survey-annotation-section

Metadata

Status	done
Assigned	`agent-633`
Agent identity	`3184716484e6f0ea08bb13539daf07686ee79d440505f1fdf2de0357707034c3`
Created	2026-05-04T22:32:49.485479407+00:00
Started	2026-05-04T22:44:17.098545500+00:00
Completed	2026-05-04T22:54:46.790905013+00:00
Tags	`paper-prep,survey`, `eval-scheduled`
Eval score	0.71
└ blocking impact	0.58
└ completeness	0.91
└ coordination overhead	0.57
└ correctness	0.84
└ downstream usability	0.81
└ efficiency	0.82
└ intent fidelity	0.41
└ style adherence	0.86

Description

INPUT: end-to-end-report/report/02_annotation.md (read fully). CONTEXT: Nature manuscript + 15-min talk on subtelomeric sequence sharing across HPRCv2; this task surveys ONE section. TASK: Extract: (1) Key findings with metrics; (2) Existing figures/plots referenced (paths); (3) Existing CSVs/data files (paths); (4) Methods used; (5) Open gaps for figure (re)generation; (6) Suggested figures (main + extended/SI) with caption ideas (mark already-produced vs to-generate); (7) Suggested talk slide takeaways. OUTPUT: paper_prep/surveys/SURVEY_02_annotation.md (7 numbered sections). ACCEPTANCE: File exists, all 7 sections present, concrete paths cited.

INPUT: end-to-end-report/report/02_annotation.md (read fully).
CONTEXT: Nature manuscript + 15-min talk on subtelomeric sequence sharing across HPRCv2; this task surveys ONE section.
TASK: Extract: (1) Key findings with metrics; (2) Existing figures/plots referenced (paths); (3) Existing CSVs/data files (paths); (4) Methods used; (5) Open gaps for figure (re)generation; (6) Suggested figures (main + extended/SI) with caption ideas (mark already-produced vs to-generate); (7) Suggested talk slide takeaways.
OUTPUT: paper_prep/surveys/SURVEY_02_annotation.md (7 numbered sections).
ACCEPTANCE: File exists, all 7 sections present, concrete paths cited.

Depends on

done .assign-survey-annotation-section

Required by

Log

2026-05-04T22:32:49.472019213+00:00 Task paused
2026-05-04T22:33:33.865484073+00:00 Task published
2026-05-04T22:44:17.098549387+00:00 Spawned by coordinator --executor claude --model opus
2026-05-04T22:44:37.009542590+00:00 Starting survey of annotation section. Reading input file.
2026-05-04T22:47:29.081745401+00:00 Wrote SURVEY_02_annotation.md with all 7 sections. Verifying acceptance criteria.
2026-05-04T22:49:57.306451912+00:00 Committed: 77ba424 — pushed to remote. Validated: file exists, all 7 numbered sections present, concrete paths cited.
2026-05-04T22:54:46.790908710+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-04T22:59:18.938061151+00:00 PendingEval → Done (evaluator passed; downstream unblocks)