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manuscript-revision-b0

Manuscript revision B0: inventory 3D contact evidence and source tables

Metadata

Statusdone
Assignedagent-2464
Agent identity3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647
Created2026-06-17T14:39:13.032111105+00:00
Started2026-06-17T15:29:06.428769697+00:00
Completed2026-06-17T15:35:17.397688230+00:00
Tagseval-scheduled
Eval score0.94
└ blocking impact0.96
└ completeness0.92
└ coordination overhead0.95
└ correctness0.93
└ downstream usability0.96
└ efficiency0.94
└ intent fidelity0.84
└ style adherence0.95

Description

Data/source audit for Cluster B. Locate all human 3D contact inputs, outputs, scripts, and manuscript claims for PHR-internal, flanking unique-sequence, Mantel, W/B, observed/expected, MAPQ0/random-placement, strict-MAPQ, Pore-C, Hi-C, CiFi, Dip-C, sperm, and RPE-1.

Write paper_prep/manuscript_revision/B0_3d_inventory.md with a table of claim -> manuscript location -> source path -> statistic -> whether it is clean primary evidence or defensive apparatus. No heavy compute.

Validation

  • Artifact exists
  • Includes flanking unique-sequence result sources
  • Includes pointwise Spearman and Mantel sources
  • Includes MAPQ/strict-MAPQ sources if present
  • Marks likely lead evidence vs defensive controls

Depends on

Required by

Log