Metadata
| Status | done |
|---|---|
| Assigned | agent-2482 |
| Agent identity | 3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647 |
| Created | 2026-06-17T14:38:08.696358829+00:00 |
| Started | 2026-06-17T15:41:28.398604559+00:00 |
| Completed | 2026-06-17T15:46:15.042120906+00:00 |
| Tags | eval-scheduled |
| Eval score | 0.94 |
| └ blocking impact | 0.94 |
| └ completeness | 0.92 |
| └ constraint fidelity | 0.85 |
| └ coordination overhead | 0.95 |
| └ correctness | 0.95 |
| └ downstream usability | 0.96 |
| └ efficiency | 0.91 |
| └ intent fidelity | 0.93 |
| └ style adherence | 0.95 |
Description
Mechanical audit. Inspect submission/paper.tex, submission/bibliography.bib, and build artifacts if present. Identify duplicated main/Methods/Supp reference entries, wrong in-text citation targets, and the specific IMPG/odgi/Minigraph-Cactus citation mismatch described in the prompt.
Write paper_prep/manuscript_revision/A2_bibliography_audit.md with duplicate groups, current keys/numbers if known, affected citation commands, and a safe merge/renumber plan. Do not edit bibliography directly.
Validation
- Artifact exists
- Lists duplicate reference groups with bib keys where possible
- Flags any citation resolving to the wrong paper
- Provides exact files/sections for the integration patch
Depends on
Required by
Log
- 2026-06-17T14:38:08.663915162+00:00 Task paused
- 2026-06-17T14:49:16.983412171+00:00 Task published
- 2026-06-17T15:41:28.398608357+00:00 Spawned by coordinator --executor codex --model gpt-5.5
- 2026-06-17T15:41:36.689317453+00:00 Starting bibliography duplication and citation audit; will inspect paper.tex, bibliography.bib, and build artifacts before writing the A2 artifact.
- 2026-06-17T15:44:51.070340798+00:00 Wrote A2_bibliography_audit.md with duplicate main/Methods groups, reconstructed current numbers, wrong-target citation findings, and integration patch plan.
- 2026-06-17T15:45:29.733979252+00:00 Validated: artifact exists; duplicate groups with keys/numbers are listed; wrong-target IMPG/odgi/Minigraph-Cactus citation and likely VG stray citation are flagged; integration files/sections are enumerated. Build attempt documented as blocked by missing geometry.sty.
- 2026-06-17T15:45:41.025313398+00:00 Committed: 883c18e — pushed to remote
- 2026-06-17T15:46:15.042129422+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
- 2026-06-17T15:52:21.397472234+00:00 PendingEval → Done (evaluator passed; downstream unblocks)