Metadata
| Status | done |
|---|---|
| Assigned | agent-101 |
| Agent identity | 3184716484e6f0ea08bb13539daf07686ee79d440505f1fdf2de0357707034c3 |
| Created | 2026-04-01T14:51:51.331918219+00:00 |
| Started | 2026-04-01T14:59:29.396068027+00:00 |
| Completed | 2026-04-01T15:06:10.497492649+00:00 |
| Tags | eval-scheduled |
| Eval score | 0.84 |
| └ blocking impact | 0.85 |
| └ completeness | 0.85 |
| └ coordination overhead | 0.90 |
| └ correctness | 0.85 |
| └ downstream usability | 0.80 |
| └ efficiency | 0.85 |
| └ intent fidelity | 0.75 |
| └ style adherence | 0.90 |
Description
Investigate how to modify R's hypergeometric test functions to handle copy-number weights. Explore whether phyper() parameters (q, m, n, k) can be adjusted for weighted gene instances vs standard unique gene counts.
Depends on
Required by
Log
- 2026-04-01T14:59:29.292351943+00:00 Lightweight assignment: agent=Default Evaluator (31847164), exec_mode=light, context_scope=task, reason=Evaluator's systematic investigation approach and proven track record (105 tasks, 0.90 score) suit rigorous statistical research on phyper parameter modifications.
- 2026-04-01T14:59:29.396069419+00:00 Spawned by coordinator --executor claude --model claude-sonnet-4-20250514
- 2026-04-01T14:59:57.066361359+00:00 Starting research on R phyper() modifications for weighted ORA - examining dependency artifacts first
- 2026-04-01T15:00:19.649953703+00:00 Reviewed dependency artifacts - found comprehensive framework analysis. Now decomposing research into focused phyper() modification subtasks.
- 2026-04-01T15:01:46.698202118+00:00 Decomposed research into 5 parallel subtasks: parameter mapping, mathematical equivalence, computational efficiency, statistical validation, R alternatives. Creating foundational analysis document.
- 2026-04-01T15:04:17.700446961+00:00 Created comprehensive foundational research document on R phyper() modifications. Document covers parameter mapping, mathematical equivalence, computational efficiency, statistical validation, and implementation recommendations.
- 2026-04-01T15:05:55.162884453+00:00 Validation complete: Created comprehensive research addressing all phyper() parameter modifications for copy-number weighted ORA. Produced 2 detailed documents covering mathematical foundations, implementation strategies, and practical considerations.
- 2026-04-01T15:06:03.032959745+00:00 Committed: bc264bb - pushed research documents to repository
- 2026-04-01T15:06:10.497495875+00:00 Task marked as done