bog-v2-slide-05 — workgraph

Metadata

Status	done
Assigned	`agent-763`
Agent identity	`3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647`
Created	2026-05-06T00:34:51.124993312+00:00
Started	2026-05-06T00:37:35.878115711+00:00
Completed	2026-05-06T00:42:23.226469141+00:00
Tags	`bog-slide`, `bog-this-week`, `eval-scheduled`
Eval score	0.83
└ blocking impact	0.87
└ completeness	0.88
└ constraint fidelity	0.70
└ coordination overhead	0.85
└ correctness	0.90
└ downstream usability	0.82
└ efficiency	0.85
└ intent fidelity	0.91
└ style adherence	0.92

Description

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — ".

THIS SLIDE: 05 — Interchromosomal similarities (n-chromosomes per region) (keep v1 slide 5). v1: chromosome-by-position plot, orange traces, CEN/PAR/PHR/XTR background. AVAILABLE FIGURE: paper_prep/figures/fig1/figure_fig1.pdf panel 1b. REQUIRED: keep v1; annotate PHR scale (median 105 kb / mean 144 kb). Speaker notes land "extended pseudohomology at nearly all subtelomeres". Time budget: 60s.

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_<slug>.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — <slug>".

THIS SLIDE: 05 — Interchromosomal similarities (n-chromosomes per region) (keep v1 slide 5).
v1: chromosome-by-position plot, orange traces, CEN/PAR/PHR/XTR background.
AVAILABLE FIGURE: paper_prep/figures/fig1/figure_fig1.pdf panel 1b.
REQUIRED: keep v1; annotate PHR scale (median 105 kb / mean 144 kb). Speaker notes land "extended pseudohomology at nearly all subtelomeres". Time budget: 60s.

Depends on

done .assign-bog-v2-slide-05

Required by

Log

2026-05-06T00:34:51.094626718+00:00 Task paused
2026-05-06T00:36:58.670695634+00:00 Task published
2026-05-06T00:37:32.064397263+00:00 Lightweight assignment: agent=random-agent-3577bc75 (3577bc75), exec_mode=full, context_scope=task, reason=Documenter role directly matches slide documentation creation; strong track record (39 tasks, 0.87 score); tradeoff 'verify-against-code-not-just-docs' aligns with need to ground content in existing figures and cross-validate with v1 deck.
2026-05-06T00:37:35.878118667+00:00 Spawned by coordinator --executor claude --model opus
2026-05-06T00:37:44.262600626+00:00 Starting slide 05 — interchromosomal similarities; reading v1 deck and references
2026-05-06T00:41:26.086825029+00:00 Drafted slides/v2/slide_05_interchrom_similarities.md — kept v1 figure (p_num_chromosomes_wide.pdf), added PHR scale annotation (median 105 kb, mean 144 kb, n=15,668), PAR2 callback, and optional R overlay snippet
2026-05-06T00:42:16.190051378+00:00 Committed: a96ae34 — pushed to origin/wg/agent-763/bog-v2-slide-05
2026-05-06T00:42:16.917037433+00:00 Validated: file follows mandated structure (Title / Bullets / Primary figure / Speaker notes / Time budget / Notes for synthesizer); v1 figure preserved (p_num_chromosomes_wide.pdf); PHR scale numbers (median 105 kb, mean 144 kb, n=15,668, 41/48 arms) sourced from CROSSWALK §C4; speaker-notes payoff lands 'extended pseudohomology at nearly all subtelomeres'; 60s time budget; no v1 deck files modified; no other v2 slide files touched
2026-05-06T00:42:23.226473419+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-06T00:48:19.625397862+00:00 PendingEval → Done (evaluator passed; downstream unblocks)