘
.assign-validate-cross-check (done) 1mo ─────────────────────────────┘
.flip-clean-commit-stage (done · →17k ←2.5k ◎30k) 1mo
.flip-validate-cross-check (done · →13k ←3.6k ◎55k) 1mo
.flip-update-revise-phr-2 (done · →20k ←2.8k ◎30k) 1mo
.flip-update-revise-phr (done · →15k ←2.4k ◎37k) 1mo
.flip-review-extract-and (done · →17k ←4.2k ◎41k) 1mo
└→ .evaluate-review-extract-and (abandoned · →26k ←3.2k ◎38k) 1mo ←─────┐
.assign-.verify-review-extract-and (done) 1mo │
└→ .verify-review-extract-and (abandoned · →25k ←6.6k ◎219k §18k) 1mo ──┘
└→ .flip-.verify-review-extract-and (abandoned · →21k ←2.8k ◎26k) 1mo
.evaluate-.verify-review-extract-and (abandoned · →59k ←15k ◎1.4M) 1mo
.flip-write-feedback-document (done · →16k ←4.0k ◎67k) 1mo
└→ .evaluate-write-feedback-document (done · →6.6k ←2.1k ◎37k) 1mo ←─────┐
.assign-.verify-write-feedback-document (done) 1mo │
└→ .verify-write-feedback-document (done · →17k ←2.0k ◎123k §7.6k) 1mo ──┘
└→ .flip-.verify-write-feedback-document (done · →10k ←4.4k ◎48k) 1mo
└→ .evaluate-.verify-write-feedback-document (done · →4.8k ←3.2k ◎37k) 1mo
.flip-integration-testing-copy (done · →25k ←3.2k ◎48k) 1mo
└→ .evaluate-integration-testing-copy (done · →4.6k ←2.7k ◎37k) 1mo
.assign-integration-testing-copy (done · →9.9k ←1.3k ◎30k) 1mo
└→ integration-testing-copy (done · →46k ←22k ◎1.9M §7.2k) 1mo
.flip-synthesize-parameter-mapping (done · →25k ←4.7k ◎41k) 1mo
└→ .evaluate-synthesize-parameter-mapping (done · →24k ←2.6k ◎71k) 1mo
.assign-implement-copy-number (done) 1mo
└→ implement-copy-number (done · →50k ←19k ◎1.6M §6.6k) 1mo ←─┐
.assign-research-copy-number (done · →3.3k ←1.9k ◎37k) 1mo │
└→ research-copy-number (done · →25k ←4.7k ◎347k §7.7k) 1mo ──┘
├→ check-tool-availability (done · →17k ←5.8k ◎411k §7.0k) 1mo ←─────────────────┐
│ └→ synthesize-findings-and (done · →47k ←8.9k ◎639k §7.4k) 1mo ────────────────┼ ←─┐
├→ investigate-copy-number (done · →67k ←22k ◎2.3M §8.7k) 1mo ───────────────────┼ ──┤ ←─┐
│ ├→ analyze-statistical-framework (done · →34k ←18k ◎568k §5.2k) 1mo ───────────┼ ──┼ ──┼ ←─┐
│ │ └→ synthesize-copy-number (done · →44k ←7.5k ◎600k §5.0k) 1mo ───────────────┼ ──┼ ──┼ ──┼ ←─┐
│ ├→ investigate-weighted-hypergeometric (done · →26k ←7.7k ◎394k §9.2k) 1mo ────┼ ──┼ ──┼ ──┼ ──┤ ←─┐
│ ├→ research-r-phyper (done · →48k ←19k ◎1.2M §11k) 1mo ────────────────────────┼ ──┼ ──┼ ──┼ ──┤ ──┼ ←─┐
│ │ ├→ benchmark-phyper-computational (done · →42k ←21k ◎1.4M §6.5k) 1mo ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ └→ synthesize-r-phyper (done · →0 ←0 §2.7k) 1mo ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ ├→ map-copy-number (done · →28k ←2.4k ◎315k §5.8k) 1mo ──────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ←─┐
│ │ │ ├→ edge-case-analysis (done · →0 ←0 §20k) 1mo ─────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ ├→ integration-testing-with (abandoned · →46k ←19k ◎1.6M §1.6k) 1mo ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ │ └→ synthesize-parameter-mapping (done · →41k ←17k ◎1.6M §8.5k) 1mo ──────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ ├→ mathematical-formulation-of (done · →17k ←3.4k ◎294k §2.7k) 1mo ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ ├→ mathematical-verification-of (done · →59k ←18k ◎2.4M §8.4k) 1mo ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ←─
│ │ │ ├→ performance-benchmarking-parameter (done · →43k ←21k ◎1.5M §8.4k) 1mo ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──
│ │ │ ├→ robust-r-code (done · →23k ←3.3k ◎374k §4.6k) 1mo ──────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ │ └→ statistical-validation-framework (done · →23k ←3.0k ◎312k §4.7k) 1mo ───┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ ├→ research-r-alternatives (done · →36k ←17k ◎613k §6.5k) 1mo ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ ├→ validate-weighted-phyper (done · →71k ←41k ◎2.0M §37k) 1mo ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ └→ verify-weighted-phyper (done · →46k ←19k ◎1.1M §8.2k) 1mo ────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ └→ survey-existing-copy (done · →28k ←6.3k ◎392k §6.7k) 1mo ───────────────────┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ investigate-gat-genomic (done · →30k ←7.9k ◎1.2M §6.5k) 1mo ──────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ investigate-great-rgreat (done · →22k ←5.1k ◎382k §5.7k) 1mo ─────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ investigate-permutation-based (done · →37k ←10.0k ◎722k §7.2k) 1mo ───────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ investigate-weighted-gene (done · →30k ←6.6k ◎425k §5.2k) 1mo ────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
└→ literature-search-copy (done · →22k ←6.0k ◎424k §6.9k) 1mo ───────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-investigate-gat-genomic (done · →2.6k ←1.5k ◎37k) 1mo ─────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-literature-search-copy (done) 1mo ─────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-investigate-permutation-based (done) 1mo ──────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-check-tool-availability (done) 1mo ────────────────────────────────────────┘ │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-investigate-copy-number (done · →2.5k ←1.3k ◎37k) 1mo ─────────────────────────┼ ──┘ │ │ │ │ │ │ │ │ │ │ │
.assign-investigate-great-rgreat (done) 1mo ───────────────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-investigate-weighted-gene (done) 1mo ──────────────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-analyze-statistical-framework (done) 1mo ──────────────────────────────────────┼ ──────┘ │ │ │ │ │ │ │ │ │ │
.assign-investigate-weighted-hypergeometric (done) 1mo ────────────────────────────────┼ ──────────┼ ──┘ │ │ │ │ │ │ │ │
.assign-research-r-phyper (done · →2.4k ←2.3k ◎37k) 1mo ───────────────────────────────┼ ──────────┼ ──────┘ │ │ │ │ │ │ │
.assign-synthesize-findings-and (done) 1mo ────────────────────────────────────────────┘ │ │ │ │ │ │ │ │
.assign-survey-existing-copy (done) 1mo ───────────────────────────────────────────────────────────┼ ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-verify-weighted-phyper (done) 1mo ─────────────────────────────────────────────────────────┼ ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-validate-weighted-phyper (done) 1mo ───────────────────────────────────────────────────────┼ ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-map-copy-number (done · →9.5k ←1.9k ◎30k) 1mo ─────────────────────────────────────────────┼ ──────────┼ ──┼ ──┤ │ │ │ │
.assign-synthesize-copy-number (done) 1mo ─────────────────────────────────────────────────────────┘ │ │ │ │ │ │ │
.assign-research-r-alternatives (done) 1mo ────────────────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-benchmark-phyper-computational (done) 1mo ─────────────────────────────────────────────────────────────┘ │ │ │ │ │ │
.assign-statistical-validation-framework (done · →2.4k ←1.4k ◎37k) 1mo ────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-robust-r-code (done) 1mo ──────────────────────────────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-mathematical-formulation-of (done) 1mo ────────────────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┘
.assign-edge-case-analysis (done · →9.5k ←1.4k ◎30k) 1mo ──────────────────────────────────────────────────────────┼ ──┼ ──┘ │ │
.assign-fix-implement-copy (done · →2.5k ←1.5k ◎37k) 1mo │ │ │ │
└→ fix-implement-copy (done · →62k ←24k ◎2.1M §1.5k) 1mo ──────────────────────────────────────────────────────────┼ ──┘ │ │
.assign-synthesize-r-phyper (done) 1mo ────────────────────────────────────────────────────────────────────────────┘ │ │
.assign-mathematical-verification-of (done · →2.5k ←2.2k ◎37k) 1mo ────────────────────────────────────────────────────────────┼ ──┼ ──────
.assign-performance-benchmarking-parameter (done · →2.5k ←1.1k ◎37k) 1mo ──────────────────────────────────────────────────────┼ ──┼ ──────
.assign-integration-testing-with (done · →9.4k ←1.6k ◎30k) 1mo ────────────────────────────────────────────────────────────────┘ │
.assign-synthesize-parameter-mapping (done · →2.5k ←1.2k ◎37k) 1mo ────────────────────────────────────────────────────────────────┘
.evaluate-fix-implement-copy (abandoned) 1mo
.evaluate-statistical-validation-framework-3 (abandoned) 1mo
.evaluate-robust-r-code (abandoned) 1mo
.evaluate-synthesize-r-phyper (abandoned) 1mo
.assign-.verify-edge-case-analysis (done · →10k ←1.7k ◎30k) 1mo
└→ .verify-edge-case-analysis (done · →41k ←16k ◎931k §12k) 1mo
├→ .evaluate-edge-case-analysis (abandoned) 1mo
└→ .flip-.verify-edge-case-analysis (done · →15k ←7.3k ◎48k) 1mo
└→ .evaluate-.verify-edge-case-analysis (done · →4.6k ←3.0k ◎37k) 1mo
.evaluate-statistical-validation-framework (abandoned) 1mo
.evaluate-mathematical-formulation-of (abandoned) 1mo
.flip-integration-testing-with (abandoned) 1mo
└→ .evaluate-integration-testing-with (abandoned) 1mo
.flip-statistical-validation-framework-3 (done · →12k ←2.3k ◎48k) 1mo
.assign-fix-map-copy-2 (done · →9.6k ←2.4k ◎30k) 1mo
└→ fix-map-copy-2 (done · →56k ←17k ◎2.2M §13k) 1mo
├→ edge-case-analysis-2 (done · →17k ←1.5k ◎105k §11k) 1mo ←──────────────────────────┐
│ └→ synthesize-r-phyper-2 (done · →18k ←4.1k ◎392k §8.2k) 1mo ───────────────────────┼ ←─┐
│ ├→ final-recommendations-synthesis (done · →41k ←5.6k ◎861k §8.1k) 1mo ───────────┼ ──┼ ←─┐
│ │ ├→ decision-framework-recommendations (done · →28k ←7.1k ◎460k §10k) 1mo ───────┼ ──┼ ──┼ ←─┐
│ │ │ └→ integrate-final-recommendations (done · →44k ←12k ◎513k §7.9k) 1mo ────────┼ ──┼ ──┼ ──┼ ←─┐
│ │ ├→ implementation-roadmap-recommendations (done · →28k ←9.0k ◎473k §5.9k) 1mo ──┼ ──┼ ──┼ ──┼ ──┤ ←─┐
│ │ ├→ integration-and-final (done · →35k ←9.4k ◎765k §7.8k) 1mo ───────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ ├→ methodology-synthesis-recommendations (done · →37k ←6.8k ◎462k §7.7k) 1mo ───┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ←─┐
│ │ └→ use-case-scenarios (done · →34k ←7.4k ◎478k §8.8k) 1mo ──────────────────────┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ←─┐
│ ├→ implementation-best-practices (done · →41k ←9.7k ◎452k §7.3k) 1mo ─────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ←─┐
│ ├→ methodology-synthesis-documentation (done · →37k ←7.9k ◎583k §6.4k) 1mo ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ←─┐
│ └→ performance-and-accuracy (done · →41k ←7.1k ◎799k §6.5k) 1mo ──────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ←─┐
├→ robust-r-code-2 (done · →56k ←31k ◎2.1M §10k) 1mo ─────────────────────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
└→ statistical-validation-framework-2 (done · →17k ←3.1k ◎252k §15k) 1mo ─────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←
├→ null-distribution-validation (done · →48k ←16k ◎2.1M §9.9k) 1mo ─────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ statistical-validation-framework-3 (done · →66k ←25k ◎2.6M §3.3k) 1mo ─────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
├→ parameter-constraint-validation (done · →74k ←34k ◎4.0M §8.1k) 1mo ──────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
└→ type-i-error (done · →44k ←16k ◎1.5M §9.1k) 1mo ─────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-statistical-validation-framework-2 (done) 1mo ──────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-robust-r-code-2 (done · →2.5k ←1.1k ◎37k) 1mo ──────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘
.assign-edge-case-analysis-2 (done · →2.5k ←1.7k ◎37k) 1mo ─────────────────────────────┘ │ │ │ │ │ │ │ │ │ │ │
.assign-null-distribution-validation (done) 1mo ────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─────
.assign-type-i-error (done · →2.5k ←1.1k ◎37k) 1mo ─────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─────
.assign-parameter-constraint-validation (done · →2.5k ←1.2k ◎37k) 1mo ──────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─────
.assign-synthesize-r-phyper-2 (done · →2.6k ←1.6k ◎37k) 1mo ────────────────────────────────┘ │ │ │ │ │ │ │ │ │ │
.assign-performance-and-accuracy (done · →29k ←1.6k ◎7.8k) 1mo ─────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘
.assign-implementation-best-practices (done · →2.5k ←1.1k ◎37k) 1mo ────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘ │
.assign-methodology-synthesis-documentation (done) 1mo ─────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──────┘
.assign-final-recommendations-synthesis (done · →2.5k ←2.8k ◎37k) 1mo ──────────────────────────┘ │ │ │ │ │ │
.assign-decision-framework-recommendations (done · →2.6k ←2.1k ◎37k) 1mo ───────────────────────────┘ │ │ │ │ │
.assign-use-case-scenarios (done · →9.5k ←2.0k ◎30k) 1mo ───────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┘
.assign-methodology-synthesis-recommendations (done) 1mo ───────────────────────────────────────────────┼ ──┼ ──┼ ──┘
.assign-implementation-roadmap-recommendations (done) 1mo ──────────────────────────────────────────────┼ ──┘ │
.assign-integration-and-final (done · →2.5k ←1.3k ◎37k) 1mo ────────────────────────────────────────────┼ ──────┘
.assign-statistical-validation-framework-3 (done · →2.5k ←959 ◎37k) 1mo ────────────────────────────────┼ ─────────────────────────────────
.assign-integrate-final-recommendations (done · →2.6k ←2.4k ◎37k) 1mo ──────────────────────────────────┘
.flip-mathematical-verification-of (done · →19k ←3.2k ◎48k) 1mo
└→ .evaluate-mathematical-verification-of (done · →18k ←2.9k ◎78k) 1mo
.flip-statistical-validation-framework (done · →26k ←3.3k ◎41k) 1mo
.flip-performance-benchmarking-parameter (done · →17k ←3.6k ◎48k) 1mo
└→ .evaluate-performance-benchmarking-parameter (done · →13k ←3.7k ◎78k) 1mo
.flip-synthesize-r-phyper (done · →25k ←2.7k ◎41k) 1mo
.flip-robust-r-code (done · →19k ←4.5k ◎48k) 1mo
.flip-mathematical-formulation-of (done · →21k ←2.7k ◎41k) 1mo
.flip-edge-case-analysis (done · →16k ←2.6k ◎41k) 1mo
.flip-fix-mark-fix (done · →9.2k ←3.9k ◎48k) 1mo
└→ .evaluate-fix-mark-fix (done · →3.9k ←2.2k ◎37k) 1mo
.assign-fix-mark-fix (done · →2.4k ←2.1k ◎37k) 1mo
└→ fix-mark-fix (done · →27k ←4.9k ◎619k §8.3k) 1mo
.flip-fix-implement-copy (abandoned) 1mo
.flip-map-copy-number (done · →16k ←2.0k ◎41k) 1mo
└→ .evaluate-map-copy-number (done · →11k ←1.8k ◎30k) 1mo ←─┐
.assign-.verify-map-copy-number (done) 1mo │
└→ .verify-map-copy-number (abandoned · →0 ←0 §8.4k) 1mo ───┘
└→ .flip-.verify-map-copy-number (open) 1mo
.evaluate-.verify-map-copy-number (abandoned · →39k ←8.2k ◎1.4M) 1mo
.flip-integrate-final-recommendations (done · →16k ←3.9k ◎41k) 1mo
└→ .evaluate-integrate-final-recommendations (done · →3.9k ←1.6k ◎37k) 1mo
.flip-implementation-roadmap-recommendations (done · →24k ←3.4k ◎59k) 1mo
└→ .evaluate-implementation-roadmap-recommendations (done · →3.8k ←2.4k ◎37k) 1mo
.flip-methodology-synthesis-recommendations (done · →15k ←5.1k ◎66k) 1mo
└→ .evaluate-methodology-synthesis-recommendations (done · →9.5k ←2.6k ◎77k) 1mo
.flip-integration-and-final (done · →9.3k ←3.5k ◎48k) 1mo
└→ .evaluate-integration-and-final (done · →17k ←2.9k ◎71k) 1mo
.flip-use-case-scenarios (done · →21k ←3.9k ◎59k) 1mo
└→ .evaluate-use-case-scenarios (done · →16k ←2.8k ◎71k) 1mo
.flip-decision-framework-recommendations (done · →21k ←5.8k ◎41k) 1mo
└→ .evaluate-decision-framework-recommendations (done · →16k ←2.5k ◎71k) 1mo
.flip-null-distribution-validation (done · →18k ←5.7k ◎48k) 1mo
└→ .evaluate-null-distribution-validation (done · →4.2k ←4.2k ◎37k) 1mo
.flip-type-i-error (done · →13k ←3.8k ◎107k) 1mo
└→ .evaluate-type-i-error (done · →4.4k ←4.2k ◎37k) 1mo
.flip-performance-and-accuracy (done · →20k ←2.4k ◎41k) 1mo
└→ .evaluate-performance-and-accuracy (done · →8.6k ←2.4k ◎78k) 1mo
.flip-parameter-constraint-validation (done · →19k ←3.4k ◎48k) 1mo
└→ .evaluate-parameter-constraint-validation (done · →4.1k ←3.6k ◎37k) 1mo
.flip-final-recommendations-synthesis (done · →9.3k ←3.2k ◎48k) 1mo
└→ .evaluate-final-recommendations-synthesis (done · →4.1k ←2.0k ◎37k) 1mo
.flip-methodology-synthesis-documentation (done · →22k ←3.9k ◎59k) 1mo
└→ .evaluate-methodology-synthesis-documentation (done · →19k ←2.4k ◎71k) 1mo
.flip-implementation-best-practices (done · →25k ←3.6k ◎59k) 1mo
└→ .evaluate-implementation-best-practices (done · →20k ←2.6k ◎71k) 1mo
.assign-fix-verify-fix (done · →2.4k ←954 ◎37k) 1mo
└→ fix-verify-fix (abandoned · §5.1k) 1mo
.flip-synthesize-r-phyper-2 (done · →9.2k ←3.9k ◎48k) 1mo
└→ .evaluate-synthesize-r-phyper-2 (done · →3.9k ←2.6k ◎37k) 1mo
.flip-statistical-validation-framework-2 (done · →9.5k ←2.9k ◎48k) 1mo
└→ .evaluate-statistical-validation-framework-2 (done · →12k ←5.5k ◎30k) 1mo ←──────┐
.assign-.verify-statistical-validation-framework-2 (done · →10k ←1.7k ◎30k) 1mo │
└→ .verify-statistical-validation-framework-2 (done · →48k ←7.1k ◎702k §9.7k) 1mo ──┘
└→ .flip-.verify-statistical-validation-framework-2 (done · →17k ←5.4k ◎41k) 1mo
└→ .evaluate-.verify-statistical-validation-framework-2 (done · →4.9k ←2.6k ◎37k) 1mo
.flip-fix-map-copy-2 (done · →17k ←2.5k ◎41k) 1mo
└→ .evaluate-fix-map-copy-2 (done · →5.6k ←2.2k ◎37k) 1mo ←─────┐
.assign-.verify-fix-map-copy-2 (done) 1mo │
└→ .verify-fix-map-copy-2 (done · →28k ←5.5k ◎641k §8.3k) 1mo ──┘
└→ .flip-.verify-fix-map-copy-2 (done · →17k ←5.9k ◎41k) 1mo
└→ .evaluate-.verify-fix-map-copy-2 (done · →4.9k ←2.3k ◎37k) 1mo
.flip-robust-r-code-2 (done · →20k ←2.8k ◎48k) 1mo
└→ .evaluate-robust-r-code-2 (done · →35k ←6.0k ◎1.3M) 1mo
.flip-validate-weighted-phyper (done · →9.3k ←2.8k ◎48k) 1mo
└→ .evaluate-validate-weighted-phyper (done · →4.5k ←3.5k ◎37k) 1mo ←───┐
.assign-.verify-validate-weighted-phyper (done) 1mo │
└→ .verify-validate-weighted-phyper (done · →73k ←29k ◎1.4M §17k) 1mo ──┘
└→ .flip-.verify-validate-weighted-phyper (done · →36k ←11k ◎491k) 1mo
└→ .evaluate-.verify-validate-weighted-phyper (done · →23k ←5.5k ◎480k) 1mo
.flip-edge-case-analysis-2 (done · →21k ←4.2k ◎119k) 1mo
└→ .evaluate-edge-case-analysis-2 (done · →22k ←2.4k ◎78k) 1mo
.flip-fix-verify-fix (done · →9.1k ←2.3k ◎48k) 1mo
└→ .evaluate-fix-verify-fix (done · →3.8k ←1.7k ◎37k) 1mo
.flip-map-copy-number-2 (done · →11k ←3.7k ◎66k) 1mo
└→ .evaluate-map-copy-number-2 (done · →4.1k ←3.0k ◎37k) 1mo
.assign-fix-map-copy (done · →9.5k ←1.6k ◎30k) 1mo
└→ fix-map-copy (done · →36k ←8.0k ◎1.1M §9.7k) 1mo ✉1
└→ map-copy-number-2 (done · →16k ←3.5k ◎288k §7.8k) 1mo ←─┐
.assign-map-copy-number-2 (done · →2.4k ←1.0k ◎37k) 1mo ─────┘
.flip-fix-resolve-fix (done · →9.4k ←3.7k ◎48k) 1mo
└→ .evaluate-fix-resolve-fix (done · →3.9k ←1.8k ◎37k) 1mo
.assign-fix-resolve-fix (done · →2.5k ←1.5k ◎37k) 1mo
└→ fix-resolve-fix (done · →28k ←5.7k ◎885k §6.9k) 1mo
.flip-fix-map-copy (done · →11k ←2.5k ◎48k) 1mo
└→ .evaluate-fix-map-copy (done · →4.2k ←5.6k ◎37k) 1mo
.flip-benchmark-phyper-computational (done · →26k ←3.9k ◎41k) 1mo
└→ .evaluate-benchmark-phyper-computational (done · →29k ←2.6k ◎71k) 1mo
.flip-verify-weighted-phyper (done · →27k ←5.5k ◎41k) 1mo
└→ .evaluate-verify-weighted-phyper (done · →11k ←2.7k ◎30k) 1mo
.flip-research-r-alternatives (done · →26k ←4.0k ◎41k) 1mo
└→ .evaluate-research-r-alternatives (done · →4.0k ←2.5k ◎37k) 1mo
.flip-synthesize-copy-number (done · →9.1k ←2.4k ◎48k) 1mo
└→ .evaluate-synthesize-copy-number (done · →16k ←2.6k ◎70k) 1mo
.flip-research-r-phyper (done · →17k ←3.6k ◎48k) 1mo
└→ .evaluate-research-r-phyper (done · →14k ←4.6k ◎78k) 1mo
.flip-analyze-statistical-framework (done · →9.2k ←2.3k ◎48k) 1mo
└→ .evaluate-analyze-statistical-framework (done · →22k ←2.8k ◎78k) 1mo
.flip-synthesize-findings-and (done · →11k ←4.6k ◎66k) 1mo
└→ .evaluate-synthesize-findings-and (done · →17k ←2.8k ◎71k) 1mo
.flip-investigate-weighted-hypergeometric (done · →23k ←6.5k ◎59k) 1mo
└→ .evaluate-investigate-weighted-hypergeometric (done · →3.6k ←2.7k ◎37k) 1mo
.flip-survey-existing-copy (done · →16k ←3.7k ◎41k) 1mo
└→ .evaluate-survey-existing-copy (done · →8.8k ←2.9k ◎78k) 1mo
.flip-investigate-copy-number (done · →9.4k ←3.8k ◎48k) 1mo
└→ .evaluate-investigate-copy-number (done · →20k ←3.6k ◎78k) 1mo
.flip-implement-copy-number (done · →9.6k ←3.4k ◎48k) 1mo
└→ .evaluate-implement-copy-number (done · →4.2k ←3.1k ◎37k) 1mo
.flip-investigate-gat-genomic (done · →18k ←3.0k ◎59k) 1mo
└→ .evaluate-investigate-gat-genomic (done · →13k ←2.0k ◎71k) 1mo
.flip-investigate-weighted-gene (done · →8.9k ←3.1k ◎48k) 1mo
└→ .evaluate-investigate-weighted-gene (done · →12k ←2.1k ◎74k) 1mo
.flip-check-tool-availability (done · →12k ←4.3k ◎65k) 1mo
└→ .evaluate-check-tool-availability (done · →13k ←2.6k ◎70k) 1mo
.flip-investigate-permutation-based (done · →17k ←4.7k ◎65k) 1mo
└→ .evaluate-investigate-permutation-based (done · →18k ←2.5k ◎71k) 1mo
.flip-literature-search-copy (done · →13k ←4.1k ◎65k) 1mo
└→ .evaluate-literature-search-copy (done · →7.1k ←2.8k ◎77k) 1mo
.flip-investigate-great-rgreat (done · →19k ←3.0k ◎58k) 1mo
└→ .evaluate-investigate-great-rgreat (done · →27k ←2.6k ◎39k) 1mo
.flip-research-copy-number (done · →9.7k ←3.0k ◎48k) 1mo
└→ .evaluate-research-copy-number (done · →12k ←2.8k ◎30k) 1mo
.flip-map-every-protein (done · →10k ←5.4k ◎48k) 1mo
└→ .evaluate-map-every-protein (done · →4.9k ←3.0k ◎37k) 1mo
.assign-map-every-protein (done · →32k ←1.0k ◎7.8k) 1mo
└→ map-every-protein (done · →51k ←12k ◎1.1M §9.5k) 1mo
.flip-write-paper-ready (done · →23k ←5.6k ◎58k) 1mo
└→ .evaluate-write-paper-ready (done · →11k ←3.8k ◎78k) 1mo
.assign-write-paper-ready (done · →3.9k ←2.5k ◎36k) 1mo
└→ write-paper-ready (done · →39k ←8.1k ◎477k §12k) 1mo
.flip-go-enrichment-on (done · →22k ←3.7k ◎47k) 1mo
└→ .evaluate-go-enrichment-on (done · →4.7k ←3.0k ◎36k) 1mo
.assign-go-enrichment-on (done · →32k ←1.1k ◎7.6k) 1mo
└→ go-enrichment-on (done · →58k ←13k ◎1.6M §7.9k) 1mo
.flip-detailed-mapping-enriched (done · →9.6k ←7.0k ◎47k) 1mo
└→ .evaluate-detailed-mapping-enriched (done · →23k ←3.4k ◎77k) 1mo
.assign-detailed-mapping-enriched (done · →3.1k ←1.4k ◎36k) 1mo
└→ detailed-mapping-enriched (done · →82k ←20k ◎2.7M §12k) 1mo
.flip-synthesis-phr-gene (done · →18k ←4.4k ◎58k) 1mo
└→ .evaluate-synthesis-phr-gene (done · →6.2k ←2.8k ◎76k) 1mo
.assign-research-snrnp-assembly (done) 1mo
└→ research-snrnp-assembly (done · →39k ←11k ◎1.0M §7.6k) 1mo
└→ synthesis-phr-gene (done · →22k ←5.8k ◎358k §7.3k) 1mo ←─────────┐
.assign-synthesis-phr-gene (done) 1mo ────────────────────────────────┤
.assign-research-olfactory-receptor (done · →4.0k ←2.1k ◎36k) 1mo │
└→ research-olfactory-receptor (done · →32k ←9.3k ◎910k §8.8k) 1mo ───┤
.assign-research-post-transcriptional (done) 1mo │
└→ research-post-transcriptional (done · →51k ←13k ◎1.7M §7.3k) 1mo ──┤
.assign-research-neuron-projection (done) 1mo │
└→ research-neuron-projection (done · →23k ←4.9k ◎566k §5.8k) 1mo ────┘
.flip-research-post-transcriptional (done · →13k ←4.4k ◎84k) 1mo
└→ .evaluate-research-post-transcriptional (done · →4.4k ←2.9k ◎36k) 1mo
.flip-research-olfactory-receptor (done · →12k ←3.3k ◎64k) 1mo
└→ .evaluate-research-olfactory-receptor (done · →7.2k ←3.4k ◎77k) 1mo
.flip-research-snrnp-assembly (done · →9.0k ←4.8k ◎47k) 1mo
└→ .evaluate-research-snrnp-assembly (done · →11k ←2.7k ◎30k) 1mo
.flip-research-neuron-projection (done · →16k ←3.9k ◎58k) 1mo
└→ .evaluate-research-neuron-projection (done · →4.8k ←1.8k ◎76k) 1mo
.flip-rerun-enrichment-excluding (done · →16k ←2.7k ◎41k) 1mo
└→ .evaluate-rerun-enrichment-excluding (done · →4.9k ←3.0k ◎36k) 1mo
.assign-rerun-enrichment-excluding (done · →4.3k ←1.2k ◎36k) 1mo
└→ rerun-enrichment-excluding (done · →42k ←15k ◎1.5M §7.0k) 1mo
.flip-report-show-enrichment (done · →8.4k ←3.0k ◎47k) 1mo
└→ .evaluate-report-show-enrichment (done · →4.0k ←2.7k ◎36k) 1mo
.assign-report-show-enrichment (done · →3.8k ←1.2k ◎36k) 1mo
└→ report-show-enrichment (done · →19k ←4.5k ◎337k §6.9k) 1mo
.flip-step-5-reconcile-with (done · →15k ←4.0k ◎41k) 1mo
└→ .evaluate-step-5-reconcile-with (done · →7.0k ←2.8k ◎76k) 1mo
.assign-research-inventory-files (done · →10k ←1.3k ◎30k) 1mo
└→ research-inventory-files (done · →28k ←6.6k ◎729k §7.3k) 1mo
└→ step-1-extract-chm13 (done · →17k ←3.6k ◎439k §7.1k) 1mo ←──────────┐
└→ step-2-intersect-genes (done · →25k ←6.5k ◎1.0M §5.6k) 1mo ───────┼ ←─┐
└→ step-3-run-go (done · →34k ←14k ◎1.8M §5.7k) 1mo ───────────────┼ ──┼ ←─┐
└→ step-4-compare-phr (done · →33k ←12k ◎1.2M §5.6k) 1mo ────────┼ ──┼ ──┼ ←─┐
└→ step-5-reconcile-with (done · →27k ←5.6k ◎463k §6.8k) 1mo ──┼ ──┼ ──┼ ──┼ ←─┐
.assign-step-1-extract-chm13 (done) 1mo ─────────────────────────────────┘ │ │ │ │
.assign-step-2-intersect-genes (done) 1mo ───────────────────────────────────┘ │ │ │
.assign-step-3-run-go (done) 1mo ────────────────────────────────────────────────┘ │ │
.assign-step-4-compare-phr (done) 1mo ───────────────────────────────────────────────┘ │
.assign-step-5-reconcile-with (done) 1mo ────────────────────────────────────────────────┘
.flip-step-4-compare-phr (done · →8.6k ←3.4k ◎47k) 1mo
└→ .evaluate-step-4-compare-phr (done · →4.2k ←2.1k ◎36k) 1mo
.flip-step-3-run-go (done · →14k ←3.2k ◎47k) 1mo
└→ .evaluate-step-3-run-go (done · →11k ←2.4k ◎30k) 1mo
.flip-step-2-intersect-genes (done · →24k ←3.1k ◎47k) 1mo
└→ .evaluate-step-2-intersect-genes (done · →10k ←2.5k ◎30k) 1mo
.flip-step-1-extract-chm13 (done · →8.3k ←1.9k ◎47k) 1mo
└→ .evaluate-step-1-extract-chm13 (done · →11k ←2.3k ◎30k) 1mo ←──────┐
.assign-.verify-step-1-extract-chm13 (done) 1mo │
└→ .verify-step-1-extract-chm13 (done · →32k ←2.8k ◎244k §5.7k) 1mo ──┘
└→ .flip-.verify-step-1-extract-chm13 (done · →9.0k ←3.9k ◎47k) 1mo
└→ .evaluate-.verify-step-1-extract-chm13 (done · →4.6k ←1.7k ◎36k) 1mo
.flip-research-inventory-files (done · →17k ←3.1k ◎58k) 1mo
└→ .evaluate-research-inventory-files (done · →10k ←2.8k ◎50k) 1mo
.flip-find-the-last (done · →10k ←1.6k ◎47k) 1mo
└→ .evaluate-find-the-last (done · →6.1k ←1.5k ◎36k) 1mo
.assign-find-the-last (done · →3.7k ←1.8k ◎36k) 1mo
└→ find-the-last (done · →24k ←4.1k ◎178k §4.9k) 1mo
.flip-.archive-0 (done · →14k ←1.6k ◎41k) 1mo
└→ .evaluate-.archive-0 (done · →3.2k ←2.5k ◎36k) 1mo