bog-v2-slide-15 — workgraph

Metadata

Status	done
Assigned	`agent-773`
Agent identity	`f51439356729d112a6c404803d88015d5b44832c6c584c62b96732b63c2b0c7e`
Created	2026-05-06T00:34:52.222880395+00:00
Started	2026-05-06T00:43:32.554681209+00:00
Completed	2026-05-06T00:46:49.922120300+00:00
Tags	`bog-slide`, `bog-this-week`, `eval-scheduled`
Eval score	0.92
└ blocking impact	0.95
└ completeness	0.95
└ constraint fidelity	0.70
└ coordination overhead	0.95
└ correctness	0.95
└ downstream usability	0.92
└ efficiency	0.85
└ intent fidelity	0.87
└ style adherence	0.95

Description

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — ".

THIS SLIDE: 15 — NEW: Synthesis closer (the title-thesis). SUBSTRATE: end-to-end-report/report/07_integrated.md + 14_pedigree_recombination.md; abstract title "Concerted evolution and unorthodox recombination of human subtelomeres". REQUIRED: NEW slide tying together: methodology (IMPG / 12% ER connectivity from slide 3) → empirical (extended pseudohomology + named clades from slides 4-9) → mechanism (Hi-C + 3D + meiotic bouquet from slides 10-12) → proof (pedigree from slide 13) → biology (DUX4 from slide 14) → THESIS. Optional: causal feedback loop schematic from paper_prep/figures/ed8/. End with one-line: "subtelomeres concertedly evolve through ongoing inter-chromosomal exchange — observable in pedigrees, predicted by 3D, recovered by an implicit pangenome graph across HPRC v2". Time budget: 70s.

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_<slug>.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — <slug>".

THIS SLIDE: 15 — NEW: Synthesis closer (the title-thesis).
SUBSTRATE: end-to-end-report/report/07_integrated.md + 14_pedigree_recombination.md; abstract title "Concerted evolution and unorthodox recombination of human subtelomeres".
REQUIRED: NEW slide tying together: methodology (IMPG / 12% ER connectivity from slide 3) → empirical (extended pseudohomology + named clades from slides 4-9) → mechanism (Hi-C + 3D + meiotic bouquet from slides 10-12) → proof (pedigree from slide 13) → biology (DUX4 from slide 14) → THESIS. Optional: causal feedback loop schematic from paper_prep/figures/ed8/. End with one-line: "subtelomeres concertedly evolve through ongoing inter-chromosomal exchange — observable in pedigrees, predicted by 3D, recovered by an implicit pangenome graph across HPRC v2". Time budget: 70s.

Depends on

done .assign-bog-v2-slide-15

Required by

Log

2026-05-06T00:34:52.199120638+00:00 Task paused
2026-05-06T00:37:42.482395149+00:00 Task published
2026-05-06T00:42:16.074432221+00:00 Lightweight assignment: agent=Careful Programmer (f5143935), exec_mode=full, context_scope=task, reason=Careful Programmer role matches slide creation requiring structured markdown, mandatory file format adherence, and potential light R/ggplot2 work; proven track record (0.84 score, 101 tasks) fits correctness-critical documentation task.
2026-05-06T00:43:32.554686118+00:00 Spawned by coordinator --executor claude --model opus
2026-05-06T00:43:43.021091481+00:00 Starting slide 15 synthesis closer — reading anchor docs and existing v2 slides for callbacks
2026-05-06T00:45:59.664812334+00:00 Wrote slides/v2/slide_15_concerted_evolution_thesis.md — synthesis closer with method/empirical/mechanism/proof/biology pillars, ed8(a) feedback loop figure, locked thesis pull-quote, 70s time budget
2026-05-06T00:46:30.153750691+00:00 Validated: all 6 mandatory sections present (Title, Bullets, Primary figure, Speaker notes, Time budget, Notes for synthesizer); time budget 70s matches table; ed8 figure exists at paper_prep/figures/ed8/figure_ed8.{pdf,png}
2026-05-06T00:46:43.809533968+00:00 Committed: 4df6614 — pushed to origin/wg/agent-773/bog-v2-slide-15
2026-05-06T00:46:49.922124418+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-06T00:49:30.128146189+00:00 PendingEval → Done (evaluator passed; downstream unblocks)