bog-v2-slide-07 — workgraph

Metadata

Status	done
Assigned	`agent-801`
Agent identity	`3184716484e6f0ea08bb13539daf07686ee79d440505f1fdf2de0357707034c3`
Created	2026-05-06T00:34:51.340181780+00:00
Started	2026-05-06T00:51:50.229508808+00:00
Completed	2026-05-06T00:56:05.665646388+00:00
Tags	`bog-slide`, `bog-this-week`, `eval-scheduled`
Eval score	0.96
└ blocking impact	0.95
└ completeness	1.00
└ constraint fidelity	0.70
└ coordination overhead	0.93
└ correctness	0.95
└ downstream usability	0.98
└ efficiency	0.95
└ intent fidelity	0.86
└ style adherence	0.98

Description

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — ".

THIS SLIDE: 07 — All-vs-all clustered heatmap + NJ tree with named clades (revise v1 slide 7; KEY SLIDE). v1: clustered heatmap, dendrograms top+left, p/q-arm side annotation, missing introvert arms 2p/3p/5p/8q/11q/14q. AVAILABLE FIGURES: paper_prep/figures/fig1/figure_fig1.pdf panel 1c (Leiden k=15 + UPGMA dendrogram); paper_prep/figures/nj_tree_arms/nj_tree_annotated.pdf (PRODUCED BY DEPENDENCY TASK — read this from disk; it labels named clades). REQUIRED: this slide replaces v1 UPGMA-only with the NJ-annotated version. CRITICAL — the dendrogram blocks must be labeled with abstract clade names: PAR1, PAR2, acrocentric short arms, 10p-18p, the 22q,21q,19q,1q,13q,17q clade, 4q-10q DUX4. Highest-value v1->v2 win. Speaker notes: "the cladistic structure recovers expected pseudohomology + reveals novel clades". Time budget: 80s.

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_<slug>.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — <slug>".

THIS SLIDE: 07 — All-vs-all clustered heatmap + NJ tree with named clades (revise v1 slide 7; KEY SLIDE).
v1: clustered heatmap, dendrograms top+left, p/q-arm side annotation, missing introvert arms 2p/3p/5p/8q/11q/14q.
AVAILABLE FIGURES: paper_prep/figures/fig1/figure_fig1.pdf panel 1c (Leiden k=15 + UPGMA dendrogram); paper_prep/figures/nj_tree_arms/nj_tree_annotated.pdf (PRODUCED BY DEPENDENCY TASK — read this from disk; it labels named clades).
REQUIRED: this slide replaces v1 UPGMA-only with the NJ-annotated version. CRITICAL — the dendrogram blocks must be labeled with abstract clade names: PAR1, PAR2, acrocentric short arms, 10p-18p, the 22q,21q,19q,1q,13q,17q clade, 4q-10q DUX4. Highest-value v1->v2 win. Speaker notes: "the cladistic structure recovers expected pseudohomology + reveals novel clades". Time budget: 80s.

Depends on

Required by

Log

2026-05-06T00:34:51.310797561+00:00 Task paused
2026-05-06T00:34:58.179177236+00:00 Task published
2026-05-06T00:51:50.229513396+00:00 Spawned by coordinator --executor claude --model opus
2026-05-06T00:52:15.376480118+00:00 Starting work: producing slide 07 (all-vs-all heatmap + NJ tree with named clades)
2026-05-06T00:55:38.558403963+00:00 Wrote slides/v2/slide_07_allvsall_heatmap_nj_clades.md (two-panel: Fig 1c heatmap + nj_tree_annotated.pdf with 6 named abstract clades)
2026-05-06T00:55:58.008628327+00:00 Committed: a6ea1da — pushed to remote
2026-05-06T00:55:58.679718747+00:00 Validated: file structure matches sibling slides (Title/Bullets/Primary figure/Speaker notes/Time budget/Notes for synthesizer); all 6 abstract clades named; speaker-notes line 'cladistic structure recovers expected pseudohomology + reveals novel clades' present; 80s budget
2026-05-06T00:56:05.665650216+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-06T00:58:00.193533781+00:00 PendingEval → Done (evaluator passed; downstream unblocks)