bog-v2-slide-11 — workgraph

Metadata

Status	done
Assigned	`agent-770`
Agent identity	`3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647`
Created	2026-05-06T00:34:51.754923702+00:00
Started	2026-05-06T00:41:33.572873288+00:00
Completed	2026-05-06T00:45:31.395507769+00:00
Tags	`bog-slide`, `bog-this-week`, `eval-scheduled`
Eval score	0.94
└ blocking impact	0.95
└ completeness	0.95
└ constraint fidelity	0.70
└ coordination overhead	0.95
└ correctness	0.95
└ downstream usability	0.93
└ efficiency	0.90
└ intent fidelity	0.88
└ style adherence	0.95

Description

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — ".

THIS SLIDE: 11 — NEW: Single-cell 3D (GM12878 Dip-C + sperm). SUBSTRATE: end-to-end-report/report/06_dipc_validation.md (Tan 2018 GM12878 + Xu 2025 sperm). KEY NUMBERS: GM12878 16 cells: 6.9% closer within-community, Wilcoxon p=3.8e-04, Mantel ρ=0.296. Sperm 20 cells (Xu et al 2025): W/B=0.401 (60% closer), Fisher p=3.9e-51. Negative-control "S" pseudo-community of 7 zero-signal arms: 11% farther in GM12878, 40% farther in sperm. REQUIRED: NEW slide. Frame: "single-cell 3D confirms the bulk Hi-C signal — and crucially, IT WORKS IN HAPLOID SPERM". Sperm is the bridge to germline cells (next slide is mouse meiotic). Time budget: 60s.

SHARED CONTEXT — BoG-this-week slide fanout. Lead author: Erik Garrison. Co-author: Andrea Guarracino. ANCHOR: paper_prep/synthesis/ABSTRACT.md. SUBSTRATE: end-to-end-report/ (Andrea 14-chapter report) + paper_prep/synthesis/CROSSWALK.md. EXISTING V1 DECK: slides/20260204_Subtelomics_overview_EG.summary.md (slide-by-slide ChatGPT extract — 240 lines, easiest entry) + slides/20260204_Subtelomics_overview_EG.pdf. TALK SLOT: 15 min. TOTAL SLIDES: 15. OUTPUT FILE: slides/v2/slide_NN_<slug>.md (NN = your slide number, slug short). FILE STRUCTURE (mandatory): ## Title (1 line) / ## Bullets (3-5, conference-style) / ## Primary figure (path if exists OR ggplot2/R generation script for any new annotation overlay; light R/ggplot2 work is OK inside agent worktree, no SBATCH) / ## Speaker notes (~150 words) / ## Time budget (target seconds matching the table) / ## Notes for synthesizer (cross-slide concerns, callbacks, what previous slide sets up). DO NOT modify v1 deck files. DO NOT touch other slide files in slides/v2/. Single output file. Single commit per task: "docs: BoG v2 slide NN — <slug>".

THIS SLIDE: 11 — NEW: Single-cell 3D (GM12878 Dip-C + sperm).
SUBSTRATE: end-to-end-report/report/06_dipc_validation.md (Tan 2018 GM12878 + Xu 2025 sperm).
KEY NUMBERS: GM12878 16 cells: 6.9% closer within-community, Wilcoxon p=3.8e-04, Mantel ρ=0.296. Sperm 20 cells (Xu et al 2025): W/B=0.401 (60% closer), Fisher p=3.9e-51. Negative-control "S" pseudo-community of 7 zero-signal arms: 11% farther in GM12878, 40% farther in sperm.
REQUIRED: NEW slide. Frame: "single-cell 3D confirms the bulk Hi-C signal — and crucially, IT WORKS IN HAPLOID SPERM". Sperm is the bridge to germline cells (next slide is mouse meiotic). Time budget: 60s.

Depends on

done .assign-bog-v2-slide-11

Required by

Log

2026-05-06T00:34:51.731156832+00:00 Task paused
2026-05-06T00:37:42.482391422+00:00 Task published
2026-05-06T00:40:22.641277923+00:00 Lightweight assignment: agent=random-agent-3577bc75 (3577bc75), exec_mode=full, context_scope=task, reason=Documenter role with verification-against-sources tradeoff is ideal for synthesizing slide content from end-to-end-report/06_dipc_validation.md and creating formatted presentation material.
2026-05-06T00:41:33.572877075+00:00 Spawned by coordinator --executor claude --model opus
2026-05-06T00:41:41.971169004+00:00 Starting work on slide 11 — single-cell 3D (GM12878 Dip-C + sperm)
2026-05-06T00:43:11.102944505+00:00 Located: report/06_dipc_validation.md substrate, fig3 (Dip-C+sperm panels), and dipc_t2t output dirs
2026-05-06T00:45:10.222397902+00:00 Wrote slides/v2/slide_11_single_cell_3d.md (60s budget, GM12878+sperm+S_all neg-control, bridges to mouse meiotic)
2026-05-06T00:45:26.724043750+00:00 Committed: 1255c69 — pushed to remote
2026-05-06T00:45:31.395515705+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-06T00:51:26.529637415+00:00 PendingEval → Done (evaluator passed; downstream unblocks)