review-zoom-v8-chm13-ucsc-example-selection

Metadata

Status	done
Assigned	`agent-1175`
Agent identity	`3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647`
Created	2026-05-08T01:37:52.179534850+00:00
Started	2026-05-08T01:42:12.689589293+00:00
Completed	2026-05-08T02:00:43.053591794+00:00
Tags	`review-zoom`, `review-zoom-v8`, `chm13`, `ucsc`, `gene-browser`, `slide14`, `deadline`, `eval-scheduled`
Eval score	0.95
└ blocking impact	0.96
└ completeness	0.94
└ coordination overhead	0.95
└ correctness	0.95
└ downstream usability	0.98
└ efficiency	0.92
└ intent fidelity	0.85
└ style adherence	0.96

Description

Replace the useless late slides 14d-to-end with selected examples from the CHM13 PHR UCSC browser suite.\n\nGoal:\n- Choose the best 4-8 browser examples for Erik to use in the talk, not all 37/41.\n- Prefer examples that are biologically interpretable and visually clear: D4Z4/DUX4 region, OR4F-rich ends, TAR1/repeat/gene examples, acrocentric p-arm examples, PAR1/PAR2 if helpful, and one example that makes clear the PHR is subtelomeric but not simply the telomere.\n- Use actual UCSC browser panel images from slides/chm13-phr-ucsc-browser/_assets/ucsc/panels, not the older schematic gene-browser panels, unless a v3 panel is clearly better as a backup.\n- Each selected slide needs a visible title with chromosome end, community if known, and a 1-line reason it is selected.\n- Include source/data labels: UCSC hs1/CHM13 browser, PHR BED track, exact coordinate range, manifest row.\n- Keep image large; avoid tiny browser screenshots.\n\nDeliverables:\n- selection_manifest.tsv with chosen panels, community, coordinate range, rationale, and source path.\n- Slide-ready cropped/resized PNG/PDF assets or direct-use guidance under slides/v2-review-zoom/_revision_assets/v8/chm13_ucsc_examples/.\n- SLIDE_PATCH.md saying exactly which v7 slides 14d-to-end to remove and which examples to insert.\n\nDo not edit final Typst deck directly; leave integration to review-zoom-v8-fanin-render.

Replace the useless late slides 14d-to-end with selected examples from the CHM13 PHR UCSC browser suite.\n\nGoal:\n- Choose the best 4-8 browser examples for Erik to use in the talk, not all 37/41.\n- Prefer examples that are biologically interpretable and visually clear: D4Z4/DUX4 region, OR4F-rich ends, TAR1/repeat/gene examples, acrocentric p-arm examples, PAR1/PAR2 if helpful, and one example that makes clear the PHR is subtelomeric but not simply the telomere.\n- Use actual UCSC browser panel images from slides/chm13-phr-ucsc-browser/_assets/ucsc/panels, not the older schematic gene-browser panels, unless a v3 panel is clearly better as a backup.\n- Each selected slide needs a visible title with chromosome end, community if known, and a 1-line reason it is selected.\n- Include source/data labels: UCSC hs1/CHM13 browser, PHR BED track, exact coordinate range, manifest row.\n- Keep image large; avoid tiny browser screenshots.\n\nDeliverables:\n- selection_manifest.tsv with chosen panels, community, coordinate range, rationale, and source path.\n- Slide-ready cropped/resized PNG/PDF assets or direct-use guidance under slides/v2-review-zoom/_revision_assets/v8/chm13_ucsc_examples/.\n- SLIDE_PATCH.md saying exactly which v7 slides 14d-to-end to remove and which examples to insert.\n\nDo not edit final Typst deck directly; leave integration to review-zoom-v8-fanin-render.

Depends on

Required by

Log

2026-05-08T01:37:52.152033224+00:00 Task paused
2026-05-08T01:39:02.384657700+00:00 Task published
2026-05-08T01:42:12.689594052+00:00 Spawned by coordinator --executor codex --model gpt-5.5
2026-05-08T01:42:30.310872677+00:00 Starting CHM13 UCSC example selection; checking existing worktree and inputs.
2026-05-08T01:46:17.066175119+00:00 Selected six primary CHM13 UCSC examples for one-for-one replacement of v7 slides 14d-15: chr4q C1, chr3q C3, chr15q C8, chr18p C2, chr21p C7, chrXp C15.
2026-05-08T01:56:53.085233598+00:00 Validated: selection_manifest.tsv has consistent TSV field counts and all source, copied, and slide asset paths exist; Typst renders six 1920x1080 slide PNGs and a PDF without warnings.
2026-05-08T01:57:59.659778014+00:00 Validated: documentation/artifact task, not a code task; cargo build/test are not applicable. No final Typst deck source was edited.
2026-05-08T01:59:48.625562161+00:00 Committed: ec5a020 — pushed to remote branch wg/agent-1175/review-zoom-v8-chm13-ucsc-example-selection.
2026-05-08T02:00:43.053600411+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-08T02:04:38.204702987+00:00 PendingEval → Done (evaluator passed; downstream unblocks)