bog-v2-slide-04

BoG v2 slide 04 genome wide identity

Metadata

Statusdone
Assignedagent-760
Agent identity3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647
Created2026-05-06T00:34:51.014559900+00:00
Started2026-05-06T00:37:01.625795284+00:00
Completed2026-05-06T00:41:26.184534292+00:00
Tagsbog-slide, bog-this-week, eval-scheduled
Eval score0.85
└ blocking impact1.00
└ completeness0.85
└ constraint fidelity0.70
└ coordination overhead0.95
└ correctness0.90
└ downstream usability0.90
└ efficiency0.90
└ intent fidelity0.93
└ style adherence0.88

Description

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — ".

THIS SLIDE: 04 — Genome-wide identity heatmap (keep v1 slide 4; augment with PAR2 callout). v1: Genome-wide alignment identity 100kb windows; chr18q subtelomeric inset. AVAILABLE FIGURES: identity_heatmap_chr*.pdf (top-level, all 24); paper_prep/figures/fig1/figure_fig1.pdf panel 1a (genome-wide stacked). REQUIRED: keep visual concept. Pick best figure (panel 1a or per-chr zoom — recommend in your output). ADD callout: "extended interchrom homology spans 10s-100s kb — comparable to PAR2". Time budget: 70s.

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