bog-v2-slide-13 — workgraph

Metadata

Status	done
Assigned	`agent-785`
Agent identity	`3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647`
Created	2026-05-06T00:34:52.027973807+00:00
Started	2026-05-06T00:48:48.858813877+00:00
Completed	2026-05-06T00:52:27.968826897+00:00
Tags	`bog-slide`, `bog-this-week`, `eval-scheduled`
Eval score	0.93
└ blocking impact	0.95
└ completeness	0.95
└ constraint fidelity	0.70
└ coordination overhead	0.95
└ correctness	0.95
└ downstream usability	0.93
└ efficiency	0.90
└ intent fidelity	0.93
└ style adherence	0.95

Description

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — ".

THIS SLIDE: 13 — NEW: Direct pedigree evidence of ongoing exchange (THE C8 / title-thesis evidence). SUBSTRATE: end-to-end-report/report/14_pedigree_recombination.md (556 lines). AVAILABLE FIGURES: end-to-end-report/pedigree-plots/washu/PAN027.maternal_hap1_from_PAN010_mother.untangle.pdf (and paternal); end-to-end-report/pedigree-plots/ceph1463-{hifiasm,verkko}/. KEY NUMBERS: WashU 3-gen T2T pedigree → 538 high-quality inter-chromosomal patches, 494 (92%) within Leiden communities; 133 gene-conversion-like at score ≥0.81 (96 at perfect 1.000); 16 crossover-like; CEPH1463 4-gen → 11 cross-assembler-validated parent features. REQUIRED: NEW slide. Lead with one WashU untangle ribbon (PAN027 maternal_hap1 from PAN010). FRAME: "this is the direct empirical proof that subtelomeric exchange is ONGOING — happening in three living generations". Title-thesis evidence; spend time. Time budget: 90s.

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_<slug>.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — <slug>".

THIS SLIDE: 13 — NEW: Direct pedigree evidence of ongoing exchange (THE C8 / title-thesis evidence).
SUBSTRATE: end-to-end-report/report/14_pedigree_recombination.md (556 lines).
AVAILABLE FIGURES: end-to-end-report/pedigree-plots/washu/PAN027.maternal_hap1_from_PAN010_mother.untangle.pdf (and paternal); end-to-end-report/pedigree-plots/ceph1463-{hifiasm,verkko}/.
KEY NUMBERS: WashU 3-gen T2T pedigree → 538 high-quality inter-chromosomal patches, 494 (92%) within Leiden communities; 133 gene-conversion-like at score ≥0.81 (96 at perfect 1.000); 16 crossover-like; CEPH1463 4-gen → 11 cross-assembler-validated parent features.
REQUIRED: NEW slide. Lead with one WashU untangle ribbon (PAN027 maternal_hap1 from PAN010). FRAME: "this is the direct empirical proof that subtelomeric exchange is ONGOING — happening in three living generations". Title-thesis evidence; spend time. Time budget: 90s.

Depends on

done .assign-bog-v2-slide-13

Required by

Log

2026-05-06T00:34:51.945602052+00:00 Task paused
2026-05-06T00:37:42.482393315+00:00 Task published
2026-05-06T00:42:48.147973270+00:00 Lightweight assignment: agent=random-agent-3577bc75 (3577bc75), exec_mode=full, context_scope=task, reason=Documenter role perfectly matches scientific slide synthesis task; strong score (0.87) and proven track record (39 tasks) suit rigorous content integration from substrate files.
2026-05-06T00:48:48.858817894+00:00 Spawned by coordinator --executor claude --model opus
2026-05-06T00:48:55.576227930+00:00 Starting slide 13 — pedigree direct evidence (THE C8 / title-thesis)
2026-05-06T00:51:32.276924548+00:00 Drafted slide_13_pedigree_direct_evidence.md (~5 bullets, 90s budget, lead figure PAN027 maternal_hap1 from PAN010, optional triptych)
2026-05-06T00:51:58.212164278+00:00 Committed: 8cfdbe3 — pushed to origin/wg/agent-785/bog-v2-slide-13
2026-05-06T00:52:10.954292540+00:00 Validated: file structure has 6 required ## sections (Title, Bullets, Primary figure, Speaker notes, Time budget, Notes for synthesizer); all 3 referenced WashU pedigree PDFs exist on disk; numbers cross-checked against end-to-end-report/report/14_pedigree_recombination.md (538/494/92%, 133 gene_conv at >=0.81, 16 crossover_like, 11 CEPH1463 cross-assembler features, DUX4 chr10q<-chr4q at 0.957 in PAN028 maternal); slide 15 numbers consistent.
2026-05-06T00:52:27.968831055+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-06T00:54:32.186890496+00:00 PendingEval → Done (evaluator passed; downstream unblocks)