.chat-7 (in-progress · ⌁50) 7d [turn 0]
.chat-6 (in-progress · ⌁50) 9d [turn 0]
.chat-5 (in-progress · ⌁50) 1mo [turn 0]
.chat-4 (in-progress · ⌁50) 1mo [turn 0]
fig5-raw-manymany-impg-similarity-2kb-sharded (done · →138k ←33k ◎5.0M §781k · ⌁50) 6h
├→ fig5-raw-manymany-impg-similarity-2kb-single-node-race (done · →95k ←20k ◎1.9M §17k · ⌁50) 2h
├→ finalize-fig5-raw (failed · →174k ←26k ◎3.7M §17k) 6h ✉2
└→ finalize-fig5-raw-after-arrays (open · ⌁50) ⏳3h 2h
fig5-raw-manymany-impg-similarity-fullbed (failed · §17k · ⌁50) 2d
fig5-2kb-direct-similarity-pilot (done · →154k ←18k ◎1.7M §230k · ⌁50) 2d
├→ fig5-whole-genome-existing-paf-impg-like-scan (done · →150k ←50k ◎9.3M §199k · ⌁50) 2d ✉2
└→ harvest-fig5-wfmash (done · →127k ←9.3k ◎1.9M §417k) 2d
fig5-wg-wfmash-filtered-graph-untangle-pilot (done · →258k ←28k ◎5.0M · ⌁50) 2d
fig5-pafchop-query-grid-mode (done · →202k ←23k ◎3.7M §752k · ⌁100) 4d
├→ fig5-f16-query-grid-chop-filter-rerun (done · →1.5M ←68k ◎49M §1.8M · ⌁100) 3d
│ ├→ fig5-query-grid-overlap-audit (done · →247k ←25k ◎5.1M §183k · ⌁50) 3d ──────────┐
│ ├→ fig5-query-grid-panels-regenerate (done · →111k ←7.0k ◎643k · ⌁50) 3d │
│ └→ fig5-query-grid-panels-generate-real (done · →138k ←17k ◎1.7M §912k · ⌁100) 3d ←─┘ ──┐ ──┐
│ └→ fig5-untangle-query-grid-style-panels (done · →412k ←22k ◎4.7M §1.3M · ⌁50) 3d │ │
│ └→ fig5-untangle-whole-genome-overview (done · →315k ←24k ◎1.9M §777k · ⌁50) 3d ────┼ ──┤ ──┐
├→ fig5-f32-query-grid-chop-filter-rerun (done · →669k ←54k ◎23M §17k · ⌁100) 2d ─────────┼ ──┼ ──┤ ←─┐
│ └→ fig5-f32-query-grid-overlap-audit (done · →192k ←20k ◎5.3M §17k · ⌁50) 2d ───────────┤ ──┤ │ │
├→ fig5-wfmash-query-grid-chop-filter (done · →161k ←23k ◎3.2M §421k · ⌁50) 3d ───────────┼ ──┤ ──┤ │
├→ fig5-f16-f32-query-grid-comparison-panels (done · →68k ←7.2k ◎481k §1.6M · ⌁50) 2d ←───┘ │ │ │
├→ fig5-length-scaled-whole-genome-tracks (done · →141k ←20k ◎1.7M · ⌁50) 2d ✉2 ──────────────┼ ←─┘ │
│ └→ fig5-length-scaled-exact-paf-tracks (done · →175k ←22k ◎5.6M §557k · ⌁50) 2d ✉2 │ │
└→ fig5-whole-genome-alignment-overview (done · →277k ←32k ◎6.7M §17k · ⌁50) 2d ←─────────────┘ │
fig5-sweepga-fastga-frequency32-raw (done · →1.1M ←80k ◎54M §1.1M · ⌁100) 2d ─────────────────────────┘
fig5-raw-fasta-f16-scaffold-jump-filter-sensitivity (done · →255k ←32k ◎5.0M §1.7M · ⌁50) 4d
fig5-raw-fasta-f16-multiway-panels (done · →232k ←21k ◎3.8M §603k · ⌁50) 4d
fig5-raw-fasta-f16-no-chop-merge-panels (done · →354k ←30k ◎5.4M §679k) 4d
fig5-raw-fasta-f16-chop-filter-sensitivity-panels (done · →318k ←42k ◎55M §709k) 4d
fix-fig5-synteny (done · →171k ←24k ◎2.5M §725k) 7d ✉2
└→ fig5-direct-sweepga-1to1-schematic (done · §17k · ⌁50) 7d ✉3 ←─┐ ──┐
direct-sweepga-parental (done · →261k ←31k ◎4.4M §455k) 7d ✉2 ─────┘ │
├→ organize-direct-sweepga (done · →111k ←12k ◎1.6M §558k) 7d │
└→ fig5-joint-parent-sweepga (done · →230k ←23k ◎4.2M §17k · ⌁50) 7d ←─┘
└→ fig5-whole-genome-joint-parent-sweepga (done · →892k ←96k ◎64M §983k · ⌁50) 6d ✉2 ←──────────────────┐
└→ fig5-whole-genome-sweepga-evidence-review (done · →269k ←19k ◎3.1M §187k · ⌁50) 6d │
└→ fig5-whole-genome-sweepga-qa-closeout (done · →101k ←9.2k ◎1.3M §228k) 6d │
├→ fig5-whole-genome-sweepga-updated-bin (done · →558k ←53k ◎13M §191k · ⌁50) 6d ✉10 ─────────────┼ ──┐ ──┐ ──┐
├→ fig5-whole-genome-wfmash-p95 (done · →481k ←59k ◎15M §861k · ⌁50) 6d ✉2 │ │ │ │
│ └→ fig5-whole-genome-wfmash-p95-evidence-review (done · →114k ←13k ◎1.5M §158k · ⌁50) 6d ✉1 │ │ │ │
│ └→ fig5-whole-genome-wfmash-p95-updated-bin (done · →142k ←29k ◎7.9M §249k · ⌁50) 6d ─────────┼ ──┼ ──┼ ──┤
│ ├→ fig5-sweepga-fastga-frequency100 (done · →119k ←31k ◎5.0M §705k · ⌁50) 6d ───────────────┼ ──┼ ──┤ ──┤ ──┐
│ └→ fig5-whole-genome-minimap2-asm5-allchains (done · →285k ←49k ◎19M §601k · ⌁50) 5d ───────┼ ──┤ ──┼ ──┤ ←─┘
├→ fig5-minimap2-longrun-chop-sweep (done · →427k ←54k ◎23M §949k · ⌁50) 5d ──────────────────────┼ ←─┘ ──┼ ──┤
│ └→ fig5-minimap2-harvest-active-slurm (done · →422k ←38k ◎19M §755k · ⌁50) 4d │ │ │
├→ fig5-sweepga-fastga-frequency16 (done · →343k ←51k ◎18M §1.4M · ⌁50) 5d ✉6 ────────────────────┼ ←─────┘ ──┤
│ ├→ audit-sweepga-paf-filter-identity-scoring (done · →82k ←6.1k ◎652k §332k · ⌁100) 5d ─────────┼ ──────────┼ ──┐ ──┐
│ ├→ ‖ fig5-sweepga-f16-chop-1to1-sensitivity (open · §18k · ⌁50) 5d │ │ │ │
│ ├→ ‖ fig5-sweepga-f16-chop-1to1-slurm-sensitivity (open · §18k · ⌁50) 5d ✓3 │ │ │ │
│ ├→ validate-pafchop-rs-paf-semantics (done · →110k ←31k ◎2.2M §748k · ⌁100) 5d ─────────────────┼ ──────────┼ ──┤ ──┤
│ │ └→ redo-sweepga-paf-filter-identity-scoring-audit (done · →181k ←19k ◎4.1M §851k · ⌁100) 4d │ │ │ │
│ ├→ fig5-raw-fasta-sweepga-f16-chopped-panels (done · →352k ←43k ◎7.9M §702k · ⌁50) 4d ──────────┼ ──────────┼ ←─┘ │
│ └→ ‖ fig5-sweepga-f16-validated-chop-sensitivity (open · §18k · ⌁50) 5d ✉1 ────────────────────┼ ──────────┼ ←─────┘
└→ fig5-updated-binary-direct-alignment-review (done · →92k ←15k ◎2.2M §159k · ⌁50) 5d ───────────┼ ←─────────┘
research-par1-positive (done · →191k ←16k ◎1.5M §726k) 7d ────────────────────────────────────────────────┤
prereq-restore-readable (done · →258k ←20k ◎6.9M §353k) 7d ───────────────────────────────────────────────┘
fig5-sweepga-f16-validated-chop-submit-slurm-shell (done · §54k · ⌁50) 4d
‖ fig5-sweepga-f16-validated-chop-rerun-after-real-audit (open · ⌁50) 4d
clean-unbanded-fig5 (done · →262k ←17k ◎1.7M §416k) 7d
remove-fake-banding (done · →185k ←15k ◎1.9M §554k) 7d
fig5-synteny-event-manifest (done · →116k ←17k ◎2.1M §269k · ⌁50) 7d
├→ fig5-synteny-schematic-prototype (done · →87k ←18k ◎1.3M §526k · ⌁50) 7d
│ └→ fig5-synteny-schematic-review-pack (done · →120k ←8.3k ◎1.2M §116k) 7d ✉2
└→ fix-stale-pan028-chr3q-compact-panel-label (done · →164k ←11k ◎2.1M §479k · ⌁50) 7d
fig5-par1-phr-candidate-panels (done · →165k ←23k ◎4.1M §431k · ⌁50) 7d
└→ fix-fig5-candidate-panel-coordinates (done · →99k ←16k ◎2.1M §558k · ⌁50) 7d ✉2
fix-fig5-sweepga-redraw-coordinate-style (done · →202k ←19k ◎2.6M §196k · ⌁50) 8d
fig5-sweepga-1to1-redraw (done · →135k ←19k ◎2.8M §508k · ⌁50) 8d
manuscript-final-housekeeping (done · →134k ←15k ◎3.2M §265k · ⌁50) 8d
‖ pedigree-patch-tract (done · §1.8M) 9d ✓8
└→ pedigree-untangle-multimap-tracts (done · →83k ←22k ◎2.0M §709k · ⌁50) 8d
└→ pedigree-untangle-bedpe-paf-merge (done · →134k ←23k ◎3.8M §861k · ⌁50) 8d ✉13
└→ fig5-maternal-native-untangle-diff (done · →123k ←23k ◎3.0M §749k · ⌁50) 8d
manuscript-nature-summary (done · →151k ←10k ◎2.2M §537k) 9d
manuscript-fig4-flank-pedigree-presentation (done · →200k ←15k ◎5.2M §417k) 9d
‖ manuscript-bouquet-dehedge (done) 9d
manuscript-revision-00-read (done · →130k ←11k ◎1.1M §387k) 10d
└→ manuscript-revision-01-generate (done · →124k ←10k ◎1.0M §137k) 10d ✉2
├→ manuscript-revision-02-operating (done · →33k ←3.6k ◎285k §426k) 10d ─────┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──
│ ├→ manuscript-revision-a-fanin (done · →210k ←20k ◎2.9M §686k) 10d ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ ├→ manuscript-revision-bf-fanin (done · →171k ←14k ◎2.0M §648k) 10d ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ ├→ manuscript-revision-cd-fanin (done · →99k ←10.0k ◎1.2M §330k) 10d ──────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ └→ manuscript-revision-final-fanin (done · →82k ←11k ◎1.1M §111k) 10d ─────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ └→ manuscript-revision-paper-patch (done · →199k ←17k ◎1.5M §433k) 10d │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
│ └→ manuscript-revision-qa (done · →97k ←7.1k ◎717k §141k) 10d │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-a1 (done · →228k ←19k ◎3.0M §217k) 10d ←──────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ manuscript-revision-a2 (done · →111k ←12k ◎766k §284k) 10d ←──────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ manuscript-revision-a3 (done · →220k ←11k ◎2.0M §131k) 10d ←──────────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ manuscript-revision-a4 (done · →94k ←5.9k ◎822k §261k) 10d ←──────────────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ manuscript-revision-a5 (done · →119k ←7.0k ◎891k §445k) 10d ←─────────────────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ manuscript-revision-b0 (done · →231k ←16k ◎3.1M §360k) 10d ←──────────────────────────────────┘ ──┤ ──┤ ──┤ │ │ │ │ │ │
├→ manuscript-revision-b1 (done · →101k ←8.3k ◎897k §286k) 10d ←─────────────────────────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ manuscript-revision-b4 (done · →126k ←12k ◎1.7M §163k) 10d ←──────────────────────────────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ manuscript-revision-b5 (done · →124k ←10k ◎2.1M §221k) 10d ←──────────────────────────────────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ manuscript-revision-c0a (done · →139k ←15k ◎1.5M §565k) 10d ←─────────────────────────────────────────────────┘ ──┼ ──┼ ──┤ ──┼ ──┤ ──
├→ manuscript-revision-c0b (done · →212k ←23k ◎3.6M §1.1M) 10d ←─────────────────────────────────────────────────────┘ ──┼ ──┼ ──┼ ──┤ ──
├→ manuscript-revision-c0c (done · →202k ←16k ◎2.4M §290k) 10d ←─────────────────────────────────────────────────────────┘ ──┼ ──┼ ──┼ ──
├→ manuscript-revision-c1 (done · →104k ←9.7k ◎1.3M §200k) 10d ←─────────────────────────────────────────────────────────────┘ ──┼ ──┼ ──
├→ manuscript-revision-c2 (done · →118k ←10k ◎1.4M §200k) 10d ←──────────────────────────────────────────────────────────────────┘ ──┼ ──
├→ manuscript-revision-c3 (done · →140k ←8.4k ◎1.8M §172k) 10d ←─────────────────────────────────────────────────────────────────────┘ ──
├→ manuscript-revision-e1 (done · →162k ←8.8k ◎1.9M §555k) 10d ←─────────────────────────────────────────────────────────────────────────
├→ manuscript-revision-f1 (done · →149k ←8.2k ◎1.6M §84k) 10d ←──────────────────────────────────────────────────────────────────────────
├→ manuscript-revision-f3 (done · →149k ←19k ◎3.1M §346k) 10d ←──────────────────────────────────────────────────────────────────────────
└→ manuscript-revision-g0 (done · →108k ←7.7k ◎1.1M §119k) 10d ←─────────────────────────────────────────────────────────────────────────
review-zoom-v9-slide06a-q-axis-kbp (done · →256k ←36k ◎4.9M §752k · ⌁100) 1mo
└→ review-zoom-v9-fanin-render (done · →520k ←33k ◎6.1M §156k · ⌁100) 1mo ✉4 ←──────────┐
review-zoom-v9-leiden-figure-slide (done · →215k ←18k ◎2.2M §261k · ⌁100) 1mo ──────────┤
review-zoom-v9-labels-superpop-stats-polish (done · →156k ←59k ◎11M §506k · ⌁100) 1mo ──┤
review-zoom-v9-slide10m2-better-3d-viz (done · →771k ←42k ◎12M §510k · ⌁50) 1mo ────────┤
review-zoom-v9-broom-jaccard-method-slides (done · →224k ←24k ◎5.2M §241k · ⌁100) 1mo ──┘
review-zoom-v5-copy-number-enrichment-inventory (done · →248k ←35k ◎8.0M §703k · ⌁100) 1mo
├→ review-zoom-v5-copy-number-enrichment-figures (done · →367k ←50k ◎7.5M §464k · ⌁100) 1mo
│ └→ review-zoom-v5-enrichment-fanin-render (done · →1.0M ←40k ◎11M §228k · ⌁100) 1mo ✉2 ←────────────────────┐
│ └→ review-zoom-v5-phr-jaccard-method-slide (done · →306k ←35k ◎8.0M §314k · ⌁50) 1mo │
│ └→ review-zoom-v5-pggb-gfalook-2d-render (done · →220k ←46k ◎6.7M §229k) 1mo │
│ └→ review-zoom-v6-dipc-validation-slides (done · →470k ←55k ◎9.7M §386k · ⌁50) 1mo │
│ └→ review-zoom-v6-pggb-graph-black (done · →312k ←35k ◎4.2M §215k) 1mo │
│ └→ review-zoom-v6-community-assignment-method-slide (done · →306k ←42k ◎7.5M §258k · ⌁50) 1mo │
│ ├→ review-zoom-v7-gene-enrichment-report-backed (done · →166k ←35k ◎6.5M §296k · ⌁50) 1mo ──────┼ ──┐
│ ├→ review-zoom-v7-hic-3d-plots (done · →359k ←32k ◎6.8M §359k · ⌁50) 1mo ───────────────────────┼ ──┤
│ ├→ review-zoom-v7-hic-mapq0-method-slide (done · →287k ←35k ◎5.7M §645k · ⌁50) 1mo ─────────────┼ ──┤
│ ├→ review-zoom-v7-slide06a-length-histogram-restore (done · →228k ←26k ◎3.3M §446k · ⌁50) 1mo ──┼ ──┤
│ ├→ review-zoom-v7-slide08b-nearest-superpop-mds (done · →782k ←38k ◎7.9M §441k · ⌁50) 1mo ──────┼ ──┤
│ ├→ review-zoom-v7-slide09-community-mds-layout (done · →379k ←33k ◎4.7M §568k · ⌁50) 1mo ───────┼ ──┤
│ └→ review-zoom-v7-fanin-render (done · →451k ←38k ◎6.5M §267k · ⌁50) 1mo ───────────────────────┼ ←─┘
│ ├→ review-zoom-v8-chm13-ucsc-example-selection (done · →570k ←40k ◎13M §389k · ⌁50) 1mo ──────┼ ──┐
│ ├→ review-zoom-v8-hic-dipc-clarity-split (done · →785k ←66k ◎16M §595k · ⌁100) 1mo ───────────┼ ──┤
│ ├→ review-zoom-v8-mds-superpop-community-polish (done · →1.0M ←44k ◎15M §560k · ⌁100) 1mo ────┼ ──┤
│ ├→ review-zoom-v8-slide06a-length-alternatives (done · →378k ←43k ◎5.5M §599k · ⌁100) 1mo ────┼ ──┤
│ ├→ review-zoom-v8-typography-legend-cleanup (done · →1.1M ←63k ◎15M §349k · ⌁50) 1mo ─────────┼ ──┤
│ └→ review-zoom-v8-fanin-render (done · →767k ←43k ◎6.8M §330k · ⌁100) 1mo ────────────────────┼ ←─┘
└→ review-zoom-v5-copy-number-enrichment-narrative (done · →156k ←24k ◎2.9M §267k · ⌁50) 1mo ─────────────────┤
review-zoom-v5-07a-tree-community-heatmaps (done · →321k ←56k ◎7.6M §739k · ⌁50) 1mo ✉2 ──────────────────────┘
meiosis-prophase-fish-background-review-deck (done · →577k ←57k ◎14M §382k · ⌁50) 1mo ↩5
chm13-phr-ucsc-browser-suite (done · →316k ←47k ◎7.6M §718k · ⌁100) 1mo
review-zoom-git-provenance-audit (done · →202k ←32k ◎7.3M §92k · ⌁50) 1mo
├→ review-zoom-03b-erdos-renyi (done · →225k ←20k ◎2.4M §464k · ⌁50) 1mo ────────────────┐
├→ review-zoom-04-hprcv2-karyogram (done · →133k ←22k ◎2.2M §175k · ⌁50) 1mo ────────────┤
├→ review-zoom-06-length-redesign (done · →386k ←40k ◎5.4M §421k · ⌁50) 1mo ─────────────┤
├→ review-zoom-07a-heatmap-tree-pq (done · →376k ←42k ◎5.4M §398k · ⌁50) 1mo ────────────┤
├→ review-zoom-07b-tree-complete-unrooted (done · →458k ←38k ◎6.5M §392k · ⌁50) 1mo ─────┤
├→ review-zoom-08b-superpop-dispersion (done · →372k ←41k ◎9.9M §710k · ⌁50) 1mo ────────┤
├→ review-zoom-09-mds-community-leading (done · →444k ←30k ◎6.1M §549k · ⌁50) 1mo ───────┤
├→ review-zoom-14-gene-background (done · →190k ←24k ◎3.7M §329k · ⌁50) 1mo ─────────────┤
├→ review-zoom-14-gene-enrichment-or4f (done · →683k ←39k ◎11M §524k · ⌁50) 1mo ─────────┤
├→ review-zoom-density-methods-narrative (done · →242k ←22k ◎7.5M §560k · ⌁50) 1mo ──────┤
├→ review-zoom-hic-figure-redesign (done · →374k ←39k ◎6.6M §373k · ⌁50) 1mo ────────────┤
├→ review-zoom-hic-methods-glossary (done · →212k ←29k ◎6.2M §591k · ⌁50) 1mo ───────────┤
├→ render-bog-annotated-zoom-v2-review-fanin (done · →140k ←48k ◎6.6M §360k · ⌁50) 1mo ←─┘ ──────────┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐
│ └→ render-bog-annotated-zoom-v3-correction-fanin (done · →158k ←45k ◎9.9M §396k · ⌁50) 1mo ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ review-zoom-v4-slide10a-xaxis-orientation-fix (done · →430k ←51k ◎6.6M §314k · ⌁100) 1mo ✉2 │ │ │ │ │ │ │ │ │ │
├→ review-zoom-v3-gene-browser-inventory (done · →236k ←39k ◎8.8M §578k · ⌁50) 1mo ←─────────────────┘ ──┤ │ │ │ │ │ │ │ │
├→ review-zoom-v3-gene-browser-render-assets (done · →536k ←42k ◎7.2M §376k · ⌁50) 1mo ←─────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
├→ review-zoom-v3-human-3d-dotplot-correlation (done · →366k ←31k ◎4.9M §625k · ⌁50) 1mo ←───────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
├→ review-zoom-v3-slide06-violin-censor (done · →359k ←30k ◎4.4M §349k · ⌁50) 1mo ←──────────────────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
├→ review-zoom-v3-slide07a-crisp-aligned (done · →287k ←34k ◎3.9M §507k · ⌁50) 1mo ←─────────────────────────────────┘ ──┼ ──┼ ──┼ ──┼ ──┼
├→ review-zoom-v3-slide07c-acrocentric-presence (done · →450k ←31k ◎5.2M §732k · ⌁50) 1mo ←──────────────────────────────┘ ──┼ ──┼ ──┼ ──┼
├→ review-zoom-v3-slide08b-within-pop-pairwise (done · →316k ←36k ◎3.5M §682k · ⌁50) 1mo ←───────────────────────────────────┘ ──┼ ──┼ ──┼
├→ review-zoom-v3-slide09-label-all-communities (done · →323k ←31k ◎4.5M §535k · ⌁50) 1mo ←──────────────────────────────────────┘ ──┼ ──┼
├→ review-zoom-v3-slide10a-axis-box-fix (done · →204k ←38k ◎7.5M §322k · ⌁50) 1mo ←──────────────────────────────────────────────────┘ ──┼
└→ review-zoom-v3-slide11-wb-labels (done · →266k ←26k ◎3.5M §350k · ⌁50) 1mo ←──────────────────────────────────────────────────────────┘
render-bog-annotated (done · →118k ←47k ◎6.3M §9.7k) 1mo
└→ render-bog-annotated-zoom (done · →824k ←45k ◎7.8M §361k · ⌁50) 1mo ✉6
fix-bog-review (done · →82k ←34k ◎4.7M §10k) 1mo
update-abstract-rename (done · →34k ←8.2k ◎469k §4.2k) 1mo
├→ lit-review-topic-01 (done · →17k ←1.7k ◎103k §1.9k) 1mo ────┐
├→ lit-review-topic-02 (done · →11k ←1.3k ◎75k §2.5k) 1mo ─────┤
├→ lit-review-topic-03 (done · →206k ←15k ◎2.2M §8.0k) 1mo ────┤
├→ lit-review-topic-04 (abandoned) 1mo │
├→ lit-review-topic-04-2 (done · →14k ←1.3k ◎75k §2.2k) 1mo ───┤
├→ lit-review-topic-05 (done · →24k ←1.6k ◎88k §2.7k) 1mo ─────┤
├→ lit-review-topic-05-2 (done · →230k ←21k ◎4.3M §8.9k) 1mo ──┼ ──┐
├→ lit-review-topic-06 (done · →10k ←1.3k ◎76k §2.9k) 1mo ─────┤ │
├→ lit-review-topic-07 (done · →11k ←1.3k ◎74k §2.2k) 1mo ─────┤ │
├→ lit-review-topic-07-2 (done · →83k ←19k ◎1.7M §8.4k) 1mo ───┼ ──┤
├→ lit-review-topic-08 (done · →16k ←2.0k ◎154k §2.3k) 1mo ────┤ │
├→ lit-review-topic-09 (done · →9.9k ←1.4k ◎76k §2.2k) 1mo ────┤ │
├→ lit-review-topic-10 (done · →18k ←2.2k ◎108k §1.4k) 1mo ────┤ │
├→ lit-review-topic-11 (abandoned) 1mo │ │
├→ lit-review-topic-11-2 (done · →218k ←22k ◎3.4M §7.2k) 1mo ──┤ │
├→ lit-review-topic-12 (done · →21k ←1.3k ◎88k §2.0k) 1mo ─────┤ │
├→ lit-review-topic-13 (done · →14k ←1.7k ◎98k §2.3k) 1mo ─────┤ │
├→ lit-review-topic-14 (done · →14k ←1.6k ◎103k §2.3k) 1mo ────┤ │
├→ lit-review-synthesis (done · →433k ←6.8k ◎13M) 1mo ←────────┘ ──┤
└→ lit-review-v2 (done · →147k ←68k ◎3.8M §13k) 1mo ←──────────────┘
└→ render-lit-review (done · →51k ←13k ◎2.5M §9.4k) 1mo
build-bog-v2-3 (done · →442k ←29k ◎5.7M §11k) 1mo
build-bog-v2-2 (done · →186k ←55k ◎15M §9.2k) 1mo
.coordinator-2 (abandoned) 2mo [turn 0]
.coordinator-3 (abandoned) 2mo [turn 0]
‖ build-bog-brainstorm (abandoned · §1.8k) 1mo
‖ build-bog-v2 (abandoned) 1mo
nj-tree-from (done · →110k ←32k ◎4.3M §8.7k) 1mo
└→ bog-v2-slide-07 (done · →103k ←15k ◎2.1M §11k) 1mo
└→ bog-v2-slides (done · →138k ←34k ◎2.1M §10k) 1mo ←─┐
bog-v2-slide-01 (done · →50k ←8.6k ◎1.1M §12k) 1mo ─────┤
bog-v2-slide-02 (done · →51k ←8.7k ◎1.9M §11k) 1mo ─────┤
bog-v2-slide-03 (done · →55k ←13k ◎1.6M §12k) 1mo ──────┤
bog-v2-slide-04 (done · →45k ←9.2k ◎1.1M §10k) 1mo ─────┤
bog-v2-slide-05 (done · →48k ←13k ◎1.6M §12k) 1mo ──────┤
bog-v2-slide-06 (done · →71k ←17k ◎2.4M §14k) 1mo ──────┤
bog-v2-slide-08 (done · →74k ←14k ◎2.9M §10k) 1mo ──────┤
bog-v2-slide-09 (done · →82k ←22k ◎2.8M §9.8k) 1mo ─────┤
bog-v2-slide-10 (done · →63k ←8.2k ◎1.4M §11k) 1mo ─────┤
bog-v2-slide-11 (done · →43k ←8.5k ◎977k §10k) 1mo ─────┤
bog-v2-slide-12 (done · →72k ←16k ◎2.6M §6.8k) 1mo ─────┤
bog-v2-slide-13 (done · →91k ←12k ◎1.6M §11k) 1mo ──────┤
bog-v2-slide-14 (done · →104k ←21k ◎4.4M §12k) 1mo ─────┤
bog-v2-slide-15 (done · →60k ←9.9k ◎1.3M §14k) 1mo ─────┘
‖ improve-bog-slides (abandoned) 1mo
read-end-to (done · →234k ←35k ◎4.0M §15k) 1mo
park-off-target (done · →172k ←51k ◎4.8M §8.5k) 1mo
└→ audit-canonical-materials (done · →229k ←48k ◎10M §9.5k) 1mo
‖ audit-existing-manuscript (abandoned) 1mo
render-manuscript-draft-4 (done · →77k ←19k ◎3.8M §7.8k) 1mo
‖ render-manuscript-draft-3 (abandoned · §1.4k) 1mo
render-manuscript-draft-2 (failed · →192k ←3.4k ◎3.2M §1.8k) 1mo
‖ render-manuscript-draft (abandoned) 1mo
survey-pipeline-section (done · →12k ←4.4k ◎1.9M §11k) 1mo
└→ synthesize-paper-rough (done · →709 ←24 ◎263k §13k) 1mo ←─────────────────┐
├→ figure-1-landscape-communities (done · →692 ←45 ◎139k §11k) 1mo ────────┼ ──┐
├→ figure-2-heterogeneity-population (done · →104k ←33k ◎5.0M §8.4k) 1mo ──┼ ──┤
├→ figure-3-3d-convergence (done · →132k ←52k ◎10M §8.7k) 1mo ─────────────┼ ──┤
├→ figure-4-pedigree-mouse (done · →163k ←47k ◎10M §9.3k) 1mo ─────────────┼ ──┤
├→ figure-ed1-ed2-pipeline-seqlevel (done · →232 ←23 ◎170k §12k) 1mo ──────┼ ──┤
├→ figure-ed3-ed4-annotation-genes (done · →560 ←61 ◎138k §12k) 1mo ───────┼ ──┤
├→ figure-ed5-hic-robustness (done · →132k ←37k ◎5.6M §7.3k) 1mo ──────────┼ ──┤
├→ figure-ed6-ed7-singlecell-mouse (done · →130k ←31k ◎5.2M §8.3k) 1mo ────┼ ──┤
├→ figure-ed8-discussion-models (done · →170k ←56k ◎11M §11k) 1mo ─────────┼ ──┤
├→ validate-acceptance-checklist (done · →83k ←21k ◎1.7M §15k) 1mo ────────┼ ──┤
├→ validate-captions-references (done · →95k ←22k ◎2.2M §5.1k) 1mo ────────┼ ──┤
├→ validate-reproducibility-paths (done · →225k ←44k ◎7.3M §12k) 1mo ──────┼ ──┤
├→ validate-statistics-fdr-cis (done · →201k ←38k ◎7.2M §11k) 1mo ─────────┼ ──┤
└→ compile-manuscript-draft (done · →885 ←86 ◎134k §11k) 1mo ──────────────┼ ←─┘
survey-annotation-section (done · →809 ←56 ◎62k §7.6k) 1mo ──────────────────┤
survey-gene-enrichment (done · →334 ←32 ◎171k §11k) 1mo ─────────────────────┤
survey-heterogeneity-section (done · →140 ←26 ◎112k §9.5k) 1mo ──────────────┤
survey-hi-c (done · →106 ←9 ◎98k §12k) 1mo ──────────────────────────────────┤
survey-dip-c (done · →223 ←92 ◎187k §11k) 1mo ───────────────────────────────┤
survey-integrated-interpretation (done · →69k ←17k ◎861k §12k) 1mo ──────────┤
survey-mouse-cross (done · →70k ←22k ◎1.1M §10k) 1mo ────────────────────────┤
survey-rpe-1-self (done · →69k ←18k ◎1.2M §8.0k) 1mo ────────────────────────┤
survey-pedigree-recombination (done · →117k ←24k ◎3.2M §12k) 1mo ────────────┤
survey-limitations-summary (done · →75k ←24k ◎1.9M §10k) 1mo ────────────────┤
survey-figure-inventory (done · →79k ←22k ◎2.6M §9.5k) 1mo ──────────────────┤
survey-data-table (done · →73k ←14k ◎1.5M §7.4k) 1mo ────────────────────────┤
survey-cytogenetic-fish (done · →114k ←18k ◎1.8M §11k) 1mo ──────────────────┘
.coordinator-1 (abandoned) 2mo [turn 54]
.coordinator-0 (abandoned) 2mo [turn 1]
write-feedback-document (done · →17k ←3.6k ◎75k §10k) 1mo ✉1
merge-archive-into-graph (done · →145k ←50k ◎9.8M §12k) 1mo
.user-erikg-0 (abandoned) 2mo ✉56
.evolve-partition-run-20260402-235845 (done) 2mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-235845 (done · →32k ←5.4k ◎260k) 2mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-235845 (done · →63k ←24k ◎1.4M) 2mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-235845 (done · →52k ←9.3k ◎991k) 2mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-235845 (done · →40k ←8.0k ◎467k) 2mo ──────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-235845 (done · →77k ←10k ◎887k) 2mo ────────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-235845 (done · →55k ←8.7k ◎818k) 2mo ──┤
├→ .evolve-analyze-mutation-run-20260402-235845 (done · →45k ←6.5k ◎784k) 2mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-235845 (done · →43k ←7.7k ◎653k) 2mo ──────┤
└→ .evolve-synthesize-run-20260402-235845 (done · →51k ←27k ◎763k) 2mo ←─────────────────┘
└→ .evolve-apply-run-20260402-235845 (done · →46k ←7.8k ◎1.0M) 2mo
└→ .evolve-evaluate-run-20260402-235845 (done · →50k ←9.8k ◎748k) 2mo
build-community-legend (done · →33k ←3.8k ◎264k §5.7k) 2mo
└→ reformat-gene-family (done · →63k ←12k ◎1.2M §11k) 2mo
fix-executive-summary (done · →37k ←8.5k ◎634k §7.0k) 2mo
executive-summary-combined (done · →67k ←11k ◎1.6M §10k) 2mo
write-bug-report (done · →17k ←3.0k ◎171k §5.2k) 2mo
.evolve-partition-run-20260402-150803 (done) 2mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-150803 (done · →38k ←7.7k ◎531k) 2mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-150803 (done · →61k ←17k ◎1.5M) 2mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-150803 (done · →37k ←7.4k ◎848k) 2mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-150803 (done · →31k ←11k ◎594k) 2mo ───────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-150803 (done · →29k ←10.0k ◎459k) 2mo ──────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-150803 (done · →42k ←10k ◎725k) 2mo ───┤
├→ .evolve-analyze-mutation-run-20260402-150803 (done · →27k ←6.5k ◎487k) 2mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-150803 (done · →16k ←5.6k ◎395k) 2mo ──────┤
└→ .evolve-synthesize-run-20260402-150803 (done · →46k ←24k ◎623k) 2mo ←─────────────────┘
└→ .evolve-apply-run-20260402-150803 (done · →37k ←6.2k ◎1.0M) 2mo
└→ .evolve-evaluate-run-20260402-150803 (done · →33k ←11k ◎447k) 2mo
.evolve-partition-run-20260402-150503 (done) 2mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-150503 (done · →30k ←6.6k ◎370k) 2mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-150503 (done · →48k ←17k ◎1.3M) 2mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-150503 (done · →49k ←9.7k ◎978k) 2mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-150503 (done · →36k ←12k ◎685k) 2mo ───────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-150503 (done · →34k ←12k ◎395k) 2mo ────────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-150503 (done · →40k ←9.6k ◎871k) 2mo ──┤
├→ .evolve-analyze-mutation-run-20260402-150503 (done · →27k ←5.6k ◎522k) 2mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-150503 (done · →38k ←6.4k ◎378k) 2mo ──────┤
└→ .evolve-synthesize-run-20260402-150503 (done · →47k ←25k ◎472k) 2mo ←─────────────────┘
└→ .evolve-apply-run-20260402-150503 (done · →38k ←8.7k ◎1.2M) 2mo
└→ .evolve-evaluate-run-20260402-150503 (done · →37k ←12k ◎742k) 2mo
bug-report-wg (done · →21k ←4.4k ◎565k §8.9k) 2mo
fix-ensure-all (done · →42k ←17k ◎3.5M §5.3k) 2mo
└→ fact-check-validate (done · →58k ←16k ◎1.9M §6.8k) 2mo
urgent-validate-and (done · →67k ←25k ◎3.7M §6.2k) 2mo ↩3
deep-research-or4f (done · →33k ←4.8k ◎488k §5.2k) 2mo
├→ multi-copy-or (done · →29k ←6.0k ◎490k §5.0k) 2mo ─────────────────────┐
├→ or4f-copy-number (done · →24k ←6.7k ◎574k §5.1k) 2mo ──────────────────┤
├→ or4f-disease-associations (done · →19k ←4.8k ◎306k §5.3k) 2mo ─────────┤
├→ or4f-functional-characterization (done · →33k ←7.3k ◎854k §5.9k) 2mo ──┤
├→ phr-or-biology (done · →42k ←9.2k ◎1.1M §5.6k) 2mo ────────────────────┤
├→ subtelomeric-or-gene (done · →22k ←5.4k ◎385k §5.1k) 2mo ──────────────┤
├→ synthesis-integrate-deep (done · →48k ←7.4k ◎690k §5.0k) 2mo ──────────┼ ←─┐
└→ integrate-or4f-deep (done · →38k ←9.5k ◎675k §5.7k) 2mo ←──────────────┘ │
deep-research-dux4 (done · →39k ←12k ◎696k §5.3k) 2mo ────────────────────────┤
deep-research-tubb8 (done · →47k ←9.1k ◎938k §6.1k) 2mo ──────────────────────┤
├→ tubb8-basic-biology (done · →17k ←4.3k ◎252k §5.9k) 2mo ───────────────────┼ ──┐
├→ tubb8-copy-number (done · →57k ←17k ◎1.9M §7.0k) 2mo ──────────────────────┼ ──┤
│ ├→ tubb8-assembly-comparison (done · →36k ←7.7k ◎959k §7.8k) 2mo ───────────┼ ──┼ ──┐
│ ├→ tubb8-copy-number-2 (done · →40k ←14k ◎1.4M §7.2k) 2mo ──────────────────┼ ──┼ ──┤
│ ├→ tubb8-copy-number-3 (done · →40k ←14k ◎1.3M §5.7k) 2mo ──────────────────┼ ──┼ ──┤
│ ├→ tubb8-functional-vs (done · →39k ←6.1k ◎666k §4.8k) 2mo ─────────────────┼ ──┼ ──┤
│ ├→ tubb8b-copy-number (done · →38k ←15k ◎772k §5.7k) 2mo ───────────────────┼ ──┼ ──┤
│ └→ integrate-tubb8-literature (done · →32k ←11k ◎951k §8.8k) 2mo ───────────┼ ──┼ ←─┘
├→ tubb8-mutations-and (done · →26k ←7.0k ◎328k §4.8k) 2mo ───────────────────┼ ──┤
├→ tubb8-t2t-assembly (done · →20k ←6.3k ◎293k §5.5k) 2mo ────────────────────┼ ──┤
├→ tubb8b-paralog-characterization (done · →30k ←9.2k ◎507k §7.6k) 2mo ───────┼ ──┤
├→ tubulin-subtelomeric-positioning (done · →29k ←9.3k ◎460k §5.4k) 2mo ──────┼ ──┤
└→ tubb8-research-synthesis (done · →64k ←18k ◎1.3M §5.9k) 2mo ───────────────┼ ←─┘
deep-research-gtp (done · →44k ←11k ◎867k §5.8k) 2mo ─────────────────────────┘
review-extract-and (done · →31k ←8.8k ◎792k §14k) 2mo
├→ update-revise-phr (done · →30k ←9.6k ◎276k §2.5k) 2mo ────┐
├→ update-revise-phr-2 (done · →30k ←7.6k ◎426k §4.1k) 2mo ──┤
└→ validate-cross-check (done · →0 ←0 §3.6k) 2mo ←───────────┘
└→ clean-commit-stage (done · →0 ←0 §5.7k) 2mo
integration-testing-copy (done · →46k ←22k ◎1.9M §7.2k) 2mo
research-copy-number (done · →25k ←4.7k ◎347k §7.7k) 2mo
├→ check-tool-availability (done · →17k ←5.8k ◎411k §7.0k) 2mo ──────────────────┐
├→ implement-copy-number (done · →50k ←19k ◎1.6M §6.6k) 2mo │
├→ investigate-copy-number (done · →67k ←22k ◎2.3M §8.7k) 2mo ───────────────────┤
│ ├→ analyze-statistical-framework (done · →34k ←18k ◎568k §5.2k) 2mo ───────────┼ ──┐
│ ├→ investigate-weighted-hypergeometric (done · →26k ←7.7k ◎394k §9.2k) 2mo ────┼ ──┤
│ ├→ research-r-phyper (done · →48k ←19k ◎1.2M §11k) 2mo ────────────────────────┼ ──┤
│ │ ├→ benchmark-phyper-computational (done · →42k ←21k ◎1.4M §6.5k) 2mo ────────┼ ──┼ ──┐
│ │ ├→ map-copy-number (done · →28k ←2.4k ◎315k §5.8k) 2mo ──────────────────────┼ ──┼ ──┤ ←─┐
│ │ │ ├→ edge-case-analysis (done · →0 ←0 §20k) 2mo │ │ │ │
│ │ │ ├→ integration-testing-with (abandoned · →46k ←19k ◎1.6M §1.6k) 2mo ───────┼ ──┼ ──┼ ──┼ ──┐
│ │ │ ├→ mathematical-formulation-of (done · →17k ←3.4k ◎294k §2.7k) 2mo │ │ │ │ │
│ │ │ ├→ mathematical-verification-of (done · →59k ←18k ◎2.4M §8.4k) 2mo ────────┼ ──┼ ──┼ ──┼ ──┤
│ │ │ ├→ performance-benchmarking-parameter (done · →43k ←21k ◎1.5M §8.4k) 2mo ──┼ ──┼ ──┼ ──┼ ──┤
│ │ │ ├→ robust-r-code (done · →23k ←3.3k ◎374k §4.6k) 2mo │ │ │ │ │
│ │ │ ├→ statistical-validation-framework (done · →23k ←3.0k ◎312k §4.7k) 2mo │ │ │ │ │
│ │ │ └→ synthesize-parameter-mapping (done · →41k ←17k ◎1.6M §8.5k) 2mo ────────┼ ──┼ ──┼ ──┼ ←─┘
│ │ ├→ research-r-alternatives (done · →36k ←17k ◎613k §6.5k) 2mo ───────────────┼ ──┼ ──┤ │
│ │ ├→ validate-weighted-phyper (done · →71k ←41k ◎2.0M §37k) 2mo ───────────────┼ ──┼ ──┤ │
│ │ ├→ verify-weighted-phyper (done · →46k ←19k ◎1.1M §8.2k) 2mo ────────────────┼ ──┼ ──┤ │
│ │ └→ synthesize-r-phyper (done · →0 ←0 §2.7k) 2mo ─────────────────────────────┼ ──┼ ←─┘ │
│ ├→ survey-existing-copy (done · →28k ←6.3k ◎392k §6.7k) 2mo ───────────────────┼ ──┤ │
│ └→ synthesize-copy-number (done · →44k ←7.5k ◎600k §5.0k) 2mo ─────────────────┼ ←─┘ │
├→ investigate-gat-genomic (done · →30k ←7.9k ◎1.2M §6.5k) 2mo ──────────────────┤ │
├→ investigate-great-rgreat (done · →22k ←5.1k ◎382k §5.7k) 2mo ─────────────────┤ │
├→ investigate-permutation-based (done · →37k ←10.0k ◎722k §7.2k) 2mo ───────────┤ │
├→ investigate-weighted-gene (done · →30k ←6.6k ◎425k §5.2k) 2mo ────────────────┤ │
├→ literature-search-copy (done · →22k ←6.0k ◎424k §6.9k) 2mo ───────────────────┤ │
└→ synthesize-findings-and (done · →47k ←8.9k ◎639k §7.4k) 2mo ←─────────────────┘ │
fix-implement-copy (done · →62k ←24k ◎2.1M §1.5k) 2mo ───────────────────────────────────────┘
fix-map-copy-2 (done · →56k ←17k ◎2.2M §13k) 2mo
├→ edge-case-analysis-2 (done · →17k ←1.5k ◎105k §11k) 2mo ──────────────────┐
├→ robust-r-code-2 (done · →56k ←31k ◎2.1M §10k) 2mo ────────────────────────┤
├→ statistical-validation-framework-2 (done · →17k ←3.1k ◎252k §15k) 2mo ────┤
│ ├→ null-distribution-validation (done · →48k ←16k ◎2.1M §9.9k) 2mo ────────┼ ──┐
│ ├→ parameter-constraint-validation (done · →74k ←34k ◎4.0M §8.1k) 2mo ─────┼ ──┤
│ ├→ type-i-error (done · →44k ←16k ◎1.5M §9.1k) 2mo ────────────────────────┼ ──┤
│ └→ statistical-validation-framework-3 (done · →66k ←25k ◎2.6M §3.3k) 2mo ──┼ ←─┘
└→ synthesize-r-phyper-2 (done · →18k ←4.1k ◎392k §8.2k) 2mo ←───────────────┘
├→ final-recommendations-synthesis (done · →41k ←5.6k ◎861k §8.1k) 2mo ───────────┐
│ ├→ decision-framework-recommendations (done · →28k ←7.1k ◎460k §10k) 2mo ───────┼ ──┐
│ ├→ implementation-roadmap-recommendations (done · →28k ←9.0k ◎473k §5.9k) 2mo ──┼ ──┤
│ ├→ methodology-synthesis-recommendations (done · →37k ←6.8k ◎462k §7.7k) 2mo ───┼ ──┤
│ ├→ use-case-scenarios (done · →34k ←7.4k ◎478k §8.8k) 2mo ──────────────────────┼ ──┤
│ └→ integrate-final-recommendations (done · →44k ←12k ◎513k §7.9k) 2mo ──────────┼ ←─┘
├→ implementation-best-practices (done · →41k ←9.7k ◎452k §7.3k) 2mo ─────────────┤
├→ methodology-synthesis-documentation (done · →37k ←7.9k ◎583k §6.4k) 2mo ───────┤
├→ performance-and-accuracy (done · →41k ←7.1k ◎799k §6.5k) 2mo ──────────────────┤
└→ integration-and-final (done · →35k ←9.4k ◎765k §7.8k) 2mo ←────────────────────┘
fix-mark-fix (done · →27k ←4.9k ◎619k §8.3k) 2mo
fix-verify-fix (abandoned · §5.1k) 2mo
fix-map-copy (done · →36k ←8.0k ◎1.1M §9.7k) 2mo ✉1
└→ map-copy-number-2 (done · →16k ←3.5k ◎288k §7.8k) 2mo
fix-resolve-fix (done · →28k ←5.7k ◎885k §6.9k) 2mo
map-every-protein (done · →51k ←12k ◎1.1M §9.5k) 2mo
write-paper-ready (done · →39k ←8.1k ◎477k §12k) 2mo
go-enrichment-on (done · →58k ←13k ◎1.6M §7.9k) 2mo
detailed-mapping-enriched (done · →82k ←20k ◎2.7M §12k) 2mo
research-snrnp-assembly (done · →39k ←11k ◎1.0M §7.6k) 2mo
└→ synthesis-phr-gene (done · →22k ←5.8k ◎358k §7.3k) 2mo ←────────┐
research-olfactory-receptor (done · →32k ←9.3k ◎910k §8.8k) 2mo ───┤
research-post-transcriptional (done · →51k ←13k ◎1.7M §7.3k) 2mo ──┤
research-neuron-projection (done · →23k ←4.9k ◎566k §5.8k) 2mo ────┘
rerun-enrichment-excluding (done · →42k ←15k ◎1.5M §7.0k) 2mo
report-show-enrichment (done · →19k ←4.5k ◎337k §6.9k) 2mo
research-inventory-files (done · →28k ←6.6k ◎729k §7.3k) 2mo
└→ step-1-extract-chm13 (done · →17k ←3.6k ◎439k §7.1k) 2mo
└→ step-2-intersect-genes (done · →25k ←6.5k ◎1.0M §5.6k) 2mo
└→ step-3-run-go (done · →34k ←14k ◎1.8M §5.7k) 2mo
└→ step-4-compare-phr (done · →33k ←12k ◎1.2M §5.6k) 2mo
└→ step-5-reconcile-with (done · →27k ←5.6k ◎463k §6.8k) 2mo
find-the-last (done · →24k ←4.1k ◎178k §4.9k) 2mo
.html-publish-public-mirror (in-progress) 47s
.chat-7 (in-progress · ⌁50) 7d [turn 0]
.chat-6 (in-progress · ⌁50) 9d [turn 0]
.chat-5 (in-progress · ⌁50) 1mo [turn 0]
.chat-4 (in-progress · ⌁50) 1mo [turn 0]
.assign-fig5-raw-manymany-impg-similarity-2kb-sharded (done · →17k ←593 ◎7.6k · ⌁50) 7h
└→ fig5-raw-manymany-impg-similarity-2kb-sharded (done · →138k ←33k ◎5.0M §781k · ⌁50) 6h
├→ .flip-fig5-raw-manymany-impg-similarity-2kb-sharded (done · →232k ←20k ◎179k) 6h
│ └→ .evaluate-fig5-raw-manymany-impg-similarity-2kb-sharded (done · →502k ←10k ◎435k) 6h
├→ fig5-raw-manymany-impg-similarity-2kb-single-node-race (done · →95k ←20k ◎1.9M §17k · ⌁50) 2h ←─┐
├→ finalize-fig5-raw (failed · →174k ←26k ◎3.7M §17k) 6h ✉2 ───────────────────────────────────────┼ ←─┐
│ └→ .flip-finalize-fig5-raw (open · ⌁5) 6h │ │
│ └→ .evaluate-finalize-fig5-raw (open · ⌁5) 6h │ │
└→ finalize-fig5-raw-after-arrays (open · ⌁50) ⏳3h 2h │ │
.assign-finalize-fig5-raw (done · →16k ←485 ◎5.0k) 6h ───────────────────────────────────────────────┼ ──┘
.assign-fig5-raw-manymany-impg-similarity-2kb-single-node-race (done · →16k ←404 ◎4.5k · ⌁50) 2h ────┘
.assign-fig5-raw-manymany-impg-similarity-fullbed (done · →17k ←580 ◎5.5k · ⌁50) 2d
└→ fig5-raw-manymany-impg-similarity-fullbed (failed · §17k · ⌁50) 2d
└→ .flip-fig5-raw-manymany-impg-similarity-fullbed (open) 2d
└→ .evaluate-fig5-raw-manymany-impg-similarity-fullbed (open) 2d
.assign-fig5-2kb-direct-similarity-pilot (done · →16k ←829 ◎8.1k · ⌁50) 2d
└→ fig5-2kb-direct-similarity-pilot (done · →154k ←18k ◎1.7M §230k · ⌁50) 2d
├→ .flip-fig5-2kb-direct-similarity-pilot (failed) 2d
├→ fig5-whole-genome-existing-paf-impg-like-scan (done · →150k ←50k ◎9.3M §199k · ⌁50) 2d ✉2 ←─┐
│ └→ .flip-fig5-whole-genome-existing-paf-impg-like-scan (failed) 2d │
└→ harvest-fig5-wfmash (done · →127k ←9.3k ◎1.9M §417k) 2d ────────────────────────────────────┼ ←─┐
└→ .flip-harvest-fig5-wfmash (done · →248k ←11k ◎207k · ⌁5) 2d │ │
└→ .evaluate-harvest-fig5-wfmash (done · →147k ←11k ◎115k · ⌁5) 2d │ │
.assign-harvest-fig5-wfmash (done) 2d ───────────────────────────────────────────────────────────┼ ──┘
.assign-fig5-whole-genome-existing-paf-impg-like-scan (done · ⌁50) 2d ───────────────────────────┘
.evaluate-fig5-whole-genome-existing-paf-impg-like-scan (done · →189k ←9.9k ◎69k) 2d
.evaluate-fig5-2kb-direct-similarity-pilot (done · →201k ←12k ◎162k) 2d
.assign-fig5-wg-wfmash-filtered-graph-untangle-pilot (done · ⌁50) 2d
└→ fig5-wg-wfmash-filtered-graph-untangle-pilot (done · →258k ←28k ◎5.0M · ⌁50) 2d
├→ .flip-fig5-wg-wfmash-filtered-graph-untangle-pilot (failed) 2d
└→ .merge-fig5-wg-wfmash-filtered-graph-untangle-pilot (done · →88k ←9.5k ◎1.2M) 2d
.evaluate-fig5-wg-wfmash-filtered-graph-untangle-pilot (failed) 2d
.assign-fig5-pafchop-query-grid-mode (done · →17k ←286 ◎8.6k · ⌁100) 4d
└→ fig5-pafchop-query-grid-mode (done · →202k ←23k ◎3.7M §752k · ⌁100) 4d
├→ .flip-fig5-pafchop-query-grid-mode (done · →38k ←8.4k ◎17k · ⌁50) 4d
│ └→ .evaluate-fig5-pafchop-query-grid-mode (done · →667k ←20k ◎621k · ⌁50) 4d
├→ fig5-f16-query-grid-chop-filter-rerun (done · →1.5M ←68k ◎49M §1.8M · ⌁100) 3d ←──────────────┐ ──┐
│ ├→ .flip-fig5-f16-query-grid-chop-filter-rerun (done · →1.3M ←24k ◎1.1M · ⌁50) 3d │ │
│ │ └→ .evaluate-fig5-f16-query-grid-chop-filter-rerun (done · →395k ←15k ◎312k · ⌁50) 3d │ │
│ ├→ fig5-query-grid-overlap-audit (done · →247k ←25k ◎5.1M §183k · ⌁50) 3d ─────────────────────┼ ──┼ ←─┐
│ │ ├→ .flip-fig5-query-grid-overlap-audit (done · →38k ←12k ◎19k) 3d │ │ │
│ │ │ └→ .evaluate-fig5-query-grid-overlap-audit (done · →122k ←11k ◎91k) 3d │ │ │
│ │ └→ fig5-query-grid-panels-generate-real (done · →138k ←17k ◎1.7M §912k · ⌁100) 3d ───────────┼ ←─┤ ──┼ ──┐
│ │ ├→ .flip-fig5-query-grid-panels-generate-real (done · →633k ←20k ◎564k · ⌁50) 3d │ │ │ │
│ │ │ └→ .evaluate-fig5-query-grid-panels-generate-real (done · →235k ←6.6k ◎153k · ⌁50) 3d │ │ │ │
│ │ ├→ fig5-f16-f32-query-grid-comparison-panels (done · →68k ←7.2k ◎481k §1.6M · ⌁50) 2d ─────┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ └→ .flip-fig5-f16-f32-query-grid-comparison-panels (done · →1.3M ←17k ◎1.2M) 2d │ │ │ │ │
│ │ │ └→ .evaluate-fig5-f16-f32-query-grid-comparison-panels (done · →282k ←14k ◎252k) 2d │ │ │ │ │
│ │ └→ fig5-untangle-query-grid-style-panels (done · →412k ←22k ◎4.7M §1.3M · ⌁50) 3d ─────────┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ ├→ .flip-fig5-untangle-query-grid-style-panels (done · →701k ←17k ◎548k) 3d │ │ │ │ │ │
│ │ │ └→ .evaluate-fig5-untangle-query-grid-style-panels (done · →508k ←11k ◎378k) 3d │ │ │ │ │ │
│ │ └→ fig5-untangle-whole-genome-overview (done · →315k ←24k ◎1.9M §777k · ⌁50) 3d ─────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ ├→ .flip-fig5-untangle-whole-genome-overview (done · →524k ←22k ◎339k) 3d │ │ │ │ │ │ │
│ │ │ └→ .evaluate-fig5-untangle-whole-genome-overview (done · →203k ←8.6k ◎130k) 3d │ │ │ │ │ │ │
│ │ ├→ fig5-length-scaled-whole-genome-tracks (done · →141k ←20k ◎1.7M · ⌁50) 2d ✉2 ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ ├→ .flip-fig5-length-scaled-whole-genome-tracks (failed) 2d │ │ │ │ │ │ │ │
│ │ │ └→ fig5-length-scaled-exact-paf-tracks (done · →175k ←22k ◎5.6M §557k · ⌁50) 2d ✉2 ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ └→ .flip-fig5-length-scaled-exact-paf-tracks (done · →386k ←11k ◎317k) 2d │ │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-fig5-length-scaled-exact-paf-tracks (done · →135k ←9.0k ◎102k) 2d │ │ │ │ │ │ │ │ │
│ │ └→ fig5-whole-genome-alignment-overview (done · →277k ←32k ◎6.7M §17k · ⌁50) 2d ───────┼ ──┼ ──┼ ←─┤ │ │ │ │ │
│ │ └→ .flip-fig5-whole-genome-alignment-overview (failed) 3d │ │ │ │ │ │ │ │ │
│ └→ fig5-query-grid-panels-regenerate (done · →111k ←7.0k ◎643k · ⌁50) 3d ──────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-fig5-query-grid-panels-regenerate (failed) 4d │ │ │ │ │ │ │ │ │ │
├→ fig5-f32-query-grid-chop-filter-rerun (done · →669k ←54k ◎23M §17k · ⌁100) 2d ────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ←─
│ ├→ .flip-fig5-f32-query-grid-chop-filter-rerun (failed · ⌁50) 3d │ │ │ │ │ │ │ │ │ │
│ └→ fig5-f32-query-grid-overlap-audit (done · →192k ←20k ◎5.3M §17k · ⌁50) 2d ──────────────────┼ ──┼ ──┼ ──┤ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ └→ .flip-fig5-f32-query-grid-overlap-audit (failed) 3d │ │ │ │ │ │ │ │ │ │
└→ fig5-wfmash-query-grid-chop-filter (done · →161k ←23k ◎3.2M §421k · ⌁50) 3d ──────────────────┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──
└→ .flip-fig5-wfmash-query-grid-chop-filter (done · →191k ←20k ◎141k) 3d │ │ │ │ │ │ │ │ │ │
└→ .evaluate-fig5-wfmash-query-grid-chop-filter (done · →181k ←9.5k ◎143k) 3d │ │ │ │ │ │ │ │ │ │
.assign-fig5-f16-query-grid-chop-filter-rerun (done · →17k ←922 ◎8.6k · ⌁100) 4d ──────────────────┘ │ │ │ │ │ │ │ │ │
.assign-fig5-query-grid-overlap-audit (done · ⌁50) 3d ─────────────────────────────────────────────────┼ ──┘ │ │ │ │ │ │ │
.assign-fig5-query-grid-panels-regenerate (done · ⌁50) 3d ─────────────────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘
.assign-fig5-query-grid-panels-generate-real (done · →18k ←383 ◎9.6k · ⌁100) 3d ───────────────────────┘ │ │ │ │ │ │
.assign-fig5-sweepga-fastga-frequency32-raw (done · →17k ←314 ◎14k · ⌁100) 3d │ │ │ │ │ │
└→ fig5-sweepga-fastga-frequency32-raw (done · →1.1M ←80k ◎54M §1.1M · ⌁100) 2d ───────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──────
└→ .flip-fig5-sweepga-fastga-frequency32-raw (done · →318k ←19k ◎267k · ⌁50) 2d │ │ │ │ │ │
└→ .evaluate-fig5-sweepga-fastga-frequency32-raw (done · →719k ←19k ◎657k · ⌁50) 2d │ │ │ │ │ │
.assign-fig5-untangle-query-grid-style-panels (done · →18k ←951 ◎6.5k · ⌁50) 3d ───────────────────────────────┼ ──┼ ──┘ │ │ │
.assign-fig5-wfmash-query-grid-chop-filter (done · →18k ←584 ◎9.6k · ⌁50) 3d ──────────────────────────────────┼ ──┼ ──────┼ ──┼ ──┼ ──────
.assign-fig5-untangle-whole-genome-overview (done · →18k ←1.3k ◎5.5k · ⌁50) 3d ────────────────────────────────┼ ──┼ ──────┘ │ │
.assign-fig5-whole-genome-alignment-overview (done · →17k ←585 ◎5.5k) 3d ──────────────────────────────────────┘ │ │ │
.assign-fig5-f32-query-grid-chop-filter-rerun (done · →16k ←356 ◎8.1k · ⌁100) 2d ──────────────────────────────────┼ ──────────┼ ──┼ ──────
.assign-fig5-f32-query-grid-overlap-audit (done · →16k ←593 ◎8.1k · ⌁50) 2d ───────────────────────────────────────┼ ──────────┼ ──┼ ──────
.assign-fig5-f16-f32-query-grid-comparison-panels (done · ⌁50) 2d ─────────────────────────────────────────────────┘ │ │
.assign-fig5-length-scaled-whole-genome-tracks (done · ⌁50) 2d ────────────────────────────────────────────────────────────────┘ │
.assign-fig5-length-scaled-exact-paf-tracks (done · →16k ←498 ◎8.1k) 2d ───────────────────────────────────────────────────────────┘
.evaluate-fig5-length-scaled-whole-genome-tracks (failed) 2d
.evaluate-fig5-whole-genome-alignment-overview (failed) 3d
.evaluate-fig5-f32-query-grid-overlap-audit (failed) 3d
.evaluate-fig5-f32-query-grid-chop-filter-rerun (failed · ⌁50) 3d
.evaluate-fig5-query-grid-panels-regenerate (failed) 4d
.assign-fig5-raw-fasta-f16-scaffold-jump-filter-sensitivity (done · →17k ←909 ◎8.6k · ⌁50) 4d
└→ fig5-raw-fasta-f16-scaffold-jump-filter-sensitivity (done · →255k ←32k ◎5.0M §1.7M · ⌁50) 4d
└→ .flip-fig5-raw-fasta-f16-scaffold-jump-filter-sensitivity (done · →374k ←23k ◎324k) 4d
└→ .evaluate-fig5-raw-fasta-f16-scaffold-jump-filter-sensitivity (done · →1.3M ←16k ◎1.1M) 4d
.assign-fig5-raw-fasta-f16-multiway-panels (done · →17k ←588 ◎8.6k · ⌁50) 4d
└→ fig5-raw-fasta-f16-multiway-panels (done · →232k ←21k ◎3.8M §603k · ⌁50) 4d
└→ .flip-fig5-raw-fasta-f16-multiway-panels (done · →411k ←19k ◎302k) 4d
└→ .evaluate-fig5-raw-fasta-f16-multiway-panels (done · →152k ←4.1k ◎80k) 4d
.assign-fig5-raw-fasta-f16-no-chop-merge-panels (done · →17k ←578 ◎7.6k) 4d
└→ fig5-raw-fasta-f16-no-chop-merge-panels (done · →354k ←30k ◎5.4M §679k) 4d
└→ .flip-fig5-raw-fasta-f16-no-chop-merge-panels (done · →522k ←22k ◎436k · ⌁5) 4d
└→ .evaluate-fig5-raw-fasta-f16-no-chop-merge-panels (done · →109k ←9.6k ◎96k · ⌁5) 4d
.assign-fig5-raw-fasta-f16-chop-filter-sensitivity-panels (done · →17k ←578 ◎8.6k) 4d
└→ fig5-raw-fasta-f16-chop-filter-sensitivity-panels (done · →318k ←42k ◎55M §709k) 4d
└→ .flip-fig5-raw-fasta-f16-chop-filter-sensitivity-panels (done · →28k ←8.1k ◎17k · ⌁5) 4d
└→ .evaluate-fig5-raw-fasta-f16-chop-filter-sensitivity-panels (done · →639k ←16k ◎529k · ⌁5) 4d
.assign-fix-fig5-synteny (done · →17k ←269 ◎4.5k) 7d
└→ fix-fig5-synteny (done · →171k ←24k ◎2.5M §725k) 7d ✉2
├→ .flip-fix-fig5-synteny (done · →374k ←17k ◎271k) 7d
│ └→ .evaluate-fix-fig5-synteny (done · →306k ←11k ◎253k) 7d
└→ fig5-direct-sweepga-1to1-schematic (done · §17k · ⌁50) 7d ✉3 ←───────────────────────────────────────────────────┐
└→ fig5-joint-parent-sweepga (done · →230k ←23k ◎4.2M §17k · ⌁50) 7d ──────────────────────────────────────────────┼ ←─┐
└→ fig5-whole-genome-joint-parent-sweepga (done · →892k ←96k ◎64M §983k · ⌁50) 6d ✉2 ────────────────────────────┼ ──┼ ←─┐
├→ .flip-fig5-whole-genome-joint-parent-sweepga (done · →45k ←4.2k ◎37k) 6d │ │ │
│ └→ .evaluate-fig5-whole-genome-joint-parent-sweepga (done · →898k ←18k ◎823k) 6d │ │ │
└→ fig5-whole-genome-sweepga-evidence-review (done · →269k ←19k ◎3.1M §187k · ⌁50) 6d ─────────────────────────┼ ──┼ ──┼ ←─┐
├→ .flip-fig5-whole-genome-sweepga-evidence-review (done · →35k ←15k ◎16k) 6d │ │ │ │
│ └→ .evaluate-fig5-whole-genome-sweepga-evidence-review (done · →108k ←11k ◎82k) 6d │ │ │ │
└→ fig5-whole-genome-sweepga-qa-closeout (done · →101k ←9.2k ◎1.3M §228k) 6d ────────────────────────────────┼ ──┼ ──┼ ──┼ ←─┐
├→ .flip-fig5-whole-genome-sweepga-qa-closeout (done · →131k ←9.7k ◎93k) 6d │ │ │ │ │
│ └→ .evaluate-fig5-whole-genome-sweepga-qa-closeout (done · →79k ←8.6k ◎68k) 6d │ │ │ │ │
├→ fig5-whole-genome-sweepga-updated-bin (done · →558k ←53k ◎13M §191k · ⌁50) 6d ✉10 ──────────────────────┼ ──┼ ──┼ ──┼ ──┼ ←─
│ ├→ .flip-fig5-whole-genome-sweepga-updated-bin (failed) 6d │ │ │ │ │
│ ├→ .merge-fig5-whole-genome-sweepga-updated-bin (done) 6d ✉4 │ │ │ │ │
│ ├→ fig5-minimap2-longrun-chop-sweep (done · →427k ←54k ◎23M §949k · ⌁50) 5d ─────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ ├→ .flip-fig5-minimap2-longrun-chop-sweep (done · →796k ←27k ◎732k) 5d │ │ │ │ │
│ │ │ └→ .evaluate-fig5-minimap2-longrun-chop-sweep (done · →99k ←9.6k ◎73k) 5d │ │ │ │ │
│ │ ├→ fig5-minimap2-harvest-active-slurm (done · →422k ←38k ◎19M §755k · ⌁50) 4d ─────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ │ └→ .flip-fig5-minimap2-harvest-active-slurm (done · →634k ←28k ◎574k) 4d │ │ │ │ │
│ │ │ └→ .evaluate-fig5-minimap2-harvest-active-slurm (done · →70k ←7.4k ◎49k) 4d │ │ │ │ │
│ │ └→ fig5-updated-binary-direct-alignment-review (done · →92k ←15k ◎2.2M §159k · ⌁50) 5d ────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ └→ .flip-fig5-updated-binary-direct-alignment-review (done · →33k ←2.8k ◎16k) 5d │ │ │ │ │
│ │ └→ .evaluate-fig5-updated-binary-direct-alignment-review (done · →98k ←6.7k ◎73k) 5d │ │ │ │ │
│ └→ fig5-sweepga-fastga-frequency16 (done · →343k ←51k ◎18M §1.4M · ⌁50) 5d ✉6 ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ ├→ .flip-fig5-sweepga-fastga-frequency16 (done · →445k ←19k ◎378k) 5d │ │ │ │ │
│ │ └→ .evaluate-fig5-sweepga-fastga-frequency16 (done · →950k ←17k ◎873k) 5d │ │ │ │ │
│ ├→ audit-sweepga-paf-filter-identity-scoring (done · →82k ←6.1k ◎652k §332k · ⌁100) 5d ────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ ├→ .flip-audit-sweepga-paf-filter-identity-scoring (done · →312k ←20k ◎256k · ⌁50) 5d │ │ │ │ │
│ │ │ └→ .evaluate-audit-sweepga-paf-filter-identity-scoring (failed · ⌁50) 5d │ │ │ │ │
│ │ ├→ fig5-raw-fasta-sweepga-f16-chopped-panels (done · →352k ←43k ◎7.9M §702k · ⌁50) 4d ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ │ └→ .flip-fig5-raw-fasta-sweepga-f16-chopped-panels (done · →393k ←20k ◎324k) 4d │ │ │ │ │
│ │ │ └→ .evaluate-fig5-raw-fasta-sweepga-f16-chopped-panels (done · →262k ←10k ◎222k) 4d │ │ │ │ │
│ │ └→ ‖ fig5-sweepga-f16-validated-chop-sensitivity (open · §18k · ⌁50) 5d ✉1 ─────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ └→ .flip-fig5-sweepga-f16-validated-chop-sensitivity (open) 5d │ │ │ │ │
│ │ └→ .evaluate-fig5-sweepga-f16-validated-chop-sensitivity (open) 5d │ │ │ │ │
│ ├→ ‖ fig5-sweepga-f16-chop-1to1-sensitivity (open · §18k · ⌁50) 5d ───────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ └→ .flip-fig5-sweepga-f16-chop-1to1-sensitivity (open) 5d │ │ │ │ │
│ │ └→ .evaluate-fig5-sweepga-f16-chop-1to1-sensitivity (open) 5d │ │ │ │ │
│ ├→ ‖ fig5-sweepga-f16-chop-1to1-slurm-sensitivity (open · §18k · ⌁50) 5d ✓3 ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ └→ .flip-fig5-sweepga-f16-chop-1to1-slurm-sensitivity (open) 5d │ │ │ │ │
│ │ └→ .evaluate-fig5-sweepga-f16-chop-1to1-slurm-sensitivity (open) 5d │ │ │ │ │
│ └→ validate-pafchop-rs-paf-semantics (done · →110k ←31k ◎2.2M §748k · ⌁100) 5d ────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ ├→ .flip-validate-pafchop-rs-paf-semantics (done · →476k ←20k ◎413k · ⌁50) 5d │ │ │ │ │
│ │ └→ .evaluate-validate-pafchop-rs-paf-semantics (done · →222k ←12k ◎199k · ⌁50) 5d │ │ │ │ │
│ └→ redo-sweepga-paf-filter-identity-scoring-audit (done · →181k ←19k ◎4.1M §851k · ⌁100) 4d ─────────┼ ──┼ ──┼ ──┼ ──┼ ──
│ └→ .flip-redo-sweepga-paf-filter-identity-scoring-audit (done · →449k ←26k ◎375k · ⌁50) 4d │ │ │ │ │
│ └→ .evaluate-redo-sweepga-paf-filter-identity-scoring-audit (done · →340k ←18k ◎304k · ⌁50) 4d │ │ │ │ │
└→ fig5-whole-genome-wfmash-p95 (done · →481k ←59k ◎15M §861k · ⌁50) 6d ✉2 ────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
├→ .flip-fig5-whole-genome-wfmash-p95 (done · →260k ←22k ◎210k) 6d │ │ │ │ │
│ └→ .evaluate-fig5-whole-genome-wfmash-p95 (done · →560k ←18k ◎514k) 6d │ │ │ │ │
└→ fig5-whole-genome-wfmash-p95-evidence-review (done · →114k ←13k ◎1.5M §158k · ⌁50) 6d ✉1 ─────────────┼ ──┼ ──┼ ──┼ ──┼ ──
├→ .flip-fig5-whole-genome-wfmash-p95-evidence-review (done · →33k ←12k ◎20k) 6d │ │ │ │ │
│ └→ .evaluate-fig5-whole-genome-wfmash-p95-evidence-review (done · →89k ←7.5k ◎70k) 6d │ │ │ │ │
└→ fig5-whole-genome-wfmash-p95-updated-bin (done · →142k ←29k ◎7.9M §249k · ⌁50) 6d ──────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
├→ .flip-fig5-whole-genome-wfmash-p95-updated-bin (done · →112k ←8.0k ◎68k) 6d │ │ │ │ │
│ └→ .evaluate-fig5-whole-genome-wfmash-p95-updated-bin (done · →105k ←7.4k ◎69k) 6d │ │ │ │ │
└→ fig5-sweepga-fastga-frequency100 (done · →119k ←31k ◎5.0M §705k · ⌁50) 6d ────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
├→ .flip-fig5-sweepga-fastga-frequency100 (done · →316k ←27k ◎266k) 6d │ │ │ │ │
│ └→ .evaluate-fig5-sweepga-fastga-frequency100 (done · →329k ←16k ◎287k) 6d │ │ │ │ │
└→ fig5-whole-genome-minimap2-asm5-allchains (done · →285k ←49k ◎19M §601k · ⌁50) 5d ──────────────┼ ──┼ ──┼ ──┼ ──┼ ──
└→ .flip-fig5-whole-genome-minimap2-asm5-allchains (done · →429k ←23k ◎373k) 5d │ │ │ │ │
└→ .evaluate-fig5-whole-genome-minimap2-asm5-allchains (done · →121k ←11k ◎96k) 5d │ │ │ │ │
.assign-direct-sweepga-parental (done) 7d │ │ │ │ │
└→ direct-sweepga-parental (done · →261k ←31k ◎4.4M §455k) 7d ✉2 ──────────────────────────────────────────────────────┤ ──┤ │ │ │
├→ .flip-direct-sweepga-parental (done · →187k ←14k ◎134k) 7d │ │ │ │ │
│ └→ .evaluate-direct-sweepga-parental (done · →242k ←12k ◎195k) 7d │ │ │ │ │
└→ organize-direct-sweepga (done · →111k ←12k ◎1.6M §558k) 7d ───────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
└→ .flip-organize-direct-sweepga (done · →176k ←17k ◎149k) 7d │ │ │ │ │
└→ .evaluate-organize-direct-sweepga (done · →331k ←16k ◎277k) 7d │ │ │ │ │
.assign-organize-direct-sweepga (done · →16k ←1.4k ◎8.1k) 7d ──────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-research-par1-positive (done) 7d │ │ │ │ │
└→ research-par1-positive (done · →191k ←16k ◎1.5M §726k) 7d ──────────────────────────────────────────────────────────┼ ──┼ ──┤ │ │
└→ .flip-research-par1-positive (done · →627k ←19k ◎554k) 7d │ │ │ │ │
└→ .evaluate-research-par1-positive (done · →74k ←5.1k ◎52k) 7d │ │ │ │ │
.assign-fig5-direct-sweepga-1to1-schematic (done · →16k ←588 ◎12k · ⌁50) 7d ───────────────────────────────────────────┘ │ │ │ │
.assign-fig5-joint-parent-sweepga (done · →16k ←582 ◎8.1k · ⌁50) 7d ───────────────────────────────────────────────────────┘ │ │ │
.assign-fig5-whole-genome-joint-parent-sweepga (done · →17k ←501 ◎8.1k) 6d ────────────────────────────────────────────────────┤ │ │
.assign-fig5-whole-genome-sweepga-evidence-review (done · →17k ←1.1k ◎8.1k) 7d ────────────────────────────────────────────────┼ ──┘ │
.assign-fig5-whole-genome-sweepga-qa-closeout (done) 7d ───────────────────────────────────────────────────────────────────────┼ ──────┘
.assign-prereq-restore-readable (done · →16k ←424 ◎8.1k) 7d │
└→ prereq-restore-readable (done · →258k ←20k ◎6.9M §353k) 7d ─────────────────────────────────────────────────────────────────┘
└→ .flip-prereq-restore-readable (done · →112k ←16k ◎67k · ⌁5) 6d
└→ .evaluate-prereq-restore-readable (done · →198k ←11k ◎173k · ⌁5) 6d
.assign-fig5-whole-genome-wfmash-p95 (done) 6d ────────────────────────────────────────────────────────────────────────────────────────────
.assign-fig5-whole-genome-wfmash-p95-evidence-review (done · →17k ←554 ◎4.5k) 6d ──────────────────────────────────────────────────────────
.assign-fig5-whole-genome-sweepga-updated-bin (done) 6d ───────────────────────────────────────────────────────────────────────────────────
.assign-fig5-whole-genome-wfmash-p95-updated-bin (done · →17k ←515 ◎4.5k) 6d ──────────────────────────────────────────────────────────────
.assign-fig5-updated-binary-direct-alignment-review (done · →17k ←2.1k ◎5.5k) 5d ──────────────────────────────────────────────────────────
.assign-fig5-sweepga-fastga-frequency100 (done · →17k ←585 ◎12k) 6d ───────────────────────────────────────────────────────────────────────
.assign-fig5-whole-genome-minimap2-asm5-allchains (done · →17k ←583 ◎8.1k) 6d ─────────────────────────────────────────────────────────────
.assign-fig5-sweepga-fastga-frequency16 (done · →17k ←434 ◎4.5k) 6d ───────────────────────────────────────────────────────────────────────
.assign-fig5-minimap2-longrun-chop-sweep (done · →17k ←454 ◎5.5k) 5d ──────────────────────────────────────────────────────────────────────
.assign-fig5-minimap2-harvest-active-slurm (done · →16k ←357 ◎5.5k · ⌁50) 5d ──────────────────────────────────────────────────────────────
.assign-fig5-sweepga-f16-chop-1to1-sensitivity (done · →17k ←319 ◎8.6k · ⌁50) 5d ──────────────────────────────────────────────────────────
.assign-fig5-sweepga-f16-chop-1to1-slurm-sensitivity (done · →17k ←282 ◎5.5k · ⌁50) 5d ────────────────────────────────────────────────────
.assign-validate-pafchop-rs-paf-semantics (done · →17k ←578 ◎8.6k · ⌁100) 5d ──────────────────────────────────────────────────────────────
.assign-audit-sweepga-paf-filter-identity-scoring (done · ⌁100) 5d ────────────────────────────────────────────────────────────────────────
.assign-fig5-sweepga-f16-validated-chop-sensitivity (done · →17k ←588 ◎5.5k · ⌁50) 5d ─────────────────────────────────────────────────────
.assign-redo-sweepga-paf-filter-identity-scoring-audit (done · →17k ←1.4k ◎4.5k · ⌁100) 4d ────────────────────────────────────────────────
.assign-fig5-raw-fasta-sweepga-f16-chopped-panels (done · →17k ←585 ◎8.6k) 4d ─────────────────────────────────────────────────────────────
fig5-sweepga-f16-validated-chop-submit-slurm-shell (done · §54k · ⌁50) 4d
└→ .flip-fig5-sweepga-f16-validated-chop-submit-slurm-shell (done · →28k ←5.2k ◎21k) 4d
└→ .evaluate-fig5-sweepga-f16-validated-chop-submit-slurm-shell (done · →15k ←5.3k ◎8.6k) 4d
.assign-fig5-sweepga-f16-validated-chop-rerun-after-real-audit (done) 4d
└→ ‖ fig5-sweepga-f16-validated-chop-rerun-after-real-audit (open · ⌁50) 4d
└→ .flip-fig5-sweepga-f16-validated-chop-rerun-after-real-audit (open) 4d
└→ .evaluate-fig5-sweepga-f16-validated-chop-rerun-after-real-audit (open) 4d
.evaluate-fig5-whole-genome-sweepga-updated-bin (done · →181k ←10k ◎152k) 6d
.assign-clean-unbanded-fig5 (done) 7d
└→ clean-unbanded-fig5 (done · →262k ←17k ◎1.7M §416k) 7d
└→ .flip-clean-unbanded-fig5 (done · →239k ←16k ◎192k) 7d
└→ .evaluate-clean-unbanded-fig5 (done · →153k ←8.8k ◎139k) 7d
.assign-remove-fake-banding (done) 7d
└→ remove-fake-banding (done · →185k ←15k ◎1.9M §554k) 7d
└→ .flip-remove-fake-banding (done · →293k ←11k ◎241k) 7d
└→ .evaluate-remove-fake-banding (done · →241k ←11k ◎218k) 7d
.assign-fig5-synteny-event-manifest (done · →17k ←1.1k ◎8.1k · ⌁50) 7d
└→ fig5-synteny-event-manifest (done · →116k ←17k ◎2.1M §269k · ⌁50) 7d
├→ .flip-fig5-synteny-event-manifest (done · →38k ←15k ◎20k) 7d
│ └→ .evaluate-fig5-synteny-event-manifest (done · →182k ←16k ◎150k) 7d
├→ fig5-synteny-schematic-prototype (done · →87k ←18k ◎1.3M §526k · ⌁50) 7d ←───────────────┐
│ ├→ .flip-fig5-synteny-schematic-prototype (done · →154k ←13k ◎105k) 7d │
│ │ └→ .evaluate-fig5-synteny-schematic-prototype (done · →327k ←14k ◎279k) 7d │
│ └→ fig5-synteny-schematic-review-pack (done · →120k ←8.3k ◎1.2M §116k) 7d ✉2 ─────────────┼ ←─┐
│ └→ .flip-fig5-synteny-schematic-review-pack (done · →29k ←7.4k ◎16k · ⌁5) 7d │ │
│ └→ .evaluate-fig5-synteny-schematic-review-pack (done · →54k ←7.5k ◎46k · ⌁5) 7d │ │
└→ fix-stale-pan028-chr3q-compact-panel-label (done · →164k ←11k ◎2.1M §479k · ⌁50) 7d ─────┼ ──┼ ←─┐
└→ .flip-fix-stale-pan028-chr3q-compact-panel-label (done · →210k ←12k ◎181k) 7d │ │ │
└→ .evaluate-fix-stale-pan028-chr3q-compact-panel-label (done · →233k ←7.7k ◎193k) 7d │ │ │
.assign-fig5-synteny-schematic-prototype (done · →17k ←476 ◎8.1k · ⌁50) 7d ───────────────────┘ │ │
.assign-fix-stale-pan028-chr3q-compact-panel-label (done · →17k ←437 ◎8.1k · ⌁50) 7d ─────────────┼ ──┘
.assign-fig5-synteny-schematic-review-pack (done · →16k ←1.0k ◎8.1k) 7d ──────────────────────────┘
.assign-fig5-par1-phr-candidate-panels (done · →17k ←1.3k ◎8.1k · ⌁50) 7d
└→ fig5-par1-phr-candidate-panels (done · →165k ←23k ◎4.1M §431k · ⌁50) 7d
├→ .flip-fig5-par1-phr-candidate-panels (done · →43k ←8.8k ◎16k) 7d
│ └→ .evaluate-fig5-par1-phr-candidate-panels (done · →345k ←15k ◎310k) 7d
└→ fix-fig5-candidate-panel-coordinates (done · →99k ←16k ◎2.1M §558k · ⌁50) 7d ✉2 ←─┐
└→ .flip-fix-fig5-candidate-panel-coordinates (done · →158k ←18k ◎117k) 7d │
└→ .evaluate-fix-fig5-candidate-panel-coordinates (done · →360k ←22k ◎329k) 7d │
.assign-fix-fig5-candidate-panel-coordinates (done · ⌁50) 7d ──────────────────────────┘
.assign-fix-fig5-sweepga-redraw-coordinate-style (done · →17k ←389 ◎8.1k) 8d
└→ fix-fig5-sweepga-redraw-coordinate-style (done · →202k ←19k ◎2.6M §196k · ⌁50) 8d
└→ .flip-fix-fig5-sweepga-redraw-coordinate-style (done · →41k ←11k ◎9.0k) 8d
└→ .evaluate-fix-fig5-sweepga-redraw-coordinate-style (done · →120k ←6.2k ◎93k) 8d
.assign-fig5-sweepga-1to1-redraw (done · →17k ←585 ◎4.5k) 8d
└→ fig5-sweepga-1to1-redraw (done · →135k ←19k ◎2.8M §508k · ⌁50) 8d
└→ .flip-fig5-sweepga-1to1-redraw (done · →307k ←20k ◎231k) 8d
└→ .evaluate-fig5-sweepga-1to1-redraw (done · →155k ←8.1k ◎128k) 8d
.assign-manuscript-final-housekeeping (done · →17k ←323 ◎8.1k) 8d
└→ manuscript-final-housekeeping (done · →134k ←15k ◎3.2M §265k · ⌁50) 8d
└→ .flip-manuscript-final-housekeeping (done · →129k ←8.7k ◎97k) 8d
└→ .evaluate-manuscript-final-housekeeping (done · →101k ←9.2k ◎73k) 8d
.assign-pedigree-patch-tract (done · →16k ←1.6k ◎4.5k) 9d
└→ ‖ pedigree-patch-tract (done · §1.8M) 9d ✓8
├→ .flip-pedigree-patch-tract (done · →593k ←18k ◎482k) 9d
│ └→ .evaluate-pedigree-patch-tract (done · →1.1M ←18k ◎1.0M) 9d
└→ pedigree-untangle-multimap-tracts (done · →83k ←22k ◎2.0M §709k · ⌁50) 8d ←─────────┐
├→ .flip-pedigree-untangle-multimap-tracts (done · →357k ←16k ◎278k) 8d │
│ └→ .evaluate-pedigree-untangle-multimap-tracts (done · →315k ←21k ◎251k) 8d │
└→ pedigree-untangle-bedpe-paf-merge (done · →134k ←23k ◎3.8M §861k · ⌁50) 8d ✉13 ───┼ ←─┐
├→ .flip-pedigree-untangle-bedpe-paf-merge (done · →242k ←22k ◎181k) 8d │ │
│ └→ .evaluate-pedigree-untangle-bedpe-paf-merge (done · →561k ←17k ◎468k) 8d │ │
└→ fig5-maternal-native-untangle-diff (done · →123k ←23k ◎3.0M §749k · ⌁50) 8d ────┼ ──┼ ←─┐
└→ .flip-fig5-maternal-native-untangle-diff (done · →213k ←16k ◎158k) 8d │ │ │
└→ .evaluate-fig5-maternal-native-untangle-diff (done · →488k ←14k ◎394k) 8d │ │ │
.assign-pedigree-untangle-multimap-tracts (done · ⌁50) 8d ───────────────────────────────┘ │ │
.assign-pedigree-untangle-bedpe-paf-merge (done · →17k ←705 ◎4.5k · ⌁50) 8d ─────────────────┘ │
.assign-fig5-maternal-native-untangle-diff (done · →17k ←1.6k ◎8.1k · ⌁50) 8d ───────────────────┘
.assign-manuscript-nature-summary (done · →17k ←865 ◎8.1k) 9d
└→ manuscript-nature-summary (done · →151k ←10k ◎2.2M §537k) 9d
└→ .flip-manuscript-nature-summary (done · →73k ←9.4k ◎53k) 9d
└→ .evaluate-manuscript-nature-summary (done · →425k ←11k ◎359k) 9d
.assign-manuscript-fig4-flank-pedigree-presentation (done · →17k ←576 ◎4.5k) 9d
└→ manuscript-fig4-flank-pedigree-presentation (done · →200k ←15k ◎5.2M §417k) 9d
└→ .flip-manuscript-fig4-flank-pedigree-presentation (done · →33k ←12k ◎9.0k) 9d
└→ .evaluate-manuscript-fig4-flank-pedigree-presentation (done · →343k ←12k ◎277k) 9d
‖ manuscript-bouquet-dehedge (done) 9d
.assign-manuscript-revision-00-read (done) 10d
└→ manuscript-revision-00-read (done · →130k ←11k ◎1.1M §387k) 10d
├→ .flip-manuscript-revision-00-read (done · →34k ←12k ◎16k) 10d
│ └→ .evaluate-manuscript-revision-00-read (done · →329k ←12k ◎290k) 10d
└→ manuscript-revision-01-generate (done · →124k ←10k ◎1.0M §137k) 10d ✉2 ←───────────────────┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ─
├→ .flip-manuscript-revision-01-generate (done · →32k ←13k ◎9.0k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-01-generate (done · →84k ←8.0k ◎52k) 10d │ │ │ │ │ │ │ │ │ │ │
└→ manuscript-revision-02-operating (done · →33k ←3.6k ◎285k §426k) 10d ────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┤ ──┤ ──┼ ─
├→ .flip-manuscript-revision-02-operating (done · →138k ←13k ◎106k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-02-operating (done · →260k ←15k ◎226k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-a-fanin (done · →210k ←20k ◎2.9M §686k) 10d ───────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ ├→ .flip-manuscript-revision-a-fanin (done · →496k ←17k ◎420k) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ .evaluate-manuscript-revision-a-fanin (done · →144k ←11k ◎127k) 10d │ │ │ │ │ │ │ │ │ │ │
│ ├→ manuscript-revision-final-fanin (done · →82k ←11k ◎1.1M §111k) 10d ──────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ ├→ .flip-manuscript-revision-final-fanin (done · →32k ←8.8k ◎20k · ⌁5) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-manuscript-revision-final-fanin (done · →64k ←6.2k ◎46k · ⌁5) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ manuscript-revision-paper-patch (done · →199k ←17k ◎1.5M §433k) 10d ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ ├→ .flip-manuscript-revision-paper-patch (done · →175k ←12k ◎120k · ⌁5) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-manuscript-revision-paper-patch (done · →214k ←15k ◎186k · ⌁5) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ manuscript-revision-qa (done · →97k ←7.1k ◎717k §141k) 10d ──────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-manuscript-revision-qa (done · →29k ←8.0k ◎20k · ⌁5) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ .evaluate-manuscript-revision-qa (done · →81k ←7.3k ◎66k · ⌁5) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ manuscript-revision-g0 (done · →108k ←7.7k ◎1.1M §119k) 10d ─────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-g0 (done · →31k ←8.4k ◎24k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-g0 (done · →73k ←6.1k ◎64k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-a1 (done · →228k ←19k ◎3.0M §217k) 10d ────────────────────────────┼ ←─┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-a1 (done · →31k ←3.5k ◎20k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-a1 (done · →174k ←9.1k ◎135k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-a2 (done · →111k ←12k ◎766k §284k) 10d ────────────────────────────┼ ──┼ ←─┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-a2 (done · →30k ←12k ◎21k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-a2 (done · →234k ←8.3k ◎196k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-a3 (done · →220k ←11k ◎2.0M §131k) 10d ────────────────────────────┼ ──┼ ──┼ ←─┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-a3 (done · →32k ←6.7k ◎24k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-a3 (done · →66k ←9.9k ◎46k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-a4 (done · →94k ←5.9k ◎822k §261k) 10d ────────────────────────────┼ ──┼ ──┼ ──┼ ←─┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-a4 (done · →97k ←14k ◎82k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-a4 (done · →125k ←9.1k ◎89k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-a5 (done · →119k ←7.0k ◎891k §445k) 10d ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ←─┤ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-a5 (done · →250k ←19k ◎203k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-a5 (done · →167k ←8.2k ◎142k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-b0 (done · →231k ←16k ◎3.1M §360k) 10d ────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┤ │ │ │ │
│ ├→ .flip-manuscript-revision-b0 (done · →301k ←15k ◎247k) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ .evaluate-manuscript-revision-b0 (done · →39k ←6.0k ◎27k) 10d │ │ │ │ │ │ │ │ │ │ │
│ ├→ manuscript-revision-b1 (done · →101k ←8.3k ◎897k §286k) 10d ─────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┤ │ │ │
│ │ ├→ .flip-manuscript-revision-b1 (done · →31k ←9.2k ◎24k) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-manuscript-revision-b1 (done · →218k ←11k ◎182k) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ manuscript-revision-bf-fanin (done · →171k ←14k ◎2.0M §648k) 10d ──────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-manuscript-revision-bf-fanin (done · →492k ←18k ◎429k · ⌁5) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ .evaluate-manuscript-revision-bf-fanin (done · →113k ←7.5k ◎75k · ⌁5) 10d │ │ │ │ │ │ │ │ │ │ │
│ ├→ manuscript-revision-b4 (done · →126k ←12k ◎1.7M §163k) 10d ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┤ ──┼ ──┼ ─
│ │ └→ .flip-manuscript-revision-b4 (done · →33k ←9.5k ◎20k) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ .evaluate-manuscript-revision-b4 (done · →96k ←8.3k ◎81k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ manuscript-revision-b5 (done · →124k ←10k ◎2.1M §221k) 10d ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┤ ──┼ ─
│ └→ .flip-manuscript-revision-b5 (done · →31k ←14k ◎20k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-b5 (done · →151k ←8.0k ◎123k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-c0a (done · →139k ←15k ◎1.5M §565k) 10d ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┤ ─
│ ├→ .flip-manuscript-revision-c0a (done · →376k ←14k ◎262k) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ .evaluate-manuscript-revision-c0a (done · →165k ←9.9k ◎121k) 10d │ │ │ │ │ │ │ │ │ │ │
│ ├→ manuscript-revision-c1 (done · →104k ←9.7k ◎1.3M §200k) 10d ─────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ ├→ .flip-manuscript-revision-c1 (done · →31k ←9.4k ◎23k) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-manuscript-revision-c1 (done · →134k ←8.2k ◎115k) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ manuscript-revision-cd-fanin (done · →99k ←10.0k ◎1.2M §330k) 10d ─────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ │ └→ .flip-manuscript-revision-cd-fanin (done · →221k ←14k ◎178k · ⌁5) 10d │ │ │ │ │ │ │ │ │ │ │
│ │ └→ .evaluate-manuscript-revision-cd-fanin (done · →88k ←7.1k ◎76k · ⌁5) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ manuscript-revision-c3 (done · →140k ←8.4k ◎1.8M §172k) 10d ─────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-c3 (done · →30k ←9.1k ◎23k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-c3 (done · →106k ←9.6k ◎94k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-c0b (done · →212k ←23k ◎3.6M §1.1M) 10d ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←
│ └→ .flip-manuscript-revision-c0b (done · →848k ←13k ◎776k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-c0b (done · →209k ←13k ◎192k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-c0c (done · →202k ←16k ◎2.4M §290k) 10d ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-c0c (done · →36k ←11k ◎20k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-c0c (done · →233k ←10k ◎209k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-c2 (done · →118k ←10k ◎1.4M §200k) 10d ────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-c2 (done · →31k ←10.0k ◎24k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-c2 (done · →153k ←6.6k ◎126k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-e1 (done · →162k ←8.8k ◎1.9M §555k) 10d ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-e1 (done · →341k ←14k ◎274k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-e1 (done · →193k ←6.9k ◎168k) 10d │ │ │ │ │ │ │ │ │ │ │
├→ manuscript-revision-f1 (done · →149k ←8.2k ◎1.6M §84k) 10d ────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ .flip-manuscript-revision-f1 (done · →30k ←13k ◎20k) 10d │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-manuscript-revision-f1 (done · →34k ←6.7k ◎27k) 10d │ │ │ │ │ │ │ │ │ │ │
└→ manuscript-revision-f3 (done · →149k ←19k ◎3.1M §346k) 10d ────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
└→ .flip-manuscript-revision-f3 (done · →153k ←11k ◎112k) 10d │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-manuscript-revision-f3 (done · →171k ←11k ◎152k) 10d │ │ │ │ │ │ │ │ │ │ │
.assign-manuscript-revision-01-generate (done) 10d ─────────────────────────────────────────────┘ │ │ │ │ │ │ │ │ │ │
.assign-manuscript-revision-02-operating (done) 10d ────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-manuscript-revision-a1 (done) 10d ──────────────────────────────────────────────────────────┘ │ │ │ │ │ │ │ │ │
.assign-manuscript-revision-a2 (done) 10d ──────────────────────────────────────────────────────────────┘ │ │ │ │ │ │ │ │
.assign-manuscript-revision-a3 (done · →16k ←410 ◎8.1k) 10d ────────────────────────────────────────────────┘ │ │ │ │ │ │ │
.assign-manuscript-revision-a4 (done · →16k ←291 ◎8.1k) 10d ────────────────────────────────────────────────────┘ │ │ │ │ │ │
.assign-manuscript-revision-a5 (done) 10d ──────────────────────────────────────────────────────────────────────────┘ │ │ │ │ │
.assign-manuscript-revision-b0 (done) 10d ──────────────────────────────────────────────────────────────────────────────┘ │ │ │ │
.assign-manuscript-revision-b1 (done · →16k ←733 ◎12k) 10d ─────────────────────────────────────────────────────────────────┘ │ │ │
.assign-manuscript-revision-b4 (done · →16k ←580 ◎8.1k) 10d ────────────────────────────────────────────────────────────────────┘ │ │
.assign-manuscript-revision-b5 (done · →16k ←1.6k ◎8.1k) 10d ───────────────────────────────────────────────────────────────────────┘ │
.assign-manuscript-revision-c0a (done) 10d ─────────────────────────────────────────────────────────────────────────────────────────────┘
.assign-manuscript-revision-c0b (done) 10d ────────────────────────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-c0c (done) 10d ────────────────────────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-c1 (done · →16k ←440 ◎12k) 10d ────────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-c2 (done) 10d ─────────────────────────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-c3 (done · →16k ←1.4k ◎8.1k) 10d ──────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-e1 (done) 10d ─────────────────────────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-f1 (done) 10d ─────────────────────────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-f3 (done) 10d ─────────────────────────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-g0 (done) 10d ─────────────────────────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-a-fanin (done · →16k ←1.1k ◎8.1k) 10d ─────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-bf-fanin (done · →16k ←1.8k ◎12k) 10d ─────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-cd-fanin (done) 10d ───────────────────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-final-fanin (done) 10d ────────────────────────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-paper-patch (done · →16k ←1.0k ◎12k) 10d ──────────────────────────────────────────────────────────────────────
.assign-manuscript-revision-qa (done · →16k ←510 ◎8.1k) 10d ───────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v9-labels-superpop-stats-polish (done) 1mo
└→ review-zoom-v9-labels-superpop-stats-polish (done · →156k ←59k ◎11M §506k · ⌁100) 1mo
├→ .flip-review-zoom-v9-labels-superpop-stats-polish (done · →348k ←24k ◎302k) 1mo
│ └→ .evaluate-review-zoom-v9-labels-superpop-stats-polish (done · →127k ←7.3k ◎111k) 1mo
└→ review-zoom-v9-fanin-render (done · →520k ←33k ◎6.1M §156k · ⌁100) 1mo ✉4 ←───────────┐
└→ .flip-review-zoom-v9-fanin-render (done · →35k ←14k ◎22k) 1mo │
└→ .evaluate-review-zoom-v9-fanin-render (done · →86k ←5.7k ◎70k) 1mo │
.assign-review-zoom-v9-leiden-figure-slide (done) 1mo │
└→ review-zoom-v9-leiden-figure-slide (done · →215k ←18k ◎2.2M §261k · ⌁100) 1mo ──────────┤
└→ .flip-review-zoom-v9-leiden-figure-slide (done · →175k ←12k ◎144k) 1mo │
└→ .evaluate-review-zoom-v9-leiden-figure-slide (done · →70k ←4.4k ◎61k) 1mo │
.assign-review-zoom-v9-slide06a-q-axis-kbp (done) 1mo │
└→ review-zoom-v9-slide06a-q-axis-kbp (done · →256k ←36k ◎4.9M §752k · ⌁100) 1mo ──────────┤
└→ .flip-review-zoom-v9-slide06a-q-axis-kbp (done · →474k ←17k ◎401k) 1mo │
└→ .evaluate-review-zoom-v9-slide06a-q-axis-kbp (done · →248k ←12k ◎189k) 1mo │
.assign-review-zoom-v9-slide10m2-better-3d-viz (done) 1mo │
└→ review-zoom-v9-slide10m2-better-3d-viz (done · →771k ←42k ◎12M §510k · ⌁50) 1mo ────────┤
└→ .flip-review-zoom-v9-slide10m2-better-3d-viz (done · →114k ←21k ◎82k) 1mo │
└→ .evaluate-review-zoom-v9-slide10m2-better-3d-viz (done · →365k ←10k ◎301k) 1mo │
.assign-review-zoom-v9-fanin-render (done · →15k ←498 ◎11k) 1mo ───────────────────────────┤
.assign-review-zoom-v9-broom-jaccard-method-slides (done · →16k ←594 ◎10k) 1mo │
└→ review-zoom-v9-broom-jaccard-method-slides (done · →224k ←24k ◎5.2M §241k · ⌁100) 1mo ──┘
└→ .flip-review-zoom-v9-broom-jaccard-method-slides (done · →66k ←13k ◎55k) 1mo
└→ .evaluate-review-zoom-v9-broom-jaccard-method-slides (done · →135k ←11k ◎99k) 1mo
.assign-review-zoom-v5-copy-number-enrichment-figures (done) 1mo
└→ review-zoom-v5-copy-number-enrichment-figures (done · →367k ←50k ◎7.5M §464k · ⌁100) 1mo ←────────────────────┐
├→ .flip-review-zoom-v5-copy-number-enrichment-figures (done · →278k ←20k ◎242k) 1mo │
│ └→ .evaluate-review-zoom-v5-copy-number-enrichment-figures (done · →156k ←9.7k ◎88k) 1mo │
└→ review-zoom-v5-enrichment-fanin-render (done · →1.0M ←40k ◎11M §228k · ⌁100) 1mo ✉2 ────────────────────────┼ ←─┐
├→ .flip-review-zoom-v5-enrichment-fanin-render (done · →36k ←14k ◎21k) 1mo │ │
│ └→ .evaluate-review-zoom-v5-enrichment-fanin-render (done · →153k ←8.4k ◎90k) 1mo │ │
└→ review-zoom-v5-phr-jaccard-method-slide (done · →306k ←35k ◎8.0M §314k · ⌁50) 1mo ────────────────────────┼ ──┼ ←─┐
├→ .flip-review-zoom-v5-phr-jaccard-method-slide (done · →136k ←16k ◎106k) 1mo │ │ │
│ └→ .evaluate-review-zoom-v5-phr-jaccard-method-slide (done · →153k ←9.2k ◎72k) 1mo │ │ │
└→ review-zoom-v5-pggb-gfalook-2d-render (done · →220k ←46k ◎6.7M §229k) 1mo ──────────────────────────────┼ ──┼ ──┼ ←─┐
├→ .flip-review-zoom-v5-pggb-gfalook-2d-render (done · →98k ←16k ◎74k) 1mo │ │ │ │
│ └→ .evaluate-review-zoom-v5-pggb-gfalook-2d-render (done · →89k ←8.9k ◎70k) 1mo │ │ │ │
└→ review-zoom-v6-dipc-validation-slides (done · →470k ←55k ◎9.7M §386k · ⌁50) 1mo ──────────────────────┼ ──┼ ──┼ ──┼ ←─┐
├→ .flip-review-zoom-v6-dipc-validation-slides (done · →124k ←16k ◎88k) 1mo │ │ │ │ │
│ └→ .evaluate-review-zoom-v6-dipc-validation-slides (done · →217k ←11k ◎152k) 1mo │ │ │ │ │
└→ review-zoom-v6-pggb-graph-black (done · →312k ←35k ◎4.2M §215k) 1mo ────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ←─┐
├→ .flip-review-zoom-v6-pggb-graph-black (done · →58k ←12k ◎41k) 1mo │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v6-pggb-graph-black (done · →120k ←6.5k ◎101k) 1mo │ │ │ │ │ │
└→ review-zoom-v6-community-assignment-method-slide (done · →306k ←42k ◎7.5M §258k · ⌁50) 1mo ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
├→ .flip-review-zoom-v6-community-assignment-method-slide (done · →36k ←19k ◎21k) 1mo │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v6-community-assignment-method-slide (done · →194k ←8.6k ◎127k) 1mo │ │ │ │ │ │ │
├→ review-zoom-v7-gene-enrichment-report-backed (done · →166k ←35k ◎6.5M §296k · ⌁50) 1mo ─────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ ├→ .flip-review-zoom-v7-gene-enrichment-report-backed (done · →34k ←12k ◎21k) 1mo │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v7-gene-enrichment-report-backed (done · →239k ←11k ◎209k) 1mo │ │ │ │ │ │ │
│ └→ review-zoom-v7-fanin-render (done · →451k ←38k ◎6.5M §267k · ⌁50) 1mo ────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ ├→ .flip-review-zoom-v7-fanin-render (done · →239k ←13k ◎196k) 1mo │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v7-fanin-render (done · →15k ←711 ◎10k) 1mo │ │ │ │ │ │ │
│ ├→ review-zoom-v8-chm13-ucsc-example-selection (done · →570k ←40k ◎13M §389k · ⌁50) 1mo ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ │ ├→ .flip-review-zoom-v8-chm13-ucsc-example-selection (done · →200k ←20k ◎152k) 1mo │ │ │ │ │ │ │
│ │ │ └→ .evaluate-review-zoom-v8-chm13-ucsc-example-selection (done · →160k ←7.6k ◎124k) 1mo │ │ │ │ │ │ │
│ │ └→ review-zoom-v8-fanin-render (done · →767k ←43k ◎6.8M §330k · ⌁100) 1mo ───────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ │ └→ .flip-review-zoom-v8-fanin-render (done · →107k ←16k ◎73k) 1mo │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v8-fanin-render (done · →199k ←8.1k ◎117k) 1mo │ │ │ │ │ │ │
│ ├→ review-zoom-v8-hic-dipc-clarity-split (done · →785k ←66k ◎16M §595k · ⌁100) 1mo ────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ │ └→ .flip-review-zoom-v8-hic-dipc-clarity-split (done · →99k ←20k ◎74k) 1mo │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v8-hic-dipc-clarity-split (done · →462k ←14k ◎363k) 1mo │ │ │ │ │ │ │
│ ├→ review-zoom-v8-mds-superpop-community-polish (done · →1.0M ←44k ◎15M §560k · ⌁100) 1mo ─────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ │ └→ .flip-review-zoom-v8-mds-superpop-community-polish (done · →244k ←20k ◎182k) 1mo │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v8-mds-superpop-community-polish (done · →269k ←8.9k ◎183k) 1mo │ │ │ │ │ │ │
│ ├→ review-zoom-v8-slide06a-length-alternatives (done · →378k ←43k ◎5.5M §599k · ⌁100) 1mo ─────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ │ └→ .flip-review-zoom-v8-slide06a-length-alternatives (done · →418k ←23k ◎362k) 1mo │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v8-slide06a-length-alternatives (done · →150k ←8.4k ◎88k) 1mo │ │ │ │ │ │ │
│ └→ review-zoom-v8-typography-legend-cleanup (done · →1.1M ←63k ◎15M §349k · ⌁50) 1mo ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-v8-typography-legend-cleanup (done · →35k ←9.5k ◎20k) 1mo │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v8-typography-legend-cleanup (done · →296k ←9.2k ◎194k) 1mo │ │ │ │ │ │ │
├→ review-zoom-v7-hic-3d-plots (done · →359k ←32k ◎6.8M §359k · ⌁50) 1mo ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-v7-hic-3d-plots (done · →228k ←14k ◎200k) 1mo │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v7-hic-3d-plots (done · →108k ←8.8k ◎88k) 1mo │ │ │ │ │ │ │
├→ review-zoom-v7-hic-mapq0-method-slide (done · →287k ←35k ◎5.7M §645k · ⌁50) 1mo ────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-v7-hic-mapq0-method-slide (done · →181k ←11k ◎156k) 1mo │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v7-hic-mapq0-method-slide (done · →442k ←11k ◎398k) 1mo │ │ │ │ │ │ │
├→ review-zoom-v7-slide06a-length-histogram-restore (done · →228k ←26k ◎3.3M §446k · ⌁50) 1mo ─────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-v7-slide06a-length-histogram-restore (done · →281k ←19k ◎240k) 1mo │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v7-slide06a-length-histogram-restore (done · →135k ←11k ◎97k) 1mo │ │ │ │ │ │ │
├→ review-zoom-v7-slide08b-nearest-superpop-mds (done · →782k ←38k ◎7.9M §441k · ⌁50) 1mo ─────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-v7-slide08b-nearest-superpop-mds (done · →174k ←21k ◎141k) 1mo │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v7-slide08b-nearest-superpop-mds (done · →239k ←8.1k ◎129k) 1mo │ │ │ │ │ │ │
└→ review-zoom-v7-slide09-community-mds-layout (done · →379k ←33k ◎4.7M §568k · ⌁50) 1mo ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
└→ .flip-review-zoom-v7-slide09-community-mds-layout (done · →361k ←18k ◎322k) 1mo │ │ │ │ │ │ │
└→ .evaluate-review-zoom-v7-slide09-community-mds-layout (done · →180k ←9.4k ◎118k) 1mo │ │ │ │ │ │ │
.assign-review-zoom-v5-copy-number-enrichment-inventory (done) 1mo │ │ │ │ │ │ │
└→ review-zoom-v5-copy-number-enrichment-inventory (done · →248k ←35k ◎8.0M §703k · ⌁100) 1mo ───────────────────┘ │ │ │ │ │ │
├→ .flip-review-zoom-v5-copy-number-enrichment-inventory (done · →174k ←15k ◎131k) 1mo │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v5-copy-number-enrichment-inventory (done · →498k ←15k ◎429k) 1mo │ │ │ │ │ │
└→ review-zoom-v5-copy-number-enrichment-narrative (done · →156k ←24k ◎2.9M §267k · ⌁50) 1mo ──────────────────────┤ ──┼ ──┼ ──┼ ──┼ ──┼
└→ .flip-review-zoom-v5-copy-number-enrichment-narrative (done · →106k ←14k ◎80k) 1mo │ │ │ │ │ │
└→ .evaluate-review-zoom-v5-copy-number-enrichment-narrative (done · →121k ←10k ◎89k) 1mo │ │ │ │ │ │
.assign-review-zoom-v5-copy-number-enrichment-narrative (done · →16k ←410 ◎10k) 1mo ─────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-v5-enrichment-fanin-render (done · →16k ←343 ◎11k) 1mo ──────────────────────────────────────────┤ │ │ │ │ │
.assign-review-zoom-v5-07a-tree-community-heatmaps (done · →16k ←502 ◎11k) 1mo │ │ │ │ │ │
└→ review-zoom-v5-07a-tree-community-heatmaps (done · →321k ←56k ◎7.6M §739k · ⌁50) 1mo ✉2 ──────────────────────────┘ │ │ │ │ │
└→ .flip-review-zoom-v5-07a-tree-community-heatmaps (done · →473k ←23k ◎407k) 1mo │ │ │ │ │
└→ .evaluate-review-zoom-v5-07a-tree-community-heatmaps (done · →217k ←9.9k ◎144k) 1mo │ │ │ │ │
.assign-review-zoom-v5-phr-jaccard-method-slide (done) 1mo ──────────────────────────────────────────────────────────────┘ │ │ │ │
.assign-review-zoom-v5-pggb-gfalook-2d-render (done · →16k ←491 ◎11k) 1mo ───────────────────────────────────────────────────┘ │ │ │
.assign-review-zoom-v6-dipc-validation-slides (done · →17k ←579 ◎10k) 1mo ───────────────────────────────────────────────────────┘ │ │
.assign-review-zoom-v6-pggb-graph-black (done · →16k ←2.5k ◎10k) 1mo ────────────────────────────────────────────────────────────────┘ │
.assign-review-zoom-v6-community-assignment-method-slide (done) 1mo ─────────────────────────────────────────────────────────────────────┘
.assign-review-zoom-v7-gene-enrichment-report-backed (done) 1mo ───────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-hic-3d-plots (done) 1mo ────────────────────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-slide06a-length-histogram-restore (done) 1mo ───────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-slide08b-nearest-superpop-mds (done) 1mo ───────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-slide09-community-mds-layout (done) 1mo ────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-fanin-render (done) 1mo ────────────────────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v7-hic-mapq0-method-slide (done) 1mo ──────────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v8-chm13-ucsc-example-selection (done) 1mo ────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v8-hic-dipc-clarity-split (done) 1mo ──────────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v8-mds-superpop-community-polish (done · →16k ←2.1k ◎10k) 1mo ─────────────────────────────────────────────────────────
.assign-review-zoom-v8-slide06a-length-alternatives (done) 1mo ────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v8-typography-legend-cleanup (done) 1mo ───────────────────────────────────────────────────────────────────────────────
.assign-review-zoom-v8-fanin-render (done) 1mo ────────────────────────────────────────────────────────────────────────────────────────────
.assign-meiosis-prophase-fish-background-review-deck (done) 1mo
└→ meiosis-prophase-fish-background-review-deck (done · →577k ←57k ◎14M §382k · ⌁50) 1mo ↩5
└→ .flip-meiosis-prophase-fish-background-review-deck (done · →175k ←19k ◎144k) 1mo
└→ .evaluate-meiosis-prophase-fish-background-review-deck (done · →178k ←9.8k ◎152k) 1mo
.assign-chm13-phr-ucsc-browser-suite (done · →17k ←583 ◎10k) 1mo
└→ chm13-phr-ucsc-browser-suite (done · →316k ←47k ◎7.6M §718k · ⌁100) 1mo
└→ .flip-chm13-phr-ucsc-browser-suite (done · →340k ←21k ◎282k) 1mo
└→ .evaluate-chm13-phr-ucsc-browser-suite (done · →330k ←11k ◎288k) 1mo
.assign-review-zoom-git-provenance-audit (done) 1mo
└→ review-zoom-git-provenance-audit (done · →202k ←32k ◎7.3M §92k · ⌁50) 1mo ────────────────────────────────┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐ ──┐
├→ .flip-review-zoom-git-provenance-audit (done · →34k ←12k ◎21k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-git-provenance-audit (done · →41k ←5.5k ◎25k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-03b-erdos-renyi (done · →225k ←20k ◎2.4M §464k · ⌁50) 1mo ──────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ ├→ .flip-review-zoom-03b-erdos-renyi (done · →358k ←14k ◎312k) 1mo │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-03b-erdos-renyi (done · →84k ←8.7k ◎62k) 1mo │ │ │ │ │ │ │ │
│ └→ render-bog-annotated-zoom-v2-review-fanin (done · →140k ←48k ◎6.6M §360k · ⌁50) 1mo ──────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ ├→ .flip-render-bog-annotated-zoom-v2-review-fanin (done · →198k ←17k ◎154k) 1mo │ │ │ │ │ │ │ │
│ │ └→ .evaluate-render-bog-annotated-zoom-v2-review-fanin (done · →137k ←7.6k ◎72k) 1mo │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-gene-browser-inventory (done · →236k ←39k ◎8.8M §578k · ⌁50) 1mo ←───────────────────┤ │ │ │ │ │ │ │
│ │ ├→ .flip-review-zoom-v3-gene-browser-inventory (done · →401k ←21k ◎337k) 1mo │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-review-zoom-v3-gene-browser-inventory (done · →144k ←11k ◎120k) 1mo │ │ │ │ │ │ │ │
│ │ └→ review-zoom-v3-gene-browser-render-assets (done · →536k ←42k ◎7.2M §376k · ⌁50) 1mo ──────────────┼ ←─┤ │ │ │ │ │ │
│ │ ├→ .flip-review-zoom-v3-gene-browser-render-assets (done · →151k ←17k ◎117k) 1mo │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-review-zoom-v3-gene-browser-render-assets (done · →198k ←10k ◎138k) 1mo │ │ │ │ │ │ │ │
│ │ └→ render-bog-annotated-zoom-v3-correction-fanin (done · →158k ←45k ◎9.9M §396k · ⌁50) 1mo ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ │ ├→ .flip-render-bog-annotated-zoom-v3-correction-fanin (done · →255k ←16k ◎197k) 1mo │ │ │ │ │ │ │ │
│ │ │ └→ .evaluate-render-bog-annotated-zoom-v3-correction-fanin (done · →98k ←7.2k ◎61k) 1mo │ │ │ │ │ │ │ │
│ │ └→ review-zoom-v4-slide10a-xaxis-orientation-fix (done · →430k ←51k ◎6.6M §314k · ⌁100) 1mo ✉2 ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ │ └→ .flip-review-zoom-v4-slide10a-xaxis-orientation-fix (done · →142k ←18k ◎107k) 1mo │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v4-slide10a-xaxis-orientation-fix (done · →125k ←11k ◎63k) 1mo │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-human-3d-dotplot-correlation (done · →366k ←31k ◎4.9M §625k · ⌁50) 1mo ──────────────┼ ──┼ ←─┤ ──┼ ──┼ ──┼ ──┼ ──┼
│ │ └→ .flip-review-zoom-v3-human-3d-dotplot-correlation (done · →481k ←21k ◎393k) 1mo │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-human-3d-dotplot-correlation (done · →112k ←10k ◎83k) 1mo │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide06-violin-censor (done · →359k ←30k ◎4.4M §349k · ⌁50) 1mo ─────────────────────┼ ──┼ ──┼ ←─┤ ──┼ ──┼ ──┼ ──┼
│ │ └→ .flip-review-zoom-v3-slide06-violin-censor (done · →221k ←13k ◎167k) 1mo │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide06-violin-censor (done · →107k ←8.4k ◎81k) 1mo │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide07a-crisp-aligned (done · →287k ←34k ◎3.9M §507k · ⌁50) 1mo ────────────────────┼ ──┼ ──┼ ──┼ ←─┤ ──┼ ──┼ ──┼
│ │ └→ .flip-review-zoom-v3-slide07a-crisp-aligned (done · →362k ←17k ◎307k) 1mo │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide07a-crisp-aligned (done · →120k ←8.7k ◎78k) 1mo │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide07c-acrocentric-presence (done · →450k ←31k ◎5.2M §732k · ⌁50) 1mo ─────────────┼ ──┼ ──┼ ──┼ ──┼ ←─┤ ──┼ ──┼
│ │ └→ .flip-review-zoom-v3-slide07c-acrocentric-presence (done · →557k ←23k ◎495k) 1mo │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide07c-acrocentric-presence (done · →144k ←7.3k ◎76k) 1mo │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide08b-within-pop-pairwise (done · →316k ←36k ◎3.5M §682k · ⌁50) 1mo ──────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┤ ──┼
│ │ └→ .flip-review-zoom-v3-slide08b-within-pop-pairwise (done · →501k ←21k ◎438k) 1mo │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide08b-within-pop-pairwise (done · →134k ←8.8k ◎90k) 1mo │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide09-label-all-communities (done · →323k ←31k ◎4.5M §535k · ⌁50) 1mo ─────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┤
│ │ └→ .flip-review-zoom-v3-slide09-label-all-communities (done · →371k ←20k ◎328k) 1mo │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide09-label-all-communities (done · →135k ←9.1k ◎99k) 1mo │ │ │ │ │ │ │ │
│ ├→ review-zoom-v3-slide10a-axis-box-fix (done · →204k ←38k ◎7.5M §322k · ⌁50) 1mo ─────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ │ └→ .flip-review-zoom-v3-slide10a-axis-box-fix (done · →124k ←17k ◎100k) 1mo │ │ │ │ │ │ │ │
│ │ └→ .evaluate-review-zoom-v3-slide10a-axis-box-fix (done · →155k ←9.1k ◎117k) 1mo │ │ │ │ │ │ │ │
│ └→ review-zoom-v3-slide11-wb-labels (done · →266k ←26k ◎3.5M §350k · ⌁50) 1mo ─────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-v3-slide11-wb-labels (done · →201k ←12k ◎174k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-v3-slide11-wb-labels (done · →128k ←8.0k ◎86k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-04-hprcv2-karyogram (done · →133k ←22k ◎2.2M §175k · ⌁50) 1mo ──────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-04-hprcv2-karyogram (done · →107k ←11k ◎65k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-04-hprcv2-karyogram (done · →51k ←6.7k ◎43k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-06-length-redesign (done · →386k ←40k ◎5.4M §421k · ⌁50) 1mo ───────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-06-length-redesign (done · →153k ←23k ◎119k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-06-length-redesign (done · →217k ←12k ◎153k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-07a-heatmap-tree-pq (done · →376k ←42k ◎5.4M §398k · ⌁50) 1mo ──────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-07a-heatmap-tree-pq (done · →189k ←15k ◎146k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-07a-heatmap-tree-pq (done · →184k ←9.7k ◎135k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-07b-tree-complete-unrooted (done · →458k ←38k ◎6.5M §392k · ⌁50) 1mo ───────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-07b-tree-complete-unrooted (done · →240k ←14k ◎194k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-07b-tree-complete-unrooted (done · →129k ←7.8k ◎80k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-08b-superpop-dispersion (done · →372k ←41k ◎9.9M §710k · ⌁50) 1mo ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-08b-superpop-dispersion (done · →496k ←19k ◎433k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-08b-superpop-dispersion (done · →183k ←11k ◎136k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-09-mds-community-leading (done · →444k ←30k ◎6.1M §549k · ⌁50) 1mo ─────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-09-mds-community-leading (done · →319k ←17k ◎259k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-09-mds-community-leading (done · →204k ←9.5k ◎150k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-14-gene-background (done · →190k ←24k ◎3.7M §329k · ⌁50) 1mo ───────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-14-gene-background (done · →227k ←15k ◎188k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-14-gene-background (done · →79k ←7.9k ◎50k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-14-gene-enrichment-or4f (done · →683k ←39k ◎11M §524k · ⌁50) 1mo ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-14-gene-enrichment-or4f (done · →251k ←16k ◎197k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-14-gene-enrichment-or4f (done · →246k ←11k ◎182k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-density-methods-narrative (done · →242k ←22k ◎7.5M §560k · ⌁50) 1mo ────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-density-methods-narrative (done · →301k ←5.8k ◎236k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-density-methods-narrative (done · →244k ←8.6k ◎169k) 1mo │ │ │ │ │ │ │ │
├→ review-zoom-hic-figure-redesign (done · →374k ←39k ◎6.6M §373k · ⌁50) 1mo ──────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
│ └→ .flip-review-zoom-hic-figure-redesign (done · →101k ←15k ◎74k) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-review-zoom-hic-figure-redesign (done · →248k ←9.0k ◎191k) 1mo │ │ │ │ │ │ │ │
└→ review-zoom-hic-methods-glossary (done · →212k ←29k ◎6.2M §591k · ⌁50) 1mo ─────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
└→ .flip-review-zoom-hic-methods-glossary (done · →200k ←16k ◎172k) 1mo │ │ │ │ │ │ │ │
└→ .evaluate-review-zoom-hic-methods-glossary (done · →361k ←13k ◎316k) 1mo │ │ │ │ │ │ │ │
.assign-review-zoom-03b-erdos-renyi (done) 1mo ──────────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-04-hprcv2-karyogram (done) 1mo ──────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-06-length-redesign (done · →16k ←1.0k ◎10k) 1mo ─────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-07a-heatmap-tree-pq (done) 1mo ──────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-07b-tree-complete-unrooted (done) 1mo ───────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-08b-superpop-dispersion (done) 1mo ──────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-09-mds-community-leading (done) 1mo ─────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-14-gene-background (done) 1mo ───────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-14-gene-enrichment-or4f (done) 1mo ──────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-density-methods-narrative (done) 1mo ────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-hic-figure-redesign (done) 1mo ──────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-hic-methods-glossary (done) 1mo ─────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-render-bog-annotated-zoom-v2-review-fanin (done) 1mo ────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼
.assign-review-zoom-v3-gene-browser-inventory (done) 1mo ────────────────────────────────────────────────────┘ │ │ │ │ │ │ │
.assign-review-zoom-v3-gene-browser-render-assets (done) 1mo ────────────────────────────────────────────────────┘ │ │ │ │ │ │
.assign-review-zoom-v3-human-3d-dotplot-correlation (done) 1mo ──────────────────────────────────────────────────────┘ │ │ │ │ │
.assign-review-zoom-v3-slide06-violin-censor (done) 1mo ─────────────────────────────────────────────────────────────────┘ │ │ │ │
.assign-review-zoom-v3-slide07a-crisp-aligned (done) 1mo ────────────────────────────────────────────────────────────────────┘ │ │ │
.assign-review-zoom-v3-slide07c-acrocentric-presence (done) 1mo ─────────────────────────────────────────────────────────────────┘ │ │
.assign-review-zoom-v3-slide08b-within-pop-pairwise (done · →16k ←1.1k ◎10k) 1mo ────────────────────────────────────────────────────┘ │
.assign-review-zoom-v3-slide09-label-all-communities (done) 1mo ─────────────────────────────────────────────────────────────────────────┘
.assign-review-zoom-v3-slide10a-axis-box-fix (done · →16k ←854 ◎10k) 1mo ──────────────────────────────────────────────────────────────────
.assign-review-zoom-v3-slide11-wb-labels (done) 1mo ───────────────────────────────────────────────────────────────────────────────────────
.assign-render-bog-annotated-zoom-v3-correction-fanin (done · →16k ←3.6k ◎11k) 1mo ────────────────────────────────────────────────────────
.assign-review-zoom-v4-slide10a-xaxis-orientation-fix (done · →16k ←1.1k ◎10k) 1mo ────────────────────────────────────────────────────────
.assign-render-bog-annotated (done · →13k ←1.3k ◎35k) 1mo
└→ render-bog-annotated (done · →118k ←47k ◎6.3M §9.7k) 1mo
├→ .flip-render-bog-annotated (done · →18k ←5.9k ◎70k) 1mo
│ └→ .evaluate-render-bog-annotated (done · →12k ←2.5k ◎35k) 1mo
├→ .merge-render-bog-annotated (done · →39k ←8.3k ◎937k) 1mo
└→ render-bog-annotated-zoom (done · →824k ←45k ◎7.8M §361k · ⌁50) 1mo ✉6 ←─┐
└→ .flip-render-bog-annotated-zoom (done · →289k ←15k ◎245k) 1mo │
└→ .evaluate-render-bog-annotated-zoom (done · →34k ←5.8k ◎27k) 1mo │
.assign-render-bog-annotated-zoom (done · →16k ←817 ◎10k) 1mo ────────────────┘
.assign-fix-bog-review (done · →12k ←2.2k ◎35k) 1mo
└→ fix-bog-review (done · →82k ←34k ◎4.7M §10k) 1mo
├→ .flip-fix-bog-review (done · →27k ←7.8k ◎70k) 1mo
│ └→ .evaluate-fix-bog-review (failed) 1mo
└→ .merge-fix-bog-review (failed · →29k ←4.2k ◎388k) 1mo
update-abstract-rename (done · →34k ←8.2k ◎469k §4.2k) 1mo
├→ lit-review-topic-01 (done · →17k ←1.7k ◎103k §1.9k) 1mo ───────────┐
├→ lit-review-topic-02 (done · →11k ←1.3k ◎75k §2.5k) 1mo ────────────┤
├→ lit-review-topic-03 (done · →206k ←15k ◎2.2M §8.0k) 1mo ───────────┤
├→ lit-review-topic-04 (abandoned) 1mo │
├→ lit-review-topic-04-2 (done · →14k ←1.3k ◎75k §2.2k) 1mo ──────────┤
├→ lit-review-topic-05 (done · →24k ←1.6k ◎88k §2.7k) 1mo ────────────┤
├→ lit-review-topic-05-2 (done · →230k ←21k ◎4.3M §8.9k) 1mo ─────────┼ ←─┐
│ ├→ .flip-lit-review-topic-05-2 (done · →28k ←5.0k ◎70k) 1mo │ │
│ │ └→ .evaluate-lit-review-topic-05-2 (done · →12k ←3.8k ◎35k) 1mo │ │
│ └→ lit-review-v2 (done · →147k ←68k ◎3.8M §13k) 1mo ────────────────┼ ──┼ ←─┐
│ ├→ .flip-lit-review-v2 (done · →29k ←8.9k ◎70k) 1mo │ │ │
│ │ └→ .evaluate-lit-review-v2 (done · →11k ←3.0k ◎35k) 1mo │ │ │
│ └→ render-lit-review (done · →51k ←13k ◎2.5M §9.4k) 1mo ──────────┼ ──┼ ──┼ ←─┐
│ └→ .flip-render-lit-review (done · →18k ←4.5k ◎70k) 1mo │ │ │ │
│ └→ .evaluate-render-lit-review (done · →11k ←2.6k ◎35k) 1mo │ │ │ │
├→ lit-review-topic-06 (done · →10k ←1.3k ◎76k §2.9k) 1mo ────────────┤ │ │ │
├→ lit-review-topic-07 (done · →11k ←1.3k ◎74k §2.2k) 1mo ────────────┤ │ │ │
├→ lit-review-topic-07-2 (done · →83k ←19k ◎1.7M §8.4k) 1mo ──────────┼ ──┼ ──┤ ──┼ ←─┐
│ └→ .flip-lit-review-topic-07-2 (done · →26k ←5.0k ◎70k) 1mo │ │ │ │ │
│ └→ .evaluate-lit-review-topic-07-2 (done · →11k ←3.3k ◎35k) 1mo │ │ │ │ │
├→ lit-review-topic-08 (done · →16k ←2.0k ◎154k §2.3k) 1mo ───────────┤ │ │ │ │
├→ lit-review-topic-09 (done · →9.9k ←1.4k ◎76k §2.2k) 1mo ───────────┤ │ │ │ │
├→ lit-review-topic-10 (done · →18k ←2.2k ◎108k §1.4k) 1mo ───────────┤ │ │ │ │
├→ lit-review-topic-11 (abandoned) 1mo │ │ │ │ │
├→ lit-review-topic-11-2 (done · →218k ←22k ◎3.4M §7.2k) 1mo ─────────┤ │ │ │ │
├→ lit-review-topic-12 (done · →21k ←1.3k ◎88k §2.0k) 1mo ────────────┤ │ │ │ │
├→ lit-review-topic-13 (done · →14k ←1.7k ◎98k §2.3k) 1mo ────────────┤ │ │ │ │
├→ lit-review-topic-14 (done · →14k ←1.6k ◎103k §2.3k) 1mo ───────────┤ │ │ │ │
└→ lit-review-synthesis (done · →433k ←6.8k ◎13M) 1mo ←───────────────┘ ──┼ ──┤ │ │
.assign-lit-review-topic-05-2 (done) 1mo ─────────────────────────────────┘ │ │ │
.assign-lit-review-topic-07-2 (done) 1mo ─────────────────────────────────────┼ ──┼ ──┘
.assign-lit-review-v2 (done · →12k ←1.4k ◎35k) 1mo ───────────────────────────┘ │
.assign-render-lit-review (done · →13k ←2.2k ◎35k) 1mo ───────────────────────────┘
.assign-lit-review-synthesis (done) 1mo
.assign-lit-review-topic-04-2 (done) 1mo
.assign-lit-review-topic-01 (done) 1mo
.assign-lit-review-topic-12 (done) 1mo
.assign-lit-review-topic-02 (done) 1mo
.assign-lit-review-topic-13 (done) 1mo
.assign-lit-review-topic-10 (done) 1mo
.assign-lit-review-topic-05 (done) 1mo
.assign-lit-review-topic-06 (done) 1mo
.assign-lit-review-topic-14 (done) 1mo
.assign-lit-review-topic-08 (done) 1mo
.assign-lit-review-topic-07 (done) 1mo
.assign-lit-review-topic-09 (done) 1mo
.assign-lit-review-topic-03 (done) 1mo
.assign-lit-review-topic-11-2 (done) 1mo
.evaluate-lit-review-topic-04 (failed) 1mo
.evaluate-lit-review-topic-11 (failed) 1mo
.assign-update-abstract-rename (done) 1mo
.assign-build-bog-v2-3 (done · →13k ←2.0k ◎34k) 1mo
└→ build-bog-v2-3 (done · →442k ←29k ◎5.7M §11k) 1mo
└→ .flip-build-bog-v2-3 (done · →24k ←4.7k ◎68k) 1mo
└→ .evaluate-build-bog-v2-3 (done · →12k ←4.1k ◎34k) 1mo
.evaluate-lit-review-synthesis (abandoned) 1mo
.evaluate-lit-review-topic-11-2 (done · →33k ←7.2k ◎259k) 1mo
.evaluate-lit-review-topic-03 (done · →25k ←7.9k ◎247k) 1mo
.evaluate-lit-review-topic-02 (done · →10k ←2.5k ◎34k) 1mo
.evaluate-lit-review-topic-14 (done · →10k ←2.3k ◎34k) 1mo
.evaluate-lit-review-topic-13 (done · →10k ←2.3k ◎34k) 1mo
.evaluate-lit-review-topic-09 (done · →10k ←2.2k ◎34k) 1mo
.evaluate-lit-review-topic-01 (done · →10k ←1.9k ◎34k) 1mo
.evaluate-lit-review-topic-04-2 (done · →10k ←2.2k ◎34k) 1mo
.evaluate-lit-review-topic-05 (done · →10k ←2.7k ◎34k) 1mo
.evaluate-lit-review-topic-10 (done · →10k ←1.4k ◎34k) 1mo
.evaluate-lit-review-topic-12 (done · →10k ←2.0k ◎34k) 1mo
.evaluate-lit-review-topic-06 (done · →10k ←2.9k ◎34k) 1mo
.evaluate-lit-review-topic-07 (done · →10k ←2.1k ◎34k) 1mo
.evaluate-lit-review-topic-08 (done · →10k ←2.3k ◎34k) 1mo
.evaluate-update-abstract-rename (done · →13k ←4.2k ◎34k) 1mo
.assign-build-bog-v2-2 (done · →12k ←2.1k ◎34k) 1mo
└→ build-bog-v2-2 (done · →186k ←55k ◎15M §9.2k) 1mo
└→ .flip-build-bog-v2-2 (done · →18k ←4.3k ◎68k) 1mo
└→ .evaluate-build-bog-v2-2 (done · →11k ←2.7k ◎34k) 1mo
.coordinator-2 (abandoned) 2mo [turn 0]
├→ .archive-2 (abandoned) 2mo
├→ .compact-2 (abandoned) 2mo
└→ .flip-.coordinator-2 (open) 2mo
└→ .evaluate-.coordinator-2 (open) 2mo
.coordinator-3 (abandoned) 2mo [turn 0]
├→ .archive-3 (abandoned) 2mo
├→ .compact-3 (abandoned) 2mo
└→ .flip-.coordinator-3 (open) 2mo
└→ .evaluate-.coordinator-3 (open) 2mo
.assign-build-bog-brainstorm (done · →12k ←1.8k ◎34k) 1mo
└→ ‖ build-bog-brainstorm (abandoned · §1.8k) 1mo
└→ .flip-build-bog-brainstorm (abandoned) 1mo
└→ .evaluate-build-bog-brainstorm (abandoned) 1mo
‖ build-bog-v2 (abandoned) 1mo
.assign-bog-v2-slide-07 (done) 1mo
└→ bog-v2-slide-07 (done · →103k ←15k ◎2.1M §11k) 1mo ←─────────┐
├→ .flip-bog-v2-slide-07 (done · →21k ←6.8k ◎68k) 1mo │
│ └→ .evaluate-bog-v2-slide-07 (done · →16k ←3.6k ◎78k) 1mo │
└→ bog-v2-slides (done · →138k ←34k ◎2.1M §10k) 1mo ──────────┼ ←─┐
└→ .flip-bog-v2-slides (done · →27k ←5.7k ◎68k) 1mo │ │
└→ .evaluate-bog-v2-slides (done · →10k ←3.2k ◎34k) 1mo │ │
.assign-bog-v2-slides (done · →11k ←1.5k ◎34k) 1mo ─────────────┼ ──┤
.assign-nj-tree-from (done) 1mo │ │
└→ nj-tree-from (done · →110k ←32k ◎4.3M §8.7k) 1mo ────────────┘ │
└→ .flip-nj-tree-from (done · →23k ←5.3k ◎68k) 1mo │
└→ .evaluate-nj-tree-from (done · →10k ←3.4k ◎34k) 1mo │
.assign-bog-v2-slide-01 (done) 1mo │
└→ bog-v2-slide-01 (done · →50k ←8.6k ◎1.1M §12k) 1mo ──────────────┤
└→ .flip-bog-v2-slide-01 (done · →17k ←8.2k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-01 (done · →10k ←3.3k ◎34k) 1mo │
.assign-bog-v2-slide-02 (done · →11k ←2.2k ◎34k) 1mo │
└→ bog-v2-slide-02 (done · →51k ←8.7k ◎1.9M §11k) 1mo ──────────────┤
└→ .flip-bog-v2-slide-02 (done · →17k ←5.7k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-02 (done · →10k ←3.2k ◎34k) 1mo │
.assign-bog-v2-slide-03 (done · →11k ←1.5k ◎34k) 1mo │
└→ bog-v2-slide-03 (done · →55k ←13k ◎1.6M §12k) 1mo ───────────────┤
└→ .flip-bog-v2-slide-03 (done · →19k ←6.5k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-03 (done · →14k ←3.8k ◎78k) 1mo │
.assign-bog-v2-slide-04 (done · →11k ←1.8k ◎34k) 1mo │
└→ bog-v2-slide-04 (done · →45k ←9.2k ◎1.1M §10k) 1mo ──────────────┤
└→ .flip-bog-v2-slide-04 (done · →18k ←4.9k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-04 (done · →10k ←3.5k ◎34k) 1mo │
.assign-bog-v2-slide-05 (done · →11k ←1.7k ◎34k) 1mo │
└→ bog-v2-slide-05 (done · →48k ←13k ◎1.6M §12k) 1mo ───────────────┤
└→ .flip-bog-v2-slide-05 (done · →18k ←6.5k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-05 (done · →10k ←3.8k ◎34k) 1mo │
.assign-bog-v2-slide-06 (done) 1mo │
└→ bog-v2-slide-06 (done · →71k ←17k ◎2.4M §14k) 1mo ───────────────┤
└→ .flip-bog-v2-slide-06 (done · →21k ←8.4k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-06 (done · →39k ←5.5k ◎194k) 1mo │
.assign-bog-v2-slide-08 (done · →12k ←1.7k ◎34k) 1mo │
└→ bog-v2-slide-08 (done · →74k ←14k ◎2.9M §10k) 1mo ───────────────┤
└→ .flip-bog-v2-slide-08 (done · →20k ←4.9k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-08 (done · →10k ←3.5k ◎34k) 1mo │
.assign-bog-v2-slide-09 (done) 1mo │
└→ bog-v2-slide-09 (done · →82k ←22k ◎2.8M §9.8k) 1mo ──────────────┤
└→ .flip-bog-v2-slide-09 (done · →21k ←7.4k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-09 (done · →10k ←2.4k ◎34k) 1mo │
.assign-bog-v2-slide-10 (done · →11k ←2.2k ◎34k) 1mo │
└→ bog-v2-slide-10 (done · →63k ←8.2k ◎1.4M §11k) 1mo ──────────────┤
└→ .flip-bog-v2-slide-10 (done · →20k ←4.9k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-10 (done · →14k ←3.9k ◎78k) 1mo │
.assign-bog-v2-slide-11 (done · →11k ←1.3k ◎34k) 1mo │
└→ bog-v2-slide-11 (done · →43k ←8.5k ◎977k §10k) 1mo ──────────────┤
└→ .flip-bog-v2-slide-11 (done · →19k ←4.2k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-11 (done · →14k ←4.7k ◎78k) 1mo │
.assign-bog-v2-slide-12 (done) 1mo │
└→ bog-v2-slide-12 (done · →72k ←16k ◎2.6M §6.8k) 1mo ──────────────┤
└→ .flip-bog-v2-slide-12 (done · →16k ←4.3k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-12 (done · →10k ←2.5k ◎34k) 1mo │
.assign-bog-v2-slide-13 (done · →12k ←1.6k ◎34k) 1mo │
└→ bog-v2-slide-13 (done · →91k ←12k ◎1.6M §11k) 1mo ───────────────┤
└→ .flip-bog-v2-slide-13 (done · →22k ←6.7k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-13 (done · →10k ←3.1k ◎34k) 1mo │
.assign-bog-v2-slide-14 (done · →12k ←1.4k ◎34k) 1mo │
└→ bog-v2-slide-14 (done · →104k ←21k ◎4.4M §12k) 1mo ──────────────┤
└→ .flip-bog-v2-slide-14 (done · →23k ←6.5k ◎68k) 1mo │
└→ .evaluate-bog-v2-slide-14 (done · →17k ←3.7k ◎78k) 1mo │
.assign-bog-v2-slide-15 (done · →11k ←1.5k ◎34k) 1mo │
└→ bog-v2-slide-15 (done · →60k ←9.9k ◎1.3M §14k) 1mo ──────────────┘
└→ .flip-bog-v2-slide-15 (done · →20k ←7.7k ◎68k) 1mo
└→ .evaluate-bog-v2-slide-15 (done · →15k ←4.7k ◎78k) 1mo
.assign-improve-bog-slides (done) 1mo
└→ ‖ improve-bog-slides (abandoned) 1mo
└→ .flip-improve-bog-slides (abandoned) 1mo
└→ .evaluate-improve-bog-slides (abandoned) 1mo
.assign-read-end-to (done · →13k ←1.4k ◎34k) 1mo
└→ read-end-to (done · →234k ←35k ◎4.0M §15k) 1mo
└→ .flip-read-end-to (done · →28k ←6.6k ◎68k) 1mo
└→ .evaluate-read-end-to (done · →12k ←6.9k ◎34k) 1mo
.assign-audit-canonical-materials (done) 1mo
└→ audit-canonical-materials (done · →229k ←48k ◎10M §9.5k) 1mo ←─────────┐
└→ .flip-audit-canonical-materials (done · →27k ←6.3k ◎68k) 1mo │
└→ .evaluate-audit-canonical-materials (done · →11k ←3.2k ◎34k) 1mo │
.assign-park-off-target (done · →46k ←1.8k) 1mo │
└→ park-off-target (done · →172k ←51k ◎4.8M §8.5k) 1mo ───────────────────┘
└→ .flip-park-off-target (done · →21k ←3.2k ◎68k) 1mo
└→ .evaluate-park-off-target (done · →11k ←3.5k ◎34k) 1mo
‖ audit-existing-manuscript (abandoned) 1mo
.assign-render-manuscript-draft-4 (done · →12k ←1.7k ◎34k) 1mo
└→ render-manuscript-draft-4 (done · →77k ←19k ◎3.8M §7.8k) 1mo
└→ .flip-render-manuscript-draft-4 (done · →26k ←3.7k ◎68k) 1mo
└→ .evaluate-render-manuscript-draft-4 (done · →11k ←2.4k ◎34k) 1mo
.assign-render-manuscript-draft-3 (done · →45k ←1.4k) 1mo
└→ ‖ render-manuscript-draft-3 (abandoned · §1.4k) 1mo
└→ .flip-render-manuscript-draft-3 (abandoned) 1mo
└→ .evaluate-render-manuscript-draft-3 (abandoned) 1mo
.assign-render-manuscript-draft-2 (done · →45k ←1.8k) 1mo
└→ render-manuscript-draft-2 (failed · →192k ←3.4k ◎3.2M §1.8k) 1mo
└→ .flip-render-manuscript-draft-2 (failed) 1mo
.evaluate-render-manuscript-draft-2 (failed) 1mo
‖ render-manuscript-draft (abandoned) 1mo
.assign-survey-pipeline-section (done) 1mo
└→ survey-pipeline-section (done · →12k ←4.4k ◎1.9M §11k) 1mo
├→ .flip-survey-pipeline-section (done · →15k ←3.6k ◎68k) 1mo
│ └→ .evaluate-survey-pipeline-section (done · →21k ←7.0k ◎77k) 1mo
├→ .merge-survey-pipeline-section (done · →11k ←5.9k ◎1.1M) 1mo
└→ synthesize-paper-rough (done · →709 ←24 ◎263k §13k) 1mo ←─────────────────────────────┐
├→ .flip-synthesize-paper-rough (done · →27k ←7.3k ◎68k) 1mo │
│ └→ .evaluate-synthesize-paper-rough (done · →11k ←4.0k ◎34k) 1mo │
├→ figure-1-landscape-communities (done · →692 ←45 ◎139k §11k) 1mo ────────────────────┼ ←─┐
│ ├→ .flip-figure-1-landscape-communities (done · →23k ←7.3k ◎68k · ⌁5) 1mo │ │
│ │ └→ .evaluate-figure-1-landscape-communities (done · →10k ←3.2k ◎34k · ⌁5) 1mo │ │
│ └→ compile-manuscript-draft (done · →885 ←86 ◎134k §11k) 1mo ────────────────────────┼ ──┼ ←─┐
│ └→ .flip-compile-manuscript-draft (done · →26k ←4.5k ◎68k · ⌁5) 1mo │ │ │
│ └→ .evaluate-compile-manuscript-draft (done · →9.7k ←4.4k ◎34k · ⌁5) 1mo │ │ │
├→ figure-2-heterogeneity-population (done · →104k ←33k ◎5.0M §8.4k) 1mo ──────────────┼ ──┼ ──┤ ←─┐
│ └→ .flip-figure-2-heterogeneity-population (done · →25k ←6.2k ◎68k · ⌁5) 1mo │ │ │ │
│ └→ .evaluate-figure-2-heterogeneity-population (done · →10k ←2.2k ◎34k · ⌁5) 1mo │ │ │ │
├→ figure-3-3d-convergence (done · →132k ←52k ◎10M §8.7k) 1mo ─────────────────────────┼ ──┼ ──┤ ──┼ ←─┐
│ └→ .flip-figure-3-3d-convergence (done · →27k ←3.5k ◎68k · ⌁5) 1mo │ │ │ │ │
│ └→ .evaluate-figure-3-3d-convergence (done · →10k ←5.2k ◎34k · ⌁5) 1mo │ │ │ │ │
├→ figure-4-pedigree-mouse (done · →163k ←47k ◎10M §9.3k) 1mo ─────────────────────────┼ ──┼ ──┤ ──┼ ──┼ ←─┐
│ └→ .flip-figure-4-pedigree-mouse (done · →28k ←5.1k ◎68k · ⌁5) 1mo │ │ │ │ │ │
│ └→ .evaluate-figure-4-pedigree-mouse (done · →10k ←2.7k ◎34k · ⌁5) 1mo │ │ │ │ │ │
├→ figure-ed1-ed2-pipeline-seqlevel (done · →232 ←23 ◎170k §12k) 1mo ──────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-figure-ed1-ed2-pipeline-seqlevel (done · →19k ←9.5k ◎68k · ⌁5) 1mo │ │ │ │ │ │ │
│ └→ .evaluate-figure-ed1-ed2-pipeline-seqlevel (done · →9 ←2.5k ◎44k · ⌁5) 1mo │ │ │ │ │ │ │
├→ figure-ed3-ed4-annotation-genes (done · →560 ←61 ◎138k §12k) 1mo ───────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-figure-ed3-ed4-annotation-genes (done · →22k ←8.4k ◎68k · ⌁5) 1mo │ │ │ │ │ │ │ │
│ └→ .evaluate-figure-ed3-ed4-annotation-genes (done · →10k ←4.0k ◎34k · ⌁5) 1mo │ │ │ │ │ │ │ │
├→ figure-ed5-hic-robustness (done · →132k ←37k ◎5.6M §7.3k) 1mo ──────────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-figure-ed5-hic-robustness (done · →15k ←2.6k ◎68k · ⌁5) 1mo │ │ │ │ │ │ │ │ │
│ └→ .evaluate-figure-ed5-hic-robustness (done · →9.8k ←3.0k ◎34k · ⌁5) 1mo │ │ │ │ │ │ │ │ │
├→ figure-ed6-ed7-singlecell-mouse (done · →130k ←31k ◎5.2M §8.3k) 1mo ────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-figure-ed6-ed7-singlecell-mouse (done · →16k ←5.9k ◎68k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-figure-ed6-ed7-singlecell-mouse (done · →9.9k ←2.3k ◎34k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │
├→ figure-ed8-discussion-models (done · →170k ←56k ◎11M §11k) 1mo ─────────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-figure-ed8-discussion-models (done · →26k ←5.7k ◎68k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-figure-ed8-discussion-models (done · →10k ←3.2k ◎34k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │ │
├→ validate-acceptance-checklist (done · →83k ←21k ◎1.7M §15k) 1mo ────────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ .flip-validate-acceptance-checklist (done · →24k ←8.4k ◎68k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-validate-acceptance-checklist (done · →9.7k ←4.2k ◎34k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │ │ │
├→ validate-captions-references (done · →95k ←22k ◎2.2M §5.1k) 1mo ────────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─
│ └→ .flip-validate-captions-references (done · →27k ←5.1k ◎68k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-validate-captions-references (failed · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │ │ │
├→ validate-reproducibility-paths (done · →225k ←44k ◎7.3M §12k) 1mo ──────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ └→ .flip-validate-reproducibility-paths (done · →28k ←6.2k ◎68k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-validate-reproducibility-paths (done · →9.6k ←3.4k ◎34k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ validate-statistics-fdr-cis (done · →201k ←38k ◎7.2M §11k) 1mo ─────────────────────┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
└→ .flip-validate-statistics-fdr-cis (done · →28k ←5.1k ◎68k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-validate-statistics-fdr-cis (done · →9.7k ←5.8k ◎34k · ⌁5) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-annotation-section (done) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-annotation-section (done · →809 ←56 ◎62k §7.6k) 1mo ─────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
├→ .flip-survey-annotation-section (done · →15k ←3.3k ◎67k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-survey-annotation-section (done · →16k ←4.3k ◎76k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .merge-survey-annotation-section (done · →94k ←18k ◎2.7M) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-gene-enrichment (done · →11k ←2.1k ◎33k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-gene-enrichment (done · →334 ←32 ◎171k §11k) 1mo ────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-gene-enrichment (done · →15k ←3.8k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-gene-enrichment (done · →30k ←5.2k ◎490k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-heterogeneity-section (done · →11k ←2.0k ◎33k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-heterogeneity-section (done · →140 ←26 ◎112k §9.5k) 1mo ─────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
├→ .flip-survey-heterogeneity-section (done · →15k ←4.1k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-survey-heterogeneity-section (done · →20k ←3.3k ◎77k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .merge-survey-heterogeneity-section (done · →256k ←95k ◎58M) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-hi-c (done · →11k ←1.7k ◎33k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-hi-c (done · →106 ←9 ◎98k §12k) 1mo ─────────────────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
├→ .flip-survey-hi-c (done · →15k ←5.2k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-survey-hi-c (done · →20k ←5.1k ◎77k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .merge-survey-hi-c (done · →40k ←12k ◎1.4M) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-dip-c (done · →11k ←2.0k ◎33k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-dip-c (done · →223 ←92 ◎187k §11k) 1mo ──────────────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
├→ .flip-survey-dip-c (done · →15k ←3.8k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
│ └→ .evaluate-survey-dip-c (done · →18k ←4.9k ◎77k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .merge-survey-dip-c (done · →3.6k ←1.7k ◎340k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-cytogenetic-fish (done · →45k ←2.1k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-cytogenetic-fish (done · →114k ←18k ◎1.8M §11k) 1mo ─────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-cytogenetic-fish (done · →25k ←4.2k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-cytogenetic-fish (done · →20k ←4.7k ◎78k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-rpe-1-self (done · →11k ←1.7k ◎34k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-rpe-1-self (done · →69k ←18k ◎1.2M §8.0k) 1mo ───────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-rpe-1-self (done · →25k ←4.1k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-rpe-1-self (done · →9.4k ←2.2k ◎34k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-figure-inventory (done · →11k ←1.6k ◎34k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-figure-inventory (done · →79k ←22k ◎2.6M §9.5k) 1mo ─────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-figure-inventory (done · →21k ←4.7k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-figure-inventory (done · →9.7k ←3.1k ◎34k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-pedigree-recombination (done · →11k ←1.8k ◎34k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-pedigree-recombination (done · →117k ←24k ◎3.2M §12k) 1mo ───────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-pedigree-recombination (done · →26k ←7.4k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-pedigree-recombination (done · →9.6k ←2.6k ◎34k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-integrated-interpretation (done · →11k ←1.8k ◎34k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-integrated-interpretation (done · →69k ←17k ◎861k §12k) 1mo ─────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-integrated-interpretation (done · →26k ←4.8k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-integrated-interpretation (done · →21k ←5.7k ◎77k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-mouse-cross (done · →11k ←2.4k ◎34k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-mouse-cross (done · →70k ←22k ◎1.1M §10k) 1mo ───────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-mouse-cross (done · →28k ←5.7k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-mouse-cross (done · →9.4k ←2.0k ◎34k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-data-table (done) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-data-table (done · →73k ←14k ◎1.5M §7.4k) 1mo ───────────────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-data-table (done · →20k ←4.3k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-data-table (done · →15k ←3.1k ◎77k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-survey-limitations-summary (done) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ survey-limitations-summary (done · →75k ←24k ◎1.9M §10k) 1mo ───────────────────────────┤ │ │ │ │ │ │ │ │ │ │ │
└→ .flip-survey-limitations-summary (done · →26k ←7.0k ◎68k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
└→ .evaluate-survey-limitations-summary (done · →9.4k ←3.0k ◎34k) 1mo │ │ │ │ │ │ │ │ │ │ │ │
.assign-synthesize-paper-rough (done · →11k ←1.5k ◎34k) 1mo ───────────────────────────────┘ │ │ │ │ │ │ │ │ │ │ │
.assign-validate-reproducibility-paths (done · →11k ←2.1k ◎34k) 1mo ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-validate-captions-references (done) 1mo ───────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-figure-ed5-hic-robustness (done · →11k ←1.7k ◎34k) 1mo ────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘ │ │ │
.assign-figure-2-heterogeneity-population (done) 1mo ──────────────────────────────────────────┼ ──┼ ──┘ │ │ │ │ │ │ │
.assign-figure-1-landscape-communities (done) 1mo ─────────────────────────────────────────────┘ │ │ │ │ │ │ │ │
.assign-validate-acceptance-checklist (done · →11k ←2.2k ◎34k) 1mo ────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──────┼ ──┼ ──┘
.assign-figure-ed8-discussion-models (done · →11k ←1.8k ◎34k) 1mo ─────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──────┼ ──┘
.assign-validate-statistics-fdr-cis (done) 1mo ────────────────────────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──────┼ ──────────
.assign-figure-ed1-ed2-pipeline-seqlevel (done) 1mo ───────────────────────────────────────────────┼ ──────┼ ──┼ ──┘ │ │
.assign-figure-ed3-ed4-annotation-genes (done) 1mo ────────────────────────────────────────────────┼ ──────┼ ──┼ ──────┘ │
.assign-figure-3-3d-convergence (done) 1mo ────────────────────────────────────────────────────────┼ ──────┘ │ │
.assign-figure-ed6-ed7-singlecell-mouse (done) 1mo ────────────────────────────────────────────────┼ ──────────┼ ──────────────┘
.assign-figure-4-pedigree-mouse (done · →11k ←1.4k ◎34k) 1mo ──────────────────────────────────────┼ ──────────┘
.assign-compile-manuscript-draft (done · →11k ←1.7k ◎34k) 1mo ─────────────────────────────────────┘
.coordinator-1 (abandoned) 2mo [turn 54]
├→ .archive-1 (abandoned) 2mo
├→ .compact-1 (abandoned) 2mo
└→ .flip-.coordinator-1 (open) 2mo
└→ .evaluate-.coordinator-1 (open) 2mo
.coordinator-0 (abandoned) 2mo [turn 1] ←───────────┐
├→ .archive-0 (abandoned · §4.1k) 2mo ↺ (iter 1) │
├→ .compact-0 (abandoned) 2mo │
├→ .flip-.coordinator-0 (open) 2mo │
│ └→ .evaluate-.coordinator-0 (open) 2mo │
└→ .registry-refresh-0 (abandoned) 2mo ─────────────┘
└→ .flip-.registry-refresh-0 (open) 2mo
└→ .evaluate-.registry-refresh-0 (open) 2mo
.assign-write-feedback-document (done · →12k ←2.2k ◎26k) 1mo
└→ write-feedback-document (done · →17k ←3.6k ◎75k §10k) 1mo ✉1
.assign-merge-archive-into-graph (done · →12k ←1.2k ◎26k) 1mo
└→ merge-archive-into-graph (done · →145k ←50k ◎9.8M §12k) 1mo
└→ .flip-merge-archive-into-graph (done · →18k ←6.8k ◎51k) 1mo
└→ .evaluate-merge-archive-into-graph (done · →12k ←3.5k ◎26k) 1mo
.evaluate-.compact-2 (failed) 2mo
.evaluate-.archive-2 (failed) 2mo
.evaluate-.compact-0 (failed) 2mo
.evaluate-.archive-1 (failed) 2mo
.flip-.compact-2 (failed) 2mo
.flip-.archive-1 (failed) 2mo
.flip-.archive-2 (failed) 2mo
.evaluate-.compact-3 (failed) 2mo
.evaluate-.archive-3 (failed) 2mo
.evaluate-.compact-1 (failed) 2mo
.flip-.compact-0 (failed) 2mo
.flip-.archive-3 (failed) 2mo
.flip-.compact-3 (failed) 2mo
.flip-.compact-1 (failed) 2mo
.user-erikg-0 (abandoned) 2mo ✉56
└→ .flip-.user-erikg-0 (open) 2mo
└→ .evaluate-.user-erikg-0 (open) 2mo
.evolve-partition-run-20260402-235845 (done) 2mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-235845 (done · →32k ←5.4k ◎260k) 2mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-235845 (done · →63k ←24k ◎1.4M) 2mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-235845 (done · →52k ←9.3k ◎991k) 2mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-235845 (done · →40k ←8.0k ◎467k) 2mo ──────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-235845 (done · →77k ←10k ◎887k) 2mo ────────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-235845 (done · →55k ←8.7k ◎818k) 2mo ──┤
├→ .evolve-analyze-mutation-run-20260402-235845 (done · →45k ←6.5k ◎784k) 2mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-235845 (done · →43k ←7.7k ◎653k) 2mo ──────┤
└→ .evolve-synthesize-run-20260402-235845 (done · →51k ←27k ◎763k) 2mo ←─────────────────┘
└→ .evolve-apply-run-20260402-235845 (done · →46k ←7.8k ◎1.0M) 2mo
└→ .evolve-evaluate-run-20260402-235845 (done · →50k ←9.8k ◎748k) 2mo
.flip-reformat-gene-family (done · →12k ←3.3k ◎37k) 2mo
└→ .evaluate-reformat-gene-family (done · →14k ←3.1k ◎56k) 2mo
.assign-build-community-legend (done · →22k ←1.2k ◎7.8k) 2mo
└→ build-community-legend (done · →33k ←3.8k ◎264k §5.7k) 2mo
└→ reformat-gene-family (done · →63k ←12k ◎1.2M §11k) 2mo ←─┐
.assign-reformat-gene-family (done) 2mo ──────────────────────┘
.flip-build-community-legend (done · →20k ←2.7k ◎26k) 2mo
└→ .evaluate-build-community-legend (done · →4.0k ←1.8k ◎26k) 2mo
.flip-fix-executive-summary (done · →13k ←2.2k ◎37k) 2mo
└→ .evaluate-fix-executive-summary (done · →13k ←3.6k ◎92k) 2mo
.assign-fix-executive-summary (done · →23k ←1.1k ◎7.8k) 2mo
└→ fix-executive-summary (done · →37k ←8.5k ◎634k §7.0k) 2mo
.flip-executive-summary-combined (done · →22k ←2.6k ◎30k) 2mo
└→ .evaluate-executive-summary-combined (done · →27k ←5.9k ◎444k) 2mo
.assign-executive-summary-combined (done · →5.2k ←1.4k ◎26k) 2mo
└→ executive-summary-combined (done · →67k ←11k ◎1.6M §10k) 2mo
.flip-write-bug-report (done · →20k ←2.2k ◎26k) 2mo
└→ .evaluate-write-bug-report (done · →4.3k ←1.9k ◎26k) 2mo
.assign-write-bug-report (done · →23k ←1.0k ◎7.8k) 2mo
└→ write-bug-report (done · →17k ←3.0k ◎171k §5.2k) 2mo
.evolve-partition-run-20260402-150803 (done) 2mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-150803 (done · →38k ←7.7k ◎531k) 2mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-150803 (done · →61k ←17k ◎1.5M) 2mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-150803 (done · →37k ←7.4k ◎848k) 2mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-150803 (done · →31k ←11k ◎594k) 2mo ───────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-150803 (done · →29k ←10.0k ◎459k) 2mo ──────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-150803 (done · →42k ←10k ◎725k) 2mo ───┤
├→ .evolve-analyze-mutation-run-20260402-150803 (done · →27k ←6.5k ◎487k) 2mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-150803 (done · →16k ←5.6k ◎395k) 2mo ──────┤
└→ .evolve-synthesize-run-20260402-150803 (done · →46k ←24k ◎623k) 2mo ←─────────────────┘
└→ .evolve-apply-run-20260402-150803 (done · →37k ←6.2k ◎1.0M) 2mo
└→ .evolve-evaluate-run-20260402-150803 (done · →33k ←11k ◎447k) 2mo
.evolve-partition-run-20260402-150503 (done) 2mo
├→ .evolve-analyze-bizarre-ideation-run-20260402-150503 (done · →30k ←6.6k ◎370k) 2mo ───┐
├→ .evolve-analyze-component-mutation-run-20260402-150503 (done · →48k ←17k ◎1.3M) 2mo ──┤
├→ .evolve-analyze-coordinator-run-20260402-150503 (done · →49k ←9.7k ◎978k) 2mo ────────┤
├→ .evolve-analyze-crossover-run-20260402-150503 (done · →36k ←12k ◎685k) 2mo ───────────┤
├→ .evolve-analyze-gap-analysis-run-20260402-150503 (done · →34k ←12k ◎395k) 2mo ────────┤
├→ .evolve-analyze-motivation-tuning-run-20260402-150503 (done · →40k ←9.6k ◎871k) 2mo ──┤
├→ .evolve-analyze-mutation-run-20260402-150503 (done · →27k ←5.6k ◎522k) 2mo ───────────┤
├→ .evolve-analyze-randomisation-run-20260402-150503 (done · →38k ←6.4k ◎378k) 2mo ──────┤
└→ .evolve-synthesize-run-20260402-150503 (done · →47k ←25k ◎472k) 2mo ←─────────────────┘
└→ .evolve-apply-run-20260402-150503 (done · →38k ←8.7k ◎1.2M) 2mo
└→ .evolve-evaluate-run-20260402-150503 (done · →37k ←12k ◎742k) 2mo
.flip-bug-report-wg (done · →9.6k ←1.9k ◎37k) 2mo
└→ .evaluate-bug-report-wg (done · →5.0k ←2.2k ◎26k) 2mo ←─────┐
.assign-.verify-bug-report-wg (done) 2mo │
└→ .verify-bug-report-wg (done · →31k ←3.5k ◎297k §5.0k) 2mo ──┘
└→ .flip-.verify-bug-report-wg (done · →10k ←3.3k ◎37k) 2mo
└→ .evaluate-.verify-bug-report-wg (done · →5.1k ←1.7k ◎26k) 2mo
.assign-bug-report-wg (done · →3.1k ←1.3k ◎26k) 2mo
└→ bug-report-wg (done · →21k ←4.4k ◎565k §8.9k) 2mo
.flip-fact-check-validate (done · →17k ←2.9k ◎30k) 2mo
└→ .evaluate-fact-check-validate (done · →13k ←2.8k ◎56k) 2mo
.assign-fix-ensure-all (done · →2.8k ←1.1k ◎26k) 2mo
└→ fix-ensure-all (done · →42k ←17k ◎3.5M §5.3k) 2mo
└→ fact-check-validate (done · →58k ←16k ◎1.9M §6.8k) 2mo ←─┐
.assign-fact-check-validate (done · →3.2k ←1.1k ◎26k) 2mo ────┘
.flip-fix-ensure-all (done · →18k ←2.4k ◎37k) 2mo
└→ .evaluate-fix-ensure-all (done · →4.5k ←1.7k ◎26k) 2mo
.flip-urgent-validate-and (done · →11k ←2.6k ◎37k) 2mo
└→ .evaluate-urgent-validate-and (done · →5.0k ←2.6k ◎26k) 2mo
.assign-urgent-validate-and (done · →21k ←978 ◎7.8k) 2mo
└→ urgent-validate-and (done · →67k ←25k ◎3.7M §6.2k) 2mo ↩3
.flip-integrate-tubb8-literature (done · →15k ←2.5k ◎37k) 2mo
└→ .evaluate-integrate-tubb8-literature (done · →26k ←4.4k ◎505k) 2mo
.assign-deep-research-or4f (done) 2mo
└→ deep-research-or4f (done · →33k ←4.8k ◎488k §5.2k) 2mo
├→ multi-copy-or (done · →29k ←6.0k ◎490k §5.0k) 2mo ←────────────────────┐
│ └→ integrate-or4f-deep (done · →38k ←9.5k ◎675k §5.7k) 2mo ─────────────┼ ←─┐
├→ or4f-copy-number (done · →24k ←6.7k ◎574k §5.1k) 2mo ──────────────────┼ ──┤ ←─┐
├→ or4f-disease-associations (done · →19k ←4.8k ◎306k §5.3k) 2mo ─────────┼ ──┤ ──┼ ←─┐
├→ or4f-functional-characterization (done · →33k ←7.3k ◎854k §5.9k) 2mo ──┼ ──┤ ──┼ ──┼ ←─┐
├→ phr-or-biology (done · →42k ←9.2k ◎1.1M §5.6k) 2mo ────────────────────┼ ──┤ ──┼ ──┼ ──┼ ←─┐
├→ subtelomeric-or-gene (done · →22k ←5.4k ◎385k §5.1k) 2mo ──────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ←─┐
└→ synthesis-integrate-deep (done · →48k ←7.4k ◎690k §5.0k) 2mo ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
.assign-synthesis-integrate-deep (done) 2mo ────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤
.assign-deep-research-dux4 (done) 2mo │ │ │ │ │ │ │ │
└→ deep-research-dux4 (done · →39k ←12k ◎696k §5.3k) 2mo ───────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤
.assign-deep-research-tubb8 (done · →2.8k ←1.2k ◎26k) 2mo │ │ │ │ │ │ │ │
└→ deep-research-tubb8 (done · →47k ←9.1k ◎938k §6.1k) 2mo ─────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤
├→ tubb8-basic-biology (done · →17k ←4.3k ◎252k §5.9k) 2mo ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ └→ tubb8-research-synthesis (done · →64k ←18k ◎1.3M §5.9k) 2mo ─────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
├→ tubb8-copy-number (done · →57k ←17k ◎1.9M §7.0k) 2mo ──────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ←─┐
│ ├→ tubb8-assembly-comparison (done · →36k ←7.7k ◎959k §7.8k) 2mo ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ └→ integrate-tubb8-literature (done · →32k ←11k ◎951k §8.8k) 2mo ─────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ ├→ tubb8-copy-number-2 (done · →40k ←14k ◎1.4M §7.2k) 2mo ──────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ←─┐
│ ├→ tubb8-copy-number-3 (done · →40k ←14k ◎1.3M §5.7k) 2mo ──────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ←─┐
│ ├→ tubb8-functional-vs (done · →39k ←6.1k ◎666k §4.8k) 2mo ─────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ←─┐
│ └→ tubb8b-copy-number (done · →38k ←15k ◎772k §5.7k) 2mo ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ←
├→ tubb8-mutations-and (done · →26k ←7.0k ◎328k §4.8k) 2mo ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
├→ tubb8-t2t-assembly (done · →20k ←6.3k ◎293k §5.5k) 2mo ────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
├→ tubb8b-paralog-characterization (done · →30k ←9.2k ◎507k §7.6k) 2mo ───┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
└→ tubulin-subtelomeric-positioning (done · →29k ←9.3k ◎460k §5.4k) 2mo ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-deep-research-gtp (done) 2mo │ │ │ │ │ │ │ │ │ │ │ │ │ │ │ │
└→ deep-research-gtp (done · →44k ←11k ◎867k §5.8k) 2mo ────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘ │ │ │ │ │ │ │ │
.assign-or4f-copy-number (done) 2mo ────────────────────────────────────────┼ ──┼ ──┘ │ │ │ │ │ │ │ │ │ │ │ │
.assign-or4f-disease-associations (done) 2mo ───────────────────────────────┼ ──┼ ──────┘ │ │ │ │ │ │ │ │ │ │ │
.assign-phr-or-biology (done · →2.5k ←1.0k ◎26k) 2mo ───────────────────────┼ ──┼ ──────────┼ ──┘ │ │ │ │ │ │ │ │ │
.assign-subtelomeric-or-gene (done) 2mo ────────────────────────────────────┼ ──┼ ──────────┼ ──────┘ │ │ │ │ │ │ │ │
.assign-or4f-functional-characterization (done · →2.5k ←1.3k ◎26k) 2mo ─────┼ ──┼ ──────────┘ │ │ │ │ │ │ │ │
.assign-multi-copy-or (done) 2mo ───────────────────────────────────────────┘ │ │ │ │ │ │ │ │ │
.assign-tubulin-subtelomeric-positioning (done · →2.5k ←1.1k ◎26k) 2mo ─────────┼ ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-tubb8b-paralog-characterization (done · →9.4k ←1.3k ◎19k) 2mo ──────────┼ ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-tubb8-mutations-and (done) 2mo ─────────────────────────────────────────┼ ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-tubb8-t2t-assembly (done · →2.5k ←1.3k ◎26k) 2mo ───────────────────────┼ ──────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-tubb8-copy-number (done · →2.5k ←1.4k ◎26k) 2mo ────────────────────────┼ ──────────────────────────┼ ──┼ ──┘ │ │ │ │ │
.assign-tubb8-basic-biology (done · →2.4k ←841 ◎26k) 2mo ───────────────────────┼ ──────────────────────────┘ │ │ │ │ │ │
.assign-integrate-or4f-deep (done · →2.6k ←1.1k ◎26k) 2mo ──────────────────────┘ │ │ │ │ │ │
.assign-tubb8-research-synthesis (done) 2mo ────────────────────────────────────────────────────────────────────┘ │ │ │ │ │
.assign-tubb8-assembly-comparison (done) 2mo ───────────────────────────────────────────────────────────────────────────┘ │ │ │ │
.assign-tubb8-copy-number-2 (done) 2mo ─────────────────────────────────────────────────────────────────────────────────────┼ ──┘ │ │
.assign-tubb8b-copy-number (done) 2mo ──────────────────────────────────────────────────────────────────────────────────────┼ ──────┼ ──┼ ─
.assign-tubb8-functional-vs (done) 2mo ─────────────────────────────────────────────────────────────────────────────────────┼ ──────┼ ──┘
.assign-tubb8-copy-number-3 (done · →9.4k ←1.2k ◎19k) 2mo ──────────────────────────────────────────────────────────────────┼ ──────┘
.assign-integrate-tubb8-literature (done · →2.5k ←1.8k ◎26k) 2mo ───────────────────────────────────────────────────────────┘
.flip-tubb8-research-synthesis (done · →11k ←3.0k ◎73k) 2mo
└→ .evaluate-tubb8-research-synthesis (done · →11k ←2.8k ◎221k) 2mo
.flip-tubb8-copy-number-2 (done · →11k ←4.6k ◎37k) 2mo
└→ .evaluate-tubb8-copy-number-2 (done · →7.0k ←2.6k ◎56k) 2mo
.flip-tubb8-copy-number-3 (done · →16k ←2.6k ◎37k) 2mo
└→ .evaluate-tubb8-copy-number-3 (done · →16k ←1.8k ◎110k) 2mo
.flip-tubb8-assembly-comparison (done · →13k ←4.5k ◎37k) 2mo
└→ .evaluate-tubb8-assembly-comparison (done · →26k ←3.2k ◎285k) 2mo
.flip-tubb8b-copy-number (done · →13k ←3.5k ◎37k) 2mo
└→ .evaluate-tubb8b-copy-number (done · →8.1k ←2.2k ◎56k) 2mo
.flip-tubb8-functional-vs (done · →12k ←2.7k ◎37k) 2mo
└→ .evaluate-tubb8-functional-vs (done · →14k ←2.1k ◎55k) 2mo
.flip-integrate-or4f-deep (done · →23k ←2.6k ◎30k) 2mo
└→ .evaluate-integrate-or4f-deep (done · →18k ←2.0k ◎49k) 2mo
.flip-tubb8-copy-number (done · →16k ←2.8k ◎37k) 2mo
└→ .evaluate-tubb8-copy-number (done · →19k ←2.8k ◎49k) 2mo
.flip-tubb8b-paralog-characterization (done · →15k ←3.2k ◎37k) 2mo
└→ .evaluate-tubb8b-paralog-characterization (done · →11k ←3.0k ◎56k) 2mo
.flip-or4f-disease-associations (done · →12k ←3.0k ◎54k) 2mo
└→ .evaluate-or4f-disease-associations (done · →7.0k ←2.3k ◎55k) 2mo
.flip-synthesis-integrate-deep (done · →13k ←2.7k ◎37k) 2mo
└→ .evaluate-synthesis-integrate-deep (done · →8.6k ←2.3k ◎56k) 2mo
.flip-tubb8-t2t-assembly (done · →8.9k ←2.1k ◎37k) 2mo
└→ .evaluate-tubb8-t2t-assembly (done · →15k ←2.0k ◎48k) 2mo
.flip-deep-research-gtp (done · →15k ←2.7k ◎55k) 2mo
└→ .evaluate-deep-research-gtp (done · →9.9k ←3.0k ◎56k) 2mo
.flip-multi-copy-or (done · →9.0k ←2.8k ◎37k) 2mo
└→ .evaluate-multi-copy-or (done · →7.1k ←2.2k ◎55k) 2mo
.flip-tubb8-basic-biology (done · →11k ←3.1k ◎54k) 2mo
└→ .evaluate-tubb8-basic-biology (done · →5.9k ←1.8k ◎55k) 2mo
.flip-or4f-functional-characterization (done · →9.0k ←2.4k ◎37k) 2mo
└→ .evaluate-or4f-functional-characterization (done · →7.2k ←2.2k ◎56k) 2mo
.flip-phr-or-biology (done · →19k ←2.6k ◎30k) 2mo
└→ .evaluate-phr-or-biology (done · →7.4k ←2.0k ◎56k) 2mo
.flip-tubb8-mutations-and (done · →14k ←2.8k ◎54k) 2mo
└→ .evaluate-tubb8-mutations-and (done · →9.1k ←2.0k ◎55k) 2mo
.flip-tubulin-subtelomeric-positioning (done · →9.2k ←2.1k ◎37k) 2mo
└→ .evaluate-tubulin-subtelomeric-positioning (done · →11k ←2.2k ◎56k) 2mo
.flip-or4f-copy-number (done · →12k ←3.2k ◎55k) 2mo
└→ .evaluate-or4f-copy-number (done · →6.6k ←1.8k ◎56k) 2mo
.flip-subtelomeric-or-gene (done · →12k ←2.7k ◎54k) 2mo
└→ .evaluate-subtelomeric-or-gene (done · →7.0k ←2.4k ◎55k) 2mo
.flip-deep-research-tubb8 (done · →9.5k ←2.7k ◎37k) 2mo
└→ .evaluate-deep-research-tubb8 (done · →4.8k ←2.0k ◎26k) 2mo
.flip-deep-research-dux4 (done · →14k ←2.6k ◎37k) 2mo
└→ .evaluate-deep-research-dux4 (done · →8.8k ←2.7k ◎56k) 2mo
.flip-deep-research-or4f (done · →20k ←2.9k ◎26k) 2mo
└→ .evaluate-deep-research-or4f (done · →4.4k ←2.3k ◎26k) 2mo
.evaluate-validate-cross-check (abandoned) 2mo
.evaluate-update-revise-phr (abandoned) 2mo
.evaluate-update-revise-phr-2 (abandoned) 2mo
.assign-.verify-clean-commit-stage (done) 2mo
└→ .verify-clean-commit-stage (done · →26k ←3.1k ◎225k §4.3k) 2mo
├→ .evaluate-clean-commit-stage (abandoned) 2mo
└→ .flip-.verify-clean-commit-stage (done · →10k ←2.9k ◎37k) 2mo
└→ .evaluate-.verify-clean-commit-stage (done · →5.0k ←1.4k ◎26k) 2mo
.assign-clean-commit-stage (done) 2mo
└→ clean-commit-stage (done · →0 ←0 §5.7k) 2mo ←─────────────┐
.assign-review-extract-and (done) 2mo │
└→ review-extract-and (done · →31k ←8.8k ◎792k §14k) 2mo │
├→ update-revise-phr (done · →30k ←9.6k ◎276k §2.5k) 2mo ──┼ ←─┐
│ └→ validate-cross-check (done · →0 ←0 §3.6k) 2mo ────────┘ ──┼ ←─┐
└→ update-revise-phr-2 (done · →30k ←7.6k ◎426k §4.1k) 2mo ────┼ ──┤ ←─┐
.assign-update-revise-phr (done) 2mo ────────────────────────────┘ │ │
.assign-update-revise-phr-2 (done · →2.6k ←1.2k ◎37k) 2mo ───────────┼ ──┘
.assign-validate-cross-check (done) 2mo ─────────────────────────────┘
.flip-clean-commit-stage (done · →17k ←2.5k ◎30k) 2mo
.flip-validate-cross-check (done · →13k ←3.6k ◎55k) 2mo
.flip-update-revise-phr-2 (done · →20k ←2.8k ◎30k) 2mo
.flip-update-revise-phr (done · →15k ←2.4k ◎37k) 2mo
.flip-review-extract-and (done · →17k ←4.2k ◎41k) 2mo
└→ .evaluate-review-extract-and (abandoned · →26k ←3.2k ◎38k) 2mo ←─────┐
.assign-.verify-review-extract-and (done) 2mo │
└→ .verify-review-extract-and (abandoned · →25k ←6.6k ◎219k §18k) 2mo ──┘
└→ .flip-.verify-review-extract-and (abandoned · →21k ←2.8k ◎26k) 2mo
.evaluate-.verify-review-extract-and (abandoned · →59k ←15k ◎1.4M) 2mo
.flip-write-feedback-document (done · →16k ←4.0k ◎67k) 2mo
└→ .evaluate-write-feedback-document (done · →6.6k ←2.1k ◎37k) 2mo ←─────┐
.assign-.verify-write-feedback-document (done) 2mo │
└→ .verify-write-feedback-document (done · →17k ←2.0k ◎123k §7.6k) 2mo ──┘
└→ .flip-.verify-write-feedback-document (done · →10k ←4.4k ◎48k) 2mo
└→ .evaluate-.verify-write-feedback-document (done · →4.8k ←3.2k ◎37k) 2mo
.flip-integration-testing-copy (done · →25k ←3.2k ◎48k) 2mo
└→ .evaluate-integration-testing-copy (done · →4.6k ←2.7k ◎37k) 2mo
.assign-integration-testing-copy (done · →9.9k ←1.3k ◎30k) 2mo
└→ integration-testing-copy (done · →46k ←22k ◎1.9M §7.2k) 2mo
.flip-synthesize-parameter-mapping (done · →25k ←4.7k ◎41k) 2mo
└→ .evaluate-synthesize-parameter-mapping (done · →24k ←2.6k ◎71k) 2mo
.assign-implement-copy-number (done) 2mo
└→ implement-copy-number (done · →50k ←19k ◎1.6M §6.6k) 2mo ←─┐
.assign-research-copy-number (done · →3.3k ←1.9k ◎37k) 2mo │
└→ research-copy-number (done · →25k ←4.7k ◎347k §7.7k) 2mo ──┘
├→ check-tool-availability (done · →17k ←5.8k ◎411k §7.0k) 2mo ←─────────────────┐
│ └→ synthesize-findings-and (done · →47k ←8.9k ◎639k §7.4k) 2mo ────────────────┼ ←─┐
├→ investigate-copy-number (done · →67k ←22k ◎2.3M §8.7k) 2mo ───────────────────┼ ──┤ ←─┐
│ ├→ analyze-statistical-framework (done · →34k ←18k ◎568k §5.2k) 2mo ───────────┼ ──┼ ──┼ ←─┐
│ │ └→ synthesize-copy-number (done · →44k ←7.5k ◎600k §5.0k) 2mo ───────────────┼ ──┼ ──┼ ──┼ ←─┐
│ ├→ investigate-weighted-hypergeometric (done · →26k ←7.7k ◎394k §9.2k) 2mo ────┼ ──┼ ──┼ ──┼ ──┤ ←─┐
│ ├→ research-r-phyper (done · →48k ←19k ◎1.2M §11k) 2mo ────────────────────────┼ ──┼ ──┼ ──┼ ──┤ ──┼ ←─┐
│ │ ├→ benchmark-phyper-computational (done · →42k ←21k ◎1.4M §6.5k) 2mo ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ └→ synthesize-r-phyper (done · →0 ←0 §2.7k) 2mo ───────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ ├→ map-copy-number (done · →28k ←2.4k ◎315k §5.8k) 2mo ──────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ←─┐
│ │ │ ├→ edge-case-analysis (done · →0 ←0 §20k) 2mo ─────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ ├→ integration-testing-with (abandoned · →46k ←19k ◎1.6M §1.6k) 2mo ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ │ └→ synthesize-parameter-mapping (done · →41k ←17k ◎1.6M §8.5k) 2mo ──────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ ├→ mathematical-formulation-of (done · →17k ←3.4k ◎294k §2.7k) 2mo ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ │ ├→ mathematical-verification-of (done · →59k ←18k ◎2.4M §8.4k) 2mo ────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ←─
│ │ │ ├→ performance-benchmarking-parameter (done · →43k ←21k ◎1.5M §8.4k) 2mo ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──
│ │ │ ├→ robust-r-code (done · →23k ←3.3k ◎374k §4.6k) 2mo ──────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ │ └→ statistical-validation-framework (done · →23k ←3.0k ◎312k §4.7k) 2mo ───┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ ├→ research-r-alternatives (done · →36k ←17k ◎613k §6.5k) 2mo ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ ├→ validate-weighted-phyper (done · →71k ←41k ◎2.0M §37k) 2mo ───────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ │ └→ verify-weighted-phyper (done · →46k ←19k ◎1.1M §8.2k) 2mo ────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──
│ └→ survey-existing-copy (done · →28k ←6.3k ◎392k §6.7k) 2mo ───────────────────┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ investigate-gat-genomic (done · →30k ←7.9k ◎1.2M §6.5k) 2mo ──────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ investigate-great-rgreat (done · →22k ←5.1k ◎382k §5.7k) 2mo ─────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ investigate-permutation-based (done · →37k ←10.0k ◎722k §7.2k) 2mo ───────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
├→ investigate-weighted-gene (done · →30k ←6.6k ◎425k §5.2k) 2mo ────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
└→ literature-search-copy (done · →22k ←6.0k ◎424k §6.9k) 2mo ───────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-investigate-gat-genomic (done · →2.6k ←1.5k ◎37k) 2mo ─────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-literature-search-copy (done) 2mo ─────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-investigate-permutation-based (done) 2mo ──────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-check-tool-availability (done) 2mo ────────────────────────────────────────┘ │ │ │ │ │ │ │ │ │ │ │ │ │
.assign-investigate-copy-number (done · →2.5k ←1.3k ◎37k) 2mo ─────────────────────────┼ ──┘ │ │ │ │ │ │ │ │ │ │ │
.assign-investigate-great-rgreat (done) 2mo ───────────────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-investigate-weighted-gene (done) 2mo ──────────────────────────────────────────┼ ──────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-analyze-statistical-framework (done) 2mo ──────────────────────────────────────┼ ──────┘ │ │ │ │ │ │ │ │ │ │
.assign-investigate-weighted-hypergeometric (done) 2mo ────────────────────────────────┼ ──────────┼ ──┘ │ │ │ │ │ │ │ │
.assign-research-r-phyper (done · →2.4k ←2.3k ◎37k) 2mo ───────────────────────────────┼ ──────────┼ ──────┘ │ │ │ │ │ │ │
.assign-synthesize-findings-and (done) 2mo ────────────────────────────────────────────┘ │ │ │ │ │ │ │ │
.assign-survey-existing-copy (done) 2mo ───────────────────────────────────────────────────────────┼ ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-verify-weighted-phyper (done) 2mo ─────────────────────────────────────────────────────────┼ ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-validate-weighted-phyper (done) 2mo ───────────────────────────────────────────────────────┼ ──────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-map-copy-number (done · →9.5k ←1.9k ◎30k) 2mo ─────────────────────────────────────────────┼ ──────────┼ ──┼ ──┤ │ │ │ │
.assign-synthesize-copy-number (done) 2mo ─────────────────────────────────────────────────────────┘ │ │ │ │ │ │ │
.assign-research-r-alternatives (done) 2mo ────────────────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-benchmark-phyper-computational (done) 2mo ─────────────────────────────────────────────────────────────┘ │ │ │ │ │ │
.assign-statistical-validation-framework (done · →2.4k ←1.4k ◎37k) 2mo ────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-robust-r-code (done) 2mo ──────────────────────────────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──
.assign-mathematical-formulation-of (done) 2mo ────────────────────────────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┘
.assign-edge-case-analysis (done · →9.5k ←1.4k ◎30k) 2mo ──────────────────────────────────────────────────────────┼ ──┼ ──┘ │ │
.assign-fix-implement-copy (done · →2.5k ←1.5k ◎37k) 2mo │ │ │ │
└→ fix-implement-copy (done · →62k ←24k ◎2.1M §1.5k) 2mo ──────────────────────────────────────────────────────────┼ ──┘ │ │
.assign-synthesize-r-phyper (done) 2mo ────────────────────────────────────────────────────────────────────────────┘ │ │
.assign-mathematical-verification-of (done · →2.5k ←2.2k ◎37k) 2mo ────────────────────────────────────────────────────────────┼ ──┼ ──────
.assign-performance-benchmarking-parameter (done · →2.5k ←1.1k ◎37k) 2mo ──────────────────────────────────────────────────────┼ ──┼ ──────
.assign-integration-testing-with (done · →9.4k ←1.6k ◎30k) 2mo ────────────────────────────────────────────────────────────────┘ │
.assign-synthesize-parameter-mapping (done · →2.5k ←1.2k ◎37k) 2mo ────────────────────────────────────────────────────────────────┘
.evaluate-fix-implement-copy (abandoned) 2mo
.evaluate-statistical-validation-framework-3 (abandoned) 2mo
.evaluate-robust-r-code (abandoned) 2mo
.evaluate-synthesize-r-phyper (abandoned) 2mo
.assign-.verify-edge-case-analysis (done · →10k ←1.7k ◎30k) 2mo
└→ .verify-edge-case-analysis (done · →41k ←16k ◎931k §12k) 2mo
├→ .evaluate-edge-case-analysis (abandoned) 2mo
└→ .flip-.verify-edge-case-analysis (done · →15k ←7.3k ◎48k) 2mo
└→ .evaluate-.verify-edge-case-analysis (done · →4.6k ←3.0k ◎37k) 2mo
.evaluate-statistical-validation-framework (abandoned) 2mo
.evaluate-mathematical-formulation-of (abandoned) 2mo
.flip-integration-testing-with (abandoned) 2mo
└→ .evaluate-integration-testing-with (abandoned) 2mo
.flip-statistical-validation-framework-3 (done · →12k ←2.3k ◎48k) 2mo
.assign-fix-map-copy-2 (done · →9.6k ←2.4k ◎30k) 2mo
└→ fix-map-copy-2 (done · →56k ←17k ◎2.2M §13k) 2mo
├→ edge-case-analysis-2 (done · →17k ←1.5k ◎105k §11k) 2mo ←──────────────────────────┐
│ └→ synthesize-r-phyper-2 (done · →18k ←4.1k ◎392k §8.2k) 2mo ───────────────────────┼ ←─┐
│ ├→ final-recommendations-synthesis (done · →41k ←5.6k ◎861k §8.1k) 2mo ───────────┼ ──┼ ←─┐
│ │ ├→ decision-framework-recommendations (done · →28k ←7.1k ◎460k §10k) 2mo ───────┼ ──┼ ──┼ ←─┐
│ │ │ └→ integrate-final-recommendations (done · →44k ←12k ◎513k §7.9k) 2mo ────────┼ ──┼ ──┼ ──┼ ←─┐
│ │ ├→ implementation-roadmap-recommendations (done · →28k ←9.0k ◎473k §5.9k) 2mo ──┼ ──┼ ──┼ ──┼ ──┤ ←─┐
│ │ ├→ integration-and-final (done · →35k ←9.4k ◎765k §7.8k) 2mo ───────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
│ │ ├→ methodology-synthesis-recommendations (done · →37k ←6.8k ◎462k §7.7k) 2mo ───┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ←─┐
│ │ └→ use-case-scenarios (done · →34k ←7.4k ◎478k §8.8k) 2mo ──────────────────────┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ←─┐
│ ├→ implementation-best-practices (done · →41k ←9.7k ◎452k §7.3k) 2mo ─────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ←─┐
│ ├→ methodology-synthesis-documentation (done · →37k ←7.9k ◎583k §6.4k) 2mo ───────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ←─┐
│ └→ performance-and-accuracy (done · →41k ←7.1k ◎799k §6.5k) 2mo ──────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┤ ──┼ ──┼ ──┼ ──┼ ←─┐
├→ robust-r-code-2 (done · →56k ←31k ◎2.1M §10k) 2mo ─────────────────────────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←─┐
└→ statistical-validation-framework-2 (done · →17k ←3.1k ◎252k §15k) 2mo ─────────────┼ ──┤ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ←
├→ null-distribution-validation (done · →48k ←16k ◎2.1M §9.9k) 2mo ─────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
│ └→ statistical-validation-framework-3 (done · →66k ←25k ◎2.6M §3.3k) 2mo ─────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
├→ parameter-constraint-validation (done · →74k ←34k ◎4.0M §8.1k) 2mo ──────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
└→ type-i-error (done · →44k ←16k ◎1.5M §9.1k) 2mo ─────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-statistical-validation-framework-2 (done) 2mo ──────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─
.assign-robust-r-code-2 (done · →2.5k ←1.1k ◎37k) 2mo ──────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘
.assign-edge-case-analysis-2 (done · →2.5k ←1.7k ◎37k) 2mo ─────────────────────────────┘ │ │ │ │ │ │ │ │ │ │ │
.assign-null-distribution-validation (done) 2mo ────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─────
.assign-type-i-error (done · →2.5k ←1.1k ◎37k) 2mo ─────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─────
.assign-parameter-constraint-validation (done · →2.5k ←1.2k ◎37k) 2mo ──────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ─────
.assign-synthesize-r-phyper-2 (done · →2.6k ←1.6k ◎37k) 2mo ────────────────────────────────┘ │ │ │ │ │ │ │ │ │ │
.assign-performance-and-accuracy (done · →29k ←1.6k ◎7.8k) 2mo ─────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘
.assign-implementation-best-practices (done · →2.5k ←1.1k ◎37k) 2mo ────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┘ │
.assign-methodology-synthesis-documentation (done) 2mo ─────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──┼ ──────┘
.assign-final-recommendations-synthesis (done · →2.5k ←2.8k ◎37k) 2mo ──────────────────────────┘ │ │ │ │ │ │
.assign-decision-framework-recommendations (done · →2.6k ←2.1k ◎37k) 2mo ───────────────────────────┘ │ │ │ │ │
.assign-use-case-scenarios (done · →9.5k ←2.0k ◎30k) 2mo ───────────────────────────────────────────────┼ ──┼ ──┼ ──┼ ──┘
.assign-methodology-synthesis-recommendations (done) 2mo ───────────────────────────────────────────────┼ ──┼ ──┼ ──┘
.assign-implementation-roadmap-recommendations (done) 2mo ──────────────────────────────────────────────┼ ──┘ │
.assign-integration-and-final (done · →2.5k ←1.3k ◎37k) 2mo ────────────────────────────────────────────┼ ──────┘
.assign-statistical-validation-framework-3 (done · →2.5k ←959 ◎37k) 2mo ────────────────────────────────┼ ─────────────────────────────────
.assign-integrate-final-recommendations (done · →2.6k ←2.4k ◎37k) 2mo ──────────────────────────────────┘
.flip-mathematical-verification-of (done · →19k ←3.2k ◎48k) 2mo
└→ .evaluate-mathematical-verification-of (done · →18k ←2.9k ◎78k) 2mo
.flip-statistical-validation-framework (done · →26k ←3.3k ◎41k) 2mo
.flip-performance-benchmarking-parameter (done · →17k ←3.6k ◎48k) 2mo
└→ .evaluate-performance-benchmarking-parameter (done · →13k ←3.7k ◎78k) 2mo
.flip-synthesize-r-phyper (done · →25k ←2.7k ◎41k) 2mo
.flip-robust-r-code (done · →19k ←4.5k ◎48k) 2mo
.flip-mathematical-formulation-of (done · →21k ←2.7k ◎41k) 2mo
.flip-edge-case-analysis (done · →16k ←2.6k ◎41k) 2mo
.flip-fix-mark-fix (done · →9.2k ←3.9k ◎48k) 2mo
└→ .evaluate-fix-mark-fix (done · →3.9k ←2.2k ◎37k) 2mo
.assign-fix-mark-fix (done · →2.4k ←2.1k ◎37k) 2mo
└→ fix-mark-fix (done · →27k ←4.9k ◎619k §8.3k) 2mo
.flip-fix-implement-copy (abandoned) 2mo
.flip-map-copy-number (done · →16k ←2.0k ◎41k) 2mo
└→ .evaluate-map-copy-number (done · →11k ←1.8k ◎30k) 2mo ←─┐
.assign-.verify-map-copy-number (done) 2mo │
└→ .verify-map-copy-number (abandoned · →0 ←0 §8.4k) 2mo ───┘
└→ .flip-.verify-map-copy-number (open) 2mo
.evaluate-.verify-map-copy-number (abandoned · →39k ←8.2k ◎1.4M) 2mo
.flip-integrate-final-recommendations (done · →16k ←3.9k ◎41k) 2mo
└→ .evaluate-integrate-final-recommendations (done · →3.9k ←1.6k ◎37k) 2mo
.flip-implementation-roadmap-recommendations (done · →24k ←3.4k ◎59k) 2mo
└→ .evaluate-implementation-roadmap-recommendations (done · →3.8k ←2.4k ◎37k) 2mo
.flip-methodology-synthesis-recommendations (done · →15k ←5.1k ◎66k) 2mo
└→ .evaluate-methodology-synthesis-recommendations (done · →9.5k ←2.6k ◎77k) 2mo
.flip-integration-and-final (done · →9.3k ←3.5k ◎48k) 2mo
└→ .evaluate-integration-and-final (done · →17k ←2.9k ◎71k) 2mo
.flip-use-case-scenarios (done · →21k ←3.9k ◎59k) 2mo
└→ .evaluate-use-case-scenarios (done · →16k ←2.8k ◎71k) 2mo
.flip-decision-framework-recommendations (done · →21k ←5.8k ◎41k) 2mo
└→ .evaluate-decision-framework-recommendations (done · →16k ←2.5k ◎71k) 2mo
.flip-null-distribution-validation (done · →18k ←5.7k ◎48k) 2mo
└→ .evaluate-null-distribution-validation (done · →4.2k ←4.2k ◎37k) 2mo
.flip-type-i-error (done · →13k ←3.8k ◎107k) 2mo
└→ .evaluate-type-i-error (done · →4.4k ←4.2k ◎37k) 2mo
.flip-performance-and-accuracy (done · →20k ←2.4k ◎41k) 2mo
└→ .evaluate-performance-and-accuracy (done · →8.6k ←2.4k ◎78k) 2mo
.flip-parameter-constraint-validation (done · →19k ←3.4k ◎48k) 2mo
└→ .evaluate-parameter-constraint-validation (done · →4.1k ←3.6k ◎37k) 2mo
.flip-final-recommendations-synthesis (done · →9.3k ←3.2k ◎48k) 2mo
└→ .evaluate-final-recommendations-synthesis (done · →4.1k ←2.0k ◎37k) 2mo
.flip-methodology-synthesis-documentation (done · →22k ←3.9k ◎59k) 2mo
└→ .evaluate-methodology-synthesis-documentation (done · →19k ←2.4k ◎71k) 2mo
.flip-implementation-best-practices (done · →25k ←3.6k ◎59k) 2mo
└→ .evaluate-implementation-best-practices (done · →20k ←2.6k ◎71k) 2mo
.assign-fix-verify-fix (done · →2.4k ←954 ◎37k) 2mo
└→ fix-verify-fix (abandoned · §5.1k) 2mo
.flip-synthesize-r-phyper-2 (done · →9.2k ←3.9k ◎48k) 2mo
└→ .evaluate-synthesize-r-phyper-2 (done · →3.9k ←2.6k ◎37k) 2mo
.flip-statistical-validation-framework-2 (done · →9.5k ←2.9k ◎48k) 2mo
└→ .evaluate-statistical-validation-framework-2 (done · →12k ←5.5k ◎30k) 2mo ←──────┐
.assign-.verify-statistical-validation-framework-2 (done · →10k ←1.7k ◎30k) 2mo │
└→ .verify-statistical-validation-framework-2 (done · →48k ←7.1k ◎702k §9.7k) 2mo ──┘
└→ .flip-.verify-statistical-validation-framework-2 (done · →17k ←5.4k ◎41k) 2mo
└→ .evaluate-.verify-statistical-validation-framework-2 (done · →4.9k ←2.6k ◎37k) 2mo
.flip-fix-map-copy-2 (done · →17k ←2.5k ◎41k) 2mo
└→ .evaluate-fix-map-copy-2 (done · →5.6k ←2.2k ◎37k) 2mo ←─────┐
.assign-.verify-fix-map-copy-2 (done) 2mo │
└→ .verify-fix-map-copy-2 (done · →28k ←5.5k ◎641k §8.3k) 2mo ──┘
└→ .flip-.verify-fix-map-copy-2 (done · →17k ←5.9k ◎41k) 2mo
└→ .evaluate-.verify-fix-map-copy-2 (done · →4.9k ←2.3k ◎37k) 2mo
.flip-robust-r-code-2 (done · →20k ←2.8k ◎48k) 2mo
└→ .evaluate-robust-r-code-2 (done · →35k ←6.0k ◎1.3M) 2mo
.flip-validate-weighted-phyper (done · →9.3k ←2.8k ◎48k) 2mo
└→ .evaluate-validate-weighted-phyper (done · →4.5k ←3.5k ◎37k) 2mo ←───┐
.assign-.verify-validate-weighted-phyper (done) 2mo │
└→ .verify-validate-weighted-phyper (done · →73k ←29k ◎1.4M §17k) 2mo ──┘
└→ .flip-.verify-validate-weighted-phyper (done · →36k ←11k ◎491k) 2mo
└→ .evaluate-.verify-validate-weighted-phyper (done · →23k ←5.5k ◎480k) 2mo
.flip-edge-case-analysis-2 (done · →21k ←4.2k ◎119k) 2mo
└→ .evaluate-edge-case-analysis-2 (done · →22k ←2.4k ◎78k) 2mo
.flip-fix-verify-fix (done · →9.1k ←2.3k ◎48k) 2mo
└→ .evaluate-fix-verify-fix (done · →3.8k ←1.7k ◎37k) 2mo
.flip-map-copy-number-2 (done · →11k ←3.7k ◎66k) 2mo
└→ .evaluate-map-copy-number-2 (done · →4.1k ←3.0k ◎37k) 2mo
.assign-fix-map-copy (done · →9.5k ←1.6k ◎30k) 2mo
└→ fix-map-copy (done · →36k ←8.0k ◎1.1M §9.7k) 2mo ✉1
└→ map-copy-number-2 (done · →16k ←3.5k ◎288k §7.8k) 2mo ←─┐
.assign-map-copy-number-2 (done · →2.4k ←1.0k ◎37k) 2mo ─────┘
.flip-fix-resolve-fix (done · →9.4k ←3.7k ◎48k) 2mo
└→ .evaluate-fix-resolve-fix (done · →3.9k ←1.8k ◎37k) 2mo
.assign-fix-resolve-fix (done · →2.5k ←1.5k ◎37k) 2mo
└→ fix-resolve-fix (done · →28k ←5.7k ◎885k §6.9k) 2mo
.flip-fix-map-copy (done · →11k ←2.5k ◎48k) 2mo
└→ .evaluate-fix-map-copy (done · →4.2k ←5.6k ◎37k) 2mo
.flip-benchmark-phyper-computational (done · →26k ←3.9k ◎41k) 2mo
└→ .evaluate-benchmark-phyper-computational (done · →29k ←2.6k ◎71k) 2mo
.flip-verify-weighted-phyper (done · →27k ←5.5k ◎41k) 2mo
└→ .evaluate-verify-weighted-phyper (done · →11k ←2.7k ◎30k) 2mo
.flip-research-r-alternatives (done · →26k ←4.0k ◎41k) 2mo
└→ .evaluate-research-r-alternatives (done · →4.0k ←2.5k ◎37k) 2mo
.flip-synthesize-copy-number (done · →9.1k ←2.4k ◎48k) 2mo
└→ .evaluate-synthesize-copy-number (done · →16k ←2.6k ◎70k) 2mo
.flip-research-r-phyper (done · →17k ←3.6k ◎48k) 2mo
└→ .evaluate-research-r-phyper (done · →14k ←4.6k ◎78k) 2mo
.flip-analyze-statistical-framework (done · →9.2k ←2.3k ◎48k) 2mo
└→ .evaluate-analyze-statistical-framework (done · →22k ←2.8k ◎78k) 2mo
.flip-synthesize-findings-and (done · →11k ←4.6k ◎66k) 2mo
└→ .evaluate-synthesize-findings-and (done · →17k ←2.8k ◎71k) 2mo
.flip-investigate-weighted-hypergeometric (done · →23k ←6.5k ◎59k) 2mo
└→ .evaluate-investigate-weighted-hypergeometric (done · →3.6k ←2.7k ◎37k) 2mo
.flip-survey-existing-copy (done · →16k ←3.7k ◎41k) 2mo
└→ .evaluate-survey-existing-copy (done · →8.8k ←2.9k ◎78k) 2mo
.flip-investigate-copy-number (done · →9.4k ←3.8k ◎48k) 2mo
└→ .evaluate-investigate-copy-number (done · →20k ←3.6k ◎78k) 2mo
.flip-implement-copy-number (done · →9.6k ←3.4k ◎48k) 2mo
└→ .evaluate-implement-copy-number (done · →4.2k ←3.1k ◎37k) 2mo
.flip-investigate-gat-genomic (done · →18k ←3.0k ◎59k) 2mo
└→ .evaluate-investigate-gat-genomic (done · →13k ←2.0k ◎71k) 2mo
.flip-investigate-weighted-gene (done · →8.9k ←3.1k ◎48k) 2mo
└→ .evaluate-investigate-weighted-gene (done · →12k ←2.1k ◎74k) 2mo
.flip-check-tool-availability (done · →12k ←4.3k ◎65k) 2mo
└→ .evaluate-check-tool-availability (done · →13k ←2.6k ◎70k) 2mo
.flip-investigate-permutation-based (done · →17k ←4.7k ◎65k) 2mo
└→ .evaluate-investigate-permutation-based (done · →18k ←2.5k ◎71k) 2mo
.flip-literature-search-copy (done · →13k ←4.1k ◎65k) 2mo
└→ .evaluate-literature-search-copy (done · →7.1k ←2.8k ◎77k) 2mo
.flip-investigate-great-rgreat (done · →19k ←3.0k ◎58k) 2mo
└→ .evaluate-investigate-great-rgreat (done · →27k ←2.6k ◎39k) 2mo
.flip-research-copy-number (done · →9.7k ←3.0k ◎48k) 2mo
└→ .evaluate-research-copy-number (done · →12k ←2.8k ◎30k) 2mo
.flip-map-every-protein (done · →10k ←5.4k ◎48k) 2mo
└→ .evaluate-map-every-protein (done · →4.9k ←3.0k ◎37k) 2mo
.assign-map-every-protein (done · →32k ←1.0k ◎7.8k) 2mo
└→ map-every-protein (done · →51k ←12k ◎1.1M §9.5k) 2mo
.flip-write-paper-ready (done · →23k ←5.6k ◎58k) 2mo
└→ .evaluate-write-paper-ready (done · →11k ←3.8k ◎78k) 2mo
.assign-write-paper-ready (done · →3.9k ←2.5k ◎36k) 2mo
└→ write-paper-ready (done · →39k ←8.1k ◎477k §12k) 2mo
.flip-go-enrichment-on (done · →22k ←3.7k ◎47k) 2mo
└→ .evaluate-go-enrichment-on (done · →4.7k ←3.0k ◎36k) 2mo
.assign-go-enrichment-on (done · →32k ←1.1k ◎7.6k) 2mo
└→ go-enrichment-on (done · →58k ←13k ◎1.6M §7.9k) 2mo
.flip-detailed-mapping-enriched (done · →9.6k ←7.0k ◎47k) 2mo
└→ .evaluate-detailed-mapping-enriched (done · →23k ←3.4k ◎77k) 2mo
.assign-detailed-mapping-enriched (done · →3.1k ←1.4k ◎36k) 2mo
└→ detailed-mapping-enriched (done · →82k ←20k ◎2.7M §12k) 2mo
.flip-synthesis-phr-gene (done · →18k ←4.4k ◎58k) 2mo
└→ .evaluate-synthesis-phr-gene (done · →6.2k ←2.8k ◎76k) 2mo
.assign-research-snrnp-assembly (done) 2mo
└→ research-snrnp-assembly (done · →39k ←11k ◎1.0M §7.6k) 2mo
└→ synthesis-phr-gene (done · →22k ←5.8k ◎358k §7.3k) 2mo ←─────────┐
.assign-synthesis-phr-gene (done) 2mo ────────────────────────────────┤
.assign-research-olfactory-receptor (done · →4.0k ←2.1k ◎36k) 2mo │
└→ research-olfactory-receptor (done · →32k ←9.3k ◎910k §8.8k) 2mo ───┤
.assign-research-post-transcriptional (done) 2mo │
└→ research-post-transcriptional (done · →51k ←13k ◎1.7M §7.3k) 2mo ──┤
.assign-research-neuron-projection (done) 2mo │
└→ research-neuron-projection (done · →23k ←4.9k ◎566k §5.8k) 2mo ────┘
.flip-research-post-transcriptional (done · →13k ←4.4k ◎84k) 2mo
└→ .evaluate-research-post-transcriptional (done · →4.4k ←2.9k ◎36k) 2mo
.flip-research-olfactory-receptor (done · →12k ←3.3k ◎64k) 2mo
└→ .evaluate-research-olfactory-receptor (done · →7.2k ←3.4k ◎77k) 2mo
.flip-research-snrnp-assembly (done · →9.0k ←4.8k ◎47k) 2mo
└→ .evaluate-research-snrnp-assembly (done · →11k ←2.7k ◎30k) 2mo
.flip-research-neuron-projection (done · →16k ←3.9k ◎58k) 2mo
└→ .evaluate-research-neuron-projection (done · →4.8k ←1.8k ◎76k) 2mo
.flip-rerun-enrichment-excluding (done · →16k ←2.7k ◎41k) 2mo
└→ .evaluate-rerun-enrichment-excluding (done · →4.9k ←3.0k ◎36k) 2mo
.assign-rerun-enrichment-excluding (done · →4.3k ←1.2k ◎36k) 2mo
└→ rerun-enrichment-excluding (done · →42k ←15k ◎1.5M §7.0k) 2mo
.flip-report-show-enrichment (done · →8.4k ←3.0k ◎47k) 2mo
└→ .evaluate-report-show-enrichment (done · →4.0k ←2.7k ◎36k) 2mo
.assign-report-show-enrichment (done · →3.8k ←1.2k ◎36k) 2mo
└→ report-show-enrichment (done · →19k ←4.5k ◎337k §6.9k) 2mo
.flip-step-5-reconcile-with (done · →15k ←4.0k ◎41k) 2mo
└→ .evaluate-step-5-reconcile-with (done · →7.0k ←2.8k ◎76k) 2mo
.assign-research-inventory-files (done · →10k ←1.3k ◎30k) 2mo
└→ research-inventory-files (done · →28k ←6.6k ◎729k §7.3k) 2mo
└→ step-1-extract-chm13 (done · →17k ←3.6k ◎439k §7.1k) 2mo ←──────────┐
└→ step-2-intersect-genes (done · →25k ←6.5k ◎1.0M §5.6k) 2mo ───────┼ ←─┐
└→ step-3-run-go (done · →34k ←14k ◎1.8M §5.7k) 2mo ───────────────┼ ──┼ ←─┐
└→ step-4-compare-phr (done · →33k ←12k ◎1.2M §5.6k) 2mo ────────┼ ──┼ ──┼ ←─┐
└→ step-5-reconcile-with (done · →27k ←5.6k ◎463k §6.8k) 2mo ──┼ ──┼ ──┼ ──┼ ←─┐
.assign-step-1-extract-chm13 (done) 2mo ─────────────────────────────────┘ │ │ │ │
.assign-step-2-intersect-genes (done) 2mo ───────────────────────────────────┘ │ │ │
.assign-step-3-run-go (done) 2mo ────────────────────────────────────────────────┘ │ │
.assign-step-4-compare-phr (done) 2mo ───────────────────────────────────────────────┘ │
.assign-step-5-reconcile-with (done) 2mo ────────────────────────────────────────────────┘
.flip-step-4-compare-phr (done · →8.6k ←3.4k ◎47k) 2mo
└→ .evaluate-step-4-compare-phr (done · →4.2k ←2.1k ◎36k) 2mo
.flip-step-3-run-go (done · →14k ←3.2k ◎47k) 2mo
└→ .evaluate-step-3-run-go (done · →11k ←2.4k ◎30k) 2mo
.flip-step-2-intersect-genes (done · →24k ←3.1k ◎47k) 2mo
└→ .evaluate-step-2-intersect-genes (done · →10k ←2.5k ◎30k) 2mo
.flip-step-1-extract-chm13 (done · →8.3k ←1.9k ◎47k) 2mo
└→ .evaluate-step-1-extract-chm13 (done · →11k ←2.3k ◎30k) 2mo ←──────┐
.assign-.verify-step-1-extract-chm13 (done) 2mo │
└→ .verify-step-1-extract-chm13 (done · →32k ←2.8k ◎244k §5.7k) 2mo ──┘
└→ .flip-.verify-step-1-extract-chm13 (done · →9.0k ←3.9k ◎47k) 2mo
└→ .evaluate-.verify-step-1-extract-chm13 (done · →4.6k ←1.7k ◎36k) 2mo
.flip-research-inventory-files (done · →17k ←3.1k ◎58k) 2mo
└→ .evaluate-research-inventory-files (done · →10k ←2.8k ◎50k) 2mo
.flip-find-the-last (done · →10k ←1.6k ◎47k) 2mo
└→ .evaluate-find-the-last (done · →6.1k ←1.5k ◎36k) 2mo
.assign-find-the-last (done · →3.7k ←1.8k ◎36k) 2mo
└→ find-the-last (done · →24k ←4.1k ◎178k §4.9k) 2mo
.flip-.archive-0 (done · →14k ←1.6k ◎41k) 2mo
└→ .evaluate-.archive-0 (done · →3.2k ←2.5k ◎36k) 2mo