validate-captions-references

Metadata

Status	done
Assigned	`agent-694`
Agent identity	`3184716484e6f0ea08bb13539daf07686ee79d440505f1fdf2de0357707034c3`
Created	2026-05-05T05:12:40.795698410+00:00
Started	2026-05-05T05:28:05.721527793+00:00
Completed	2026-05-05T05:36:16.963462734+00:00
Tags	`paper-prep,validation`, `eval-scheduled`
Eval score	0.81
└ blocking impact	0.85
└ completeness	0.82
└ constraint fidelity	0.85
└ coordination overhead	0.83
└ correctness	0.76
└ downstream usability	0.82
└ efficiency	0.88
└ intent fidelity	0.83
└ style adherence	0.85

Description

Caption + reference cross-check. Implement directly — do not decompose further.

Validation

Every caption in paper_prep/figures/*/caption.md has p-value, n, and effect-size if applicable
Bibliography assembled covering: Mefford & Trask 2002, Flint 1997, Linardopoulou 2005, Ambrosini 2007, Riethman 2004, Stong 2014, Bailey 2002, Trask 1998, van Deutekom 1996, Stout 1999, Rouyer 1986, Cechova 2025, Francis 2025, Porubsky 2025, Xu 2025, Zuo 2021, Tan 2018, Lemmers 2010, Masny 2004, Ottaviani 2009, Patel 2019, Lalli 2025, Gershman 2022, plus any Stergachis Fiber-seq paper
Output: paper_prep/synthesis/REFERENCES.bib (BibTeX) and paper_prep/synthesis/CAPTIONS.md (one per figure, deduped)

Inputs

paper_prep/synthesis/MANUSCRIPT_SKELETON.md
paper_prep/surveys/SURVEY_FRAMING_cytogenetic_fish.md (named-author citation list)

## Description
Caption + reference cross-check. Implement directly — do not decompose further.

## Validation
- [ ] Every caption in `paper_prep/figures/*/caption.md` has p-value, n, and effect-size if applicable
- [ ] Bibliography assembled covering: Mefford & Trask 2002, Flint 1997, Linardopoulou 2005, Ambrosini 2007, Riethman 2004, Stong 2014, Bailey 2002, Trask 1998, van Deutekom 1996, Stout 1999, Rouyer 1986, Cechova 2025, Francis 2025, Porubsky 2025, Xu 2025, Zuo 2021, Tan 2018, Lemmers 2010, Masny 2004, Ottaviani 2009, Patel 2019, Lalli 2025, Gershman 2022, plus any Stergachis Fiber-seq paper
- [ ] Output: `paper_prep/synthesis/REFERENCES.bib` (BibTeX) and `paper_prep/synthesis/CAPTIONS.md` (one per figure, deduped)

## Inputs
- `paper_prep/synthesis/MANUSCRIPT_SKELETON.md`
- `paper_prep/surveys/SURVEY_FRAMING_cytogenetic_fish.md` (named-author citation list)

Depends on

Required by

Log

2026-05-05T05:28:05.721531640+00:00 Spawned by coordinator --executor claude --model opus
2026-05-05T05:28:16.379179228+00:00 Starting: read MANUSCRIPT_SKELETON, surveys, and figure captions
2026-05-05T05:28:48.140266304+00:00 Figures dir absent; figure tasks pending. Operating on captions in MANUSCRIPT_SKELETON.md per WORK_DECOMPOSITION acceptance #12
2026-05-05T05:35:44.689057530+00:00 Validated: REFERENCES.bib has 24 entries covering all 23 named citations (incl. Stergachis Fiber-seq seed). CAPTIONS.md has 12 deduplicated entries (Fig 1-4 + ED1-ED8); each carries p-value/n/effect-size where applicable; pure-schematic panels (ED1a, ED8a, ED8b) flagged.
2026-05-05T05:36:10.983751646+00:00 Committed: 03df5df — pushed to origin/wg/agent-694/validate-captions-references
2026-05-05T05:36:16.963465429+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-05T06:04:15.407664033+00:00 PendingEval → Done (evaluator passed; downstream unblocks)