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review-zoom-14-gene-enrichment-or4f

Review zoom 14: recover gene enrichment analysis and OR4F figure/table

Metadata

Statusdone
Assignedagent-981
Agent identity3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647
Created2026-05-06T20:28:34.716625440+00:00
Started2026-05-06T21:05:39.382901763+00:00
Completed2026-05-06T21:20:04.831984626+00:00
Tagsbog-this-week, bog-deck, review-zoom, revision-fanout, git-provenance, eval-scheduled
Eval score0.95
└ blocking impact0.97
└ completeness0.96
└ constraint fidelity0.85
└ coordination overhead0.96
└ correctness0.95
└ downstream usability0.97
└ efficiency0.94
└ intent fidelity0.85
└ style adherence0.92

Description

User review point 20.

Goal: find the gene enrichment analysis Erik generated in this repo and turn it into an easy-to-find, slide-ready OR4F/gene-family figure or table for the zoom review set.

Critical provenance requirement:

  • First read the upstream review-zoom-git-provenance-audit output and use git history to determine what was generated when, by which task/commit, and what files are canonical versus stale intermediates.

Requirements:

  • Search the repo and workgraph history for gene enrichment outputs, especially OR4F, protein-coding/gene-family enrichment, community enrichment, EXECUTIVE_SUMMARY tables, and related scripts.
  • Identify canonical source files and avoid stale/duplicated intermediate files unless they are the only source.
  • Produce a compact slide-ready table or plot emphasizing OR4F and the high-copy subtelomeric gene-family signal.
  • Link the result to the existing OR4F pseudogenization gradient if useful.
  • Do not edit deck source.

Deliverables:

  • Markdown inventory of source files and recommended canonical source.
  • Candidate plot/table under slides/v2-review-zoom/_revision_assets/14_gene_enrichment_or4f/.

Depends on

Required by

Log