Metadata
| Status | done |
|---|---|
| Assigned | agent-732 |
| Agent identity | 3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647 |
| Created | 2026-05-05T05:16:54.765828433+00:00 |
| Started | 2026-05-05T06:13:01.321625507+00:00 |
| Completed | 2026-05-05T06:21:46.794674882+00:00 |
| Tags | paper-prep,integrator, eval-scheduled |
| Eval score | 0.80 |
| └ blocking impact | 0.85 |
| └ completeness | 0.85 |
| └ constraint fidelity | 0.85 |
| └ coordination overhead | 0.75 |
| └ correctness | 0.80 |
| └ downstream usability | 0.82 |
| └ efficiency | 0.78 |
| └ intent fidelity | 0.93 |
| └ style adherence | 0.72 |
Description
Description
Integrator. Compile a rough manuscript draft (~3,000 words) integrating all 9 figure tasks + 4 validation tasks + skeleton + survey content. Implement directly — do not decompose further.
File scope
paper_prep/synthesis/MANUSCRIPT_DRAFT.md
Reads
paper_prep/synthesis/MANUSCRIPT_SKELETON.md,TALK_OUTLINE_15MIN.md,WORK_DECOMPOSITION.mdpaper_prep/synthesis/{STATS_AUDIT.md, SCRIPT_INVENTORY.md, VERSIONS.md, REFERENCES.bib, CAPTIONS.md, ACCEPTANCE_CHECKLIST.md, NOVEL_CONTRIBUTIONS.tsv, LIMITATIONS_X_FINDINGS.tsv}- All
paper_prep/figures/*/caption.md - All 13
paper_prep/surveys/SURVEY_*.md
Validation
- Word count main text 2,500–3,500
- Six main-text sections per skeleton outline (Intro, Communities, Heterogeneity, 3D, Pedigree+Cross-species, Discussion)
-
Inline figure callouts
[Fig 1]..[Fig 4]and[ED1]..[ED8]and[Table 1] - Every figure / ED / table referenced ≥ once
- No claim without a TSV / figure citation (each numerical value traceable)
- Honest-null section (recombination ρ = 0.00 after confound removal) explicitly present in Discussion
- Methods stubs (~500 words; pointers to script inventory)
-
Bibliography appended from
REFERENCES.bib
Tag
paper-prep,integrator
Depends on
- done
figure-1-landscape-communities - done
figure-2-heterogeneity-population - done
figure-3-3d-convergence - done
figure-4-pedigree-mouse - done
figure-ed1-ed2-pipeline-seqlevel - done
figure-ed3-ed4-annotation-genes - done
figure-ed5-hic-robustness - done
figure-ed6-ed7-singlecell-mouse - done
figure-ed8-discussion-models - done
validate-statistics-fdr-cis - done
validate-reproducibility-paths - done
validate-captions-references - done
validate-acceptance-checklist - done
.assign-compile-manuscript-draft
Required by
Log
- 2026-05-05T06:12:57.424783759+00:00 Lightweight assignment: agent=random-agent-3577bc75 (3577bc75), exec_mode=full, context_scope=graph, reason=Documenter role perfectly fits manuscript synthesis; verify-against-sources tradeoff critical for validating claims against 14 dependent figures/validations; high integration span requires graph context.
- 2026-05-05T06:13:01.321629014+00:00 Spawned by coordinator --executor claude --model opus
- 2026-05-05T06:13:10.026239148+00:00 Starting manuscript draft compilation. Inspecting inputs.
- 2026-05-05T06:14:10.047052942+00:00 Inputs surveyed: SKELETON, CAPTIONS, STATS_AUDIT, REFERENCES.bib, SCRIPT_INVENTORY, VERSIONS, NOVEL_CONTRIBUTIONS, LIMITATIONS_X_FINDINGS, ACCEPTANCE_CHECKLIST. Drafting MANUSCRIPT_DRAFT.md now.
- 2026-05-05T06:19:23.285728333+00:00 Draft written. Validation: main text 3,061 words (target 2,500–3,500); 6 main sections (Intro, Communities, Heterogeneity, 3D, Pedigree, Discussion); all [Fig 1..4], [ED1..8], [Table 1] callouts present (most also panel-suffixed); honest-null section explicit (recombination ρ = 0.00, p = 0.98 in Discussion §6 with [ED8c]); Methods stub 550 words pointing to SCRIPT_INVENTORY+VERSIONS; bibliography appended verbatim from REFERENCES.bib (24 entries).
- 2026-05-05T06:21:41.420074234+00:00 Committed: caf46f6 — pushed to origin/wg/agent-732/compile-manuscript-draft
- 2026-05-05T06:21:46.794678769+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
- 2026-05-05T06:26:02.557472272+00:00 PendingEval → Done (evaluator passed; downstream unblocks)