Metadata
| Status | done |
|---|---|
| Assigned | agent-740 |
| Agent identity | 46f6237a65ec4f1002c4d3fb201dc8633638d0947c276be7008c227e1051ba5e |
| Created | 2026-05-05T18:13:40.229531672+00:00 |
| Started | 2026-05-05T18:14:12.854845566+00:00 |
| Completed | 2026-05-05T18:19:41.537074444+00:00 |
| Tags | paper-prep, render, typst, eval-scheduled |
| Eval score | 0.85 |
| └ blocking impact | 0.90 |
| └ completeness | 0.90 |
| └ constraint fidelity | 0.70 |
| └ coordination overhead | 0.85 |
| └ correctness | 0.85 |
| └ downstream usability | 0.85 |
| └ efficiency | 0.75 |
| └ intent fidelity | 0.60 |
| └ style adherence | 0.80 |
Description
GOAL: produce paper_prep/synthesis/MANUSCRIPT_DRAFT.pdf from paper_prep/synthesis/MANUSCRIPT_DRAFT.md using typst (NOT xelatex/pdflatex — those have a broken texlive format file in this guix profile).
CONTEXT: Two prior attempts (render-manuscript-draft-2, render-manuscript-draft-3) failed because xelatex.fmt was compiled against a different xelatex binary version. User chose to pivot to typst because it's a single statically-linked Rust binary that handles PDF figures natively and avoids texlive entirely.
PIPELINE: markdown -> (pandoc) -> typst -> (typst compile) -> PDF
ENVIRONMENT (already verified by coordinator):
- cargo 1.94.1 at /home/erikg/.cargo/bin/cargo (use this to install typst)
- pandoc 2.19.2 at /home/erikg/.guix-profile/bin/pandoc — TOO OLD (typst writer landed in pandoc 3.1.2). Need to upgrade.
- typst not yet installed
- paper_prep/synthesis/MANUSCRIPT_DRAFT.md exists (~34KB)
- paper_prep/synthesis/REFERENCES.bib exists (~18KB)
- Figures: paper_prep/figures/{fig1..fig4,ed1..ed8}/*.pdf (typst handles PDF figures natively)
TASK — log every step with 'wg log':
- Install typst via cargo: cargo install --locked typst-cli This may take several minutes to compile. Verify with 'typst --version'.
- Install a newer pandoc (>=3.1.2 needed for typst writer). Try in this order: a. Download static binary from GitHub releases: curl -L -o /tmp/pandoc.tar.gz https://github.com/jgm/pandoc/releases/download/3.5/pandoc-3.5-linux-amd64.tar.gz tar -xzf /tmp/pandoc.tar.gz -C /tmp export PATH=/tmp/pandoc-3.5/bin:$PATH pandoc --version # verify >=3.1.2 b. Fallback: 'guix install pandoc' if guix has a recent enough version (check 'guix show pandoc' first)
- Convert markdown to typst:
cd paper_prep/synthesis
pandoc MANUSCRIPT_DRAFT.md
--citeproc --bibliography=REFERENCES.bib
-t typst
-o MANUSCRIPT_DRAFT.typ 2>&1 | tee pandoc_convert.log If --citeproc fails, retry without it (we will fix bibliography integration later) and log the error. - Inspect MANUSCRIPT_DRAFT.typ briefly — make sure figure references resolve relative to paper_prep/synthesis/. If figure paths look wrong, adjust them in the .typ file (typst expects forward-slash relative paths).
- Compile to PDF: typst compile MANUSCRIPT_DRAFT.typ MANUSCRIPT_DRAFT.pdf 2>&1 | tee render.log If typst complains about a figure path or font, fix in the .typ working copy and retry. Typst native PDF figure embedding should Just Work for paper_prep/figures//.pdf.
- Verify: 'file paper_prep/synthesis/MANUSCRIPT_DRAFT.pdf' reports 'PDF document'; 'pdfinfo paper_prep/synthesis/MANUSCRIPT_DRAFT.pdf' shows >= 5 pages.
- Record paper_prep/synthesis/MANUSCRIPT_DRAFT.pdf as a wg artifact. DO NOT git add (gitignored).
- Save render.log + pandoc_convert.log + MANUSCRIPT_DRAFT.typ in paper_prep/synthesis/. Do NOT git add the .pdf.
ACCEPTANCE: paper_prep/synthesis/MANUSCRIPT_DRAFT.pdf exists, file reports 'PDF document', pdfinfo >= 5 pages, wg artifact recorded. If unrecoverable, 'wg fail' with the SPECIFIC error from each pipeline step (paste error lines).
Depends on
Required by
Log
- 2026-05-05T18:13:40.213263209+00:00 Task paused
- 2026-05-05T18:13:42.889058520+00:00 Task published
- 2026-05-05T18:14:08.340436768+00:00 Lightweight assignment: agent=random-agent-46f6237a (46f6237a), exec_mode=full, context_scope=task, reason=Pipeline Operator role is explicitly designed for sequential tool execution; 'use-concrete-before-abstract' tradeoff aligns with following detailed multi-step specification with verification at each stage.
- 2026-05-05T18:14:12.854849043+00:00 Spawned by coordinator --executor claude --model opus
- 2026-05-05T18:14:23.578756023+00:00 Starting render via typst pipeline. Verifying environment.
- 2026-05-05T18:14:33.789149962+00:00 Installing typst-cli via cargo (may take several minutes)
- 2026-05-05T18:14:36.604559855+00:00 Downloading pandoc 3.5 static binary
- 2026-05-05T18:15:13.386269311+00:00 cargo install typst-cli failed: openssl-sys can't find OpenSSL/pkg-config. Trying pre-built typst binary from GitHub releases instead.
- 2026-05-05T18:15:23.638274550+00:00 Installed typst 0.13.1 prebuilt at ~/.local/bin/typst. Pandoc 3.5 at /tmp/pandoc-3.5/bin/pandoc. Now converting markdown -> typst.
- 2026-05-05T18:16:45.608203883+00:00 Pandoc citeproc + typst output has a citation/label mismatch. Reconverting without --citeproc and using typst native bibliography directive.
- 2026-05-05T18:19:14.221569968+00:00 PDF rendered successfully: 7 pages, 109KB. typst 0.13.1 prebuilt + pandoc 3.5 static binary. Citations rendered via typst native @key + #bibliography directive (NOT pandoc citeproc, which produced broken label refs). Body section after bibliography preamble removed (was raw bibtex code block).
- 2026-05-05T18:19:35.653079225+00:00 Committed: e1c68eb — pushed to remote. Validation: file shows 'PDF document', 7 pages (>= 5), all 4 artifacts recorded.
- 2026-05-05T18:19:41.537077280+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
- 2026-05-05T18:21:07.865648126+00:00 PendingEval → Done (evaluator passed; downstream unblocks)