survey-rpe-1-self — workgraph

Metadata

Status	done
Assigned	`agent-656`
Agent identity	`3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647`
Created	2026-05-05T04:04:39.082878495+00:00
Started	2026-05-05T04:20:37.255859273+00:00
Completed	2026-05-05T04:27:46.556157156+00:00
Tags	`paper-prep,survey`, `eval-scheduled`
Eval score	0.92
└ blocking impact	0.90
└ completeness	0.94
└ coordination overhead	0.92
└ correctness	0.95
└ downstream usability	0.88
└ efficiency	0.85
└ intent fidelity	0.97
└ style adherence	0.90

Description

INPUT: end-to-end-report/report/09_rpe1_self.md (read fully). CONTEXT: Nature manuscript + 15-min talk. RPE-1 pipeline (self-discovered communities), Hi-C validation, comparison with HPRC communities, flanking control. TASK: Extract: (1) Key findings with metrics; (2) Existing figures (paths); (3) Existing CSVs (paths); (4) Methods; (5) Gaps; (6) Suggested figures (produced-vs-todo); (7) Talk slide takeaways. OUTPUT: paper_prep/surveys/SURVEY_09_rpe1_self.md (7 numbered sections). ACCEPTANCE: File exists, all 7 sections present, concrete paths cited.

INPUT: end-to-end-report/report/09_rpe1_self.md (read fully).
CONTEXT: Nature manuscript + 15-min talk. RPE-1 pipeline (self-discovered communities), Hi-C validation, comparison with HPRC communities, flanking control.
TASK: Extract: (1) Key findings with metrics; (2) Existing figures (paths); (3) Existing CSVs (paths); (4) Methods; (5) Gaps; (6) Suggested figures (produced-vs-todo); (7) Talk slide takeaways.
OUTPUT: paper_prep/surveys/SURVEY_09_rpe1_self.md (7 numbered sections).
ACCEPTANCE: File exists, all 7 sections present, concrete paths cited.

Depends on

done .assign-survey-rpe-1-self

Required by

Log

2026-05-05T04:04:39.060494374+00:00 Task paused
2026-05-05T04:20:13.012945163+00:00 Task resumed
2026-05-05T04:20:34.433966669+00:00 Lightweight assignment: agent=random-agent-3577bc75 (3577bc75), exec_mode=full, context_scope=task, reason=Documenter role with verify-against-source tradeoff matches survey extraction task requiring careful synthesis of findings, figures, methods, and gaps from source material.
2026-05-05T04:20:37.255863461+00:00 Spawned by coordinator --executor claude --model opus
2026-05-05T04:21:00.638425154+00:00 Starting: reading 09_rpe1_self.md to extract findings, figures, methods, gaps
2026-05-05T04:21:36.470347210+00:00 Verified file paths against /moosefs/guarracino/HPRCv2/PHR_III/RPE1_subtelo/. Note: actual community files are rpe1.communities.tsv (not rpe1_subtelo.communities.tsv as cited in source). Writing survey now.
2026-05-05T04:25:19.079826244+00:00 Validated: file exists at paper_prep/surveys/SURVEY_09_rpe1_self.md, 309 lines, 7 numbered sections (## 1...## 7) all present, concrete /moosefs/guarracino/HPRCv2/ paths cited and verified against on-disk listings
2026-05-05T04:27:40.536693214+00:00 Committed: 20702a2 — pushed to origin
2026-05-05T04:27:46.556160903+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-05T04:31:26.734479342+00:00 PendingEval → Done (evaluator passed; downstream unblocks)