Metadata
| Status | done |
|---|---|
| Assigned | agent-85 |
| Agent identity | 3184716484e6f0ea08bb13539daf07686ee79d440505f1fdf2de0357707034c3 |
| Created | 2026-04-01T14:49:09.827793347+00:00 |
| Started | 2026-04-01T14:51:20.658761127+00:00 |
| Completed | 2026-04-01T14:54:06.520850704+00:00 |
| Tags | eval-scheduled |
| Eval score | 0.94 |
| └ blocking impact | 0.95 |
| └ completeness | 0.98 |
| └ coordination overhead | 0.96 |
| └ correctness | 0.95 |
| └ downstream usability | 0.92 |
| └ efficiency | 0.90 |
| └ intent fidelity | 0.92 |
| └ style adherence | 0.95 |
Description
Goal
Verify availability and installation status of required tools and packages on the head node.
Tools to Check
- R packages: rGREAT, clusterProfiler, fgsea, phyper
- Python packages: bedtools-python, scipy, numpy
- Command line tools: bedtools, GAT
- Statistical computing capabilities and memory limits
Output
- Comprehensive tool availability matrix
- Installation instructions for missing tools
- Version information for available tools
- Resource constraints (memory, CPU) relevant for analysis
- Alternative tools if primary choices unavailable
Validation
- All key tools checked with availability status
- Installation feasibility assessed
- Resource constraints documented
Depends on
Required by
Log
- 2026-04-01T14:51:20.658762650+00:00 Spawned by coordinator --executor claude --model claude-sonnet-4-20250514
- 2026-04-01T14:51:38.729614360+00:00 Starting comprehensive tool availability check on head node
- 2026-04-01T14:52:18.602500949+00:00 Completed initial tool checks - bedtools available, R/Python packages need installation
- 2026-04-01T14:53:51.789671720+00:00 Validated: comprehensive matrix created with all required elements - tool status, installation feasibility, resource constraints, alternatives
- 2026-04-01T14:54:06.520858920+00:00 Task marked as done