Metadata
| Status | done |
|---|---|
| Assigned | agent-967 |
| Agent identity | 3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647 |
| Created | 2026-05-06T20:28:26.051219722+00:00 |
| Started | 2026-05-06T20:29:55.789998634+00:00 |
| Completed | 2026-05-06T20:41:12.307019119+00:00 |
| Tags | bog-this-week, bog-deck, review-zoom, revision-fanout, git-provenance, eval-scheduled |
| Eval score | 0.95 |
| └ blocking impact | 0.96 |
| └ completeness | 0.95 |
| └ constraint fidelity | 0.85 |
| └ coordination overhead | 0.94 |
| └ correctness | 0.95 |
| └ downstream usability | 0.97 |
| └ efficiency | 0.92 |
| └ intent fidelity | 0.93 |
| └ style adherence | 0.95 |
Description
Cross-cutting provenance audit for Erik's review of the zoom deck.
Goal: review the git repo itself to reconstruct what was done when, which scripts/assets produced each current slide, and how the current zoom review deck relates to earlier BoG/v2 work. This should guide all downstream slide-specific revision tasks.
Requirements:
- Use git history as primary evidence:
git log --oneline --decorate --all -- <paths>,git show,git diff,git blamewhere useful. - Cover at least these lineages: current
render-bog-annotated-zoom/ agent-951 commit, earlierbuild-bog-v2-3/ agent-878 zoom deck,bog-v2-slides/ agent-809 synthesis, and per-slide commits for 03/04/06/07/08/09/10/11/12/14. - Map each current zoom slide asset to its likely source: generated from script, copied from canonical v2-review assets, cropped from v2-zoom, external HPRCv2 path, or manually assembled.
- Identify stale/provenance risks, especially
.wg-worktrees/agent-878paths, copied/cropped PNGs, and assets whose generating scripts are not obvious. - Include external repo provenance hooks where relevant:
github.com:ekg/erdos_renyifor 03b andgithub.com/pangenome/HPRCv2image history for slide 04. - Produce a concise table that downstream workers can use: slide, current asset, source path/commit, generating script if known, open questions, recommendation.
- Do not edit deck source.
Deliverable:
slides/v2-review-zoom/_revision_assets/git_provenance/README.md
Depends on
Required by
- done
.flip-review-zoom-git-provenance-audit - done
review-zoom-03b-erdos-renyi - done
review-zoom-04-hprcv2-karyogram - done
review-zoom-06-length-redesign - done
review-zoom-07a-heatmap-tree-pq - done
review-zoom-07b-tree-complete-unrooted - done
review-zoom-08b-superpop-dispersion - done
review-zoom-09-mds-community-leading - done
review-zoom-14-gene-background - done
review-zoom-14-gene-enrichment-or4f - done
review-zoom-density-methods-narrative - done
review-zoom-hic-figure-redesign - done
review-zoom-hic-methods-glossary - done
review-zoom-v3-gene-browser-inventory - done
review-zoom-v3-gene-browser-render-assets - done
review-zoom-v3-human-3d-dotplot-correlation - done
review-zoom-v3-slide06-violin-censor - done
review-zoom-v3-slide07a-crisp-aligned - done
review-zoom-v3-slide07c-acrocentric-presence - done
review-zoom-v3-slide08b-within-pop-pairwise - done
review-zoom-v3-slide09-label-all-communities - done
review-zoom-v3-slide10a-axis-box-fix - done
review-zoom-v3-slide11-wb-labels
Log
- 2026-05-06T20:28:26.028489790+00:00 Task paused
- 2026-05-06T20:28:35.239658596+00:00 Task published
- 2026-05-06T20:29:55.790003253+00:00 Spawned by coordinator --executor codex --model gpt-5.5
- 2026-05-06T20:30:37.499961789+00:00 Starting git provenance audit; worktree clean. FANOUT_DECISION: stay inline — single requested README deliverable, with all evidence gathered from git history and repo files before one scoped documentation edit.
- 2026-05-06T20:36:48.077354590+00:00 Evidence gathered: git logs/show/stat/blame for agent-951, agent-878, agent-809 and per-slide commits; blob hash comparisons across current review-zoom, v2-review branch assets, v2-zoom crops, v2 outputs, and paper figures; external HPRCv2/erdos_renyi GitHub hooks checked via ls-remote and local filtered clones.
- 2026-05-06T20:40:13.430735170+00:00 Validated: deliverable exists; git diff --check passes; required lineage terms, external hooks, stale-path risks, and slide rows 03/04/06/07/08/09/10/11/12/14 are present; only the requested provenance README is modified.
- 2026-05-06T20:40:54.146294670+00:00 Committed: a2ac7d1 — pushed to origin/wg/agent-967/review-zoom-git-provenance-audit
- 2026-05-06T20:41:12.307028197+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
- 2026-05-06T20:43:44.770337170+00:00 PendingEval → Done (evaluator passed; downstream unblocks)