survey-mouse-cross — workgraph

Metadata

Status	done
Assigned	`agent-660`
Agent identity	`3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647`
Created	2026-05-05T04:02:31.543731432+00:00
Started	2026-05-05T04:24:21.978468007+00:00
Completed	2026-05-05T04:31:50.957511794+00:00
Tags	`paper-prep,survey`, `eval-scheduled`
Eval score	0.93
└ blocking impact	0.92
└ completeness	0.95
└ coordination overhead	0.92
└ correctness	0.95
└ downstream usability	0.90
└ efficiency	0.90
└ intent fidelity	0.97
└ style adherence	0.92

Description

INPUT: end-to-end-report/report/08_mouse.md (read fully). CONTEXT: Nature manuscript + 15-min talk; this task surveys ONE section. Mouse T2T pipeline (B6 + CAST), community detection, Hi-C across 4 meiotic stages (1Mb/2Mb/4Mb), window-size optimization (1Mb-33Mb), flanking Hi-C, sequence-level community-free. TASK: Extract: (1) Key findings with metrics; (2) Existing figures (paths); (3) Existing CSVs (paths); (4) Methods; (5) Gaps; (6) Suggested figures with captions (produced-vs-todo); (7) Talk slide takeaways. OUTPUT: paper_prep/surveys/SURVEY_08_mouse.md (7 numbered sections). ACCEPTANCE: File exists, all 7 sections present, concrete paths cited.

INPUT: end-to-end-report/report/08_mouse.md (read fully).
CONTEXT: Nature manuscript + 15-min talk; this task surveys ONE section. Mouse T2T pipeline (B6 + CAST), community detection, Hi-C across 4 meiotic stages (1Mb/2Mb/4Mb), window-size optimization (1Mb-33Mb), flanking Hi-C, sequence-level community-free.
TASK: Extract: (1) Key findings with metrics; (2) Existing figures (paths); (3) Existing CSVs (paths); (4) Methods; (5) Gaps; (6) Suggested figures with captions (produced-vs-todo); (7) Talk slide takeaways.
OUTPUT: paper_prep/surveys/SURVEY_08_mouse.md (7 numbered sections).
ACCEPTANCE: File exists, all 7 sections present, concrete paths cited.

Depends on

done .assign-survey-mouse-cross

Required by

Log

2026-05-05T04:02:31.529462204+00:00 Task paused
2026-05-05T04:23:48.088618852+00:00 Task resumed
2026-05-05T04:24:19.184415947+00:00 Lightweight assignment: agent=random-agent-3577bc75 (3577bc75), exec_mode=full, context_scope=task, reason=Documenter role directly matches survey extraction and synthesis; verify-against-code tradeoff ensures findings are grounded in source report; score 0.79 with 11 similar documentation tasks.
2026-05-05T04:24:21.978470972+00:00 Spawned by coordinator --executor claude --model opus
2026-05-05T04:24:29.894520981+00:00 Starting survey of 08_mouse.md — reading source
2026-05-05T04:25:30.722494451+00:00 Read source 08_mouse.md (259 lines), inspected output dirs in /moosefs/guarracino/HPRCv2/PHR_III/mouse_T2T/ — writing 7-section survey now
2026-05-05T04:31:25.085184920+00:00 Survey written: 433 lines, 7 numbered sections (Findings, Figures, CSVs, Methods, Gaps, Suggested figures, Talk takeaways). All paths cited reference real /moosefs/guarracino/HPRCv2/PHR_III/mouse_T2T/ directories I verified.
2026-05-05T04:31:41.060672438+00:00 Committed: 85a849b — pushed
2026-05-05T04:31:50.957515521+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-05T04:35:32.496097582+00:00 PendingEval → Done (evaluator passed; downstream unblocks)