review-zoom-07a-heatmap-tree-pq

Metadata

Status	done
Assigned	`agent-975`
Agent identity	`3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647`
Created	2026-05-06T20:26:21.802952742+00:00
Started	2026-05-06T20:44:43.870736703+00:00
Completed	2026-05-06T21:07:32.385541031+00:00
Tags	`bog-this-week`, `bog-deck`, `review-zoom`, `revision-fanout`, `eval-scheduled`, `git-provenance`
Eval score	0.91
└ blocking impact	0.90
└ completeness	0.90
└ constraint fidelity	0.85
└ coordination overhead	0.95
└ correctness	0.92
└ downstream usability	0.92
└ efficiency	0.89
└ intent fidelity	0.90
└ style adherence	0.87

Description

User review point 5.

Goal: clarify slide 07a: whether rows/columns are sorted by tree or community, whether it differs from slide 7 in slides/20260204_Subtelomics_overview_EG.pdf, and whether p/q labels can be colored red/blue. Produce a better heatmap/tree-left design if feasible.

Requirements:

Inspect current slide 07a asset/source, old overview deck summary/PDF, and scripts/data for arm-level Jaccard matrix and Leiden community assignments.
Determine and document the current ordering: tree, community, UPGMA/NJ, or manual.
Compare current view to slide 7 of slides/20260204_Subtelomics_overview_EG.pdf: what data/algorithm likely changed?
Prototype a heatmap layout with dendrogram/tree on the left if feasible.
Color row/column labels by arm side: p red, q blue, with a small legend or clear convention.
Do not edit deck source; final integration will render.

Deliverables:

Markdown diagnosis and recommendation.
Optional candidate heatmap PNG/PDF under slides/v2-review-zoom/_revision_assets/07a_heatmap_tree_pq/.

User review point 5.

Goal: clarify slide 07a: whether rows/columns are sorted by tree or community, whether it differs from slide 7 in slides/20260204_Subtelomics_overview_EG.pdf, and whether p/q labels can be colored red/blue. Produce a better heatmap/tree-left design if feasible.

Requirements:
- Inspect current slide 07a asset/source, old overview deck summary/PDF, and scripts/data for arm-level Jaccard matrix and Leiden community assignments.
- Determine and document the current ordering: tree, community, UPGMA/NJ, or manual.
- Compare current view to slide 7 of slides/20260204_Subtelomics_overview_EG.pdf: what data/algorithm likely changed?
- Prototype a heatmap layout with dendrogram/tree on the left if feasible.
- Color row/column labels by arm side: p red, q blue, with a small legend or clear convention.
- Do not edit deck source; final integration will render.

Deliverables:
- Markdown diagnosis and recommendation.
- Optional candidate heatmap PNG/PDF under slides/v2-review-zoom/_revision_assets/07a_heatmap_tree_pq/.

Depends on

Required by

Log

2026-05-06T20:26:21.774606393+00:00 Task paused
2026-05-06T20:28:35.239682992+00:00 Task published
2026-05-06T20:44:43.870741201+00:00 Spawned by coordinator --executor codex --model gpt-5.5
2026-05-06T20:45:05.643960897+00:00 Starting documentation/prototype pass: inspect slide 07a assets, old deck, data/scripts, then write diagnosis and optional candidate heatmap.
2026-05-06T20:55:08.815790439+00:00 Inspected current 07a Typst asset, slide 07 source, Fig 1 script/caption, old overview summary, external plot-similarity script/logs, arm distance matrix, Leiden and UPGMA assignments. Current 07a is Leiden-primary; old slide 7 likely pheatmap UPGMA-clustered similarity view.
2026-05-06T21:06:30.926846482+00:00 Validated: deliverables created under slides/v2-review-zoom/_revision_assets/07a_heatmap_tree_pq; Rscript rerender succeeds; PNG/PDF files identify correctly; git diff --cached --check passes; deck source untouched. Cargo build/test not applicable to this docs/prototype task.
2026-05-06T21:07:11.860611588+00:00 Committed: 49a1209 — pushed to origin/wg/agent-975/review-zoom-07a-heatmap-tree-pq
2026-05-06T21:07:32.385548636+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-06T21:14:31.270195452+00:00 PendingEval → Done (evaluator passed; downstream unblocks)