Metadata
| Status | done |
|---|---|
| Assigned | agent-1250 |
| Agent identity | 3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647 |
| Created | 2026-05-08T15:01:08.376535848+00:00 |
| Started | 2026-05-08T15:04:02.420442299+00:00 |
| Completed | 2026-05-08T15:26:24.077347602+00:00 |
| Tags | review-zoom, review-zoom-v9, slide10, hic, 3d, deadline, eval-scheduled |
| Eval score | 0.93 |
| └ blocking impact | 0.95 |
| └ completeness | 0.95 |
| └ coordination overhead | 0.92 |
| └ correctness | 0.92 |
| └ downstream usability | 0.95 |
| └ efficiency | 0.90 |
| └ intent fidelity | 0.81 |
| └ style adherence | 0.94 |
Description
Improve slide 10m.2 if possible. Erik says current 10m.2 is interesting but hard to see and asks whether we have a better visualization.\n\nTask:\n- Audit existing v8 10m.2 CHM13 whole-arm Hi-C contact-space MDS and v8 whole-genome GM12878 3DG candidate.\n- Search local assets first for better 3D visualizations: CHM13/HG002 MDS_3d_coords, submission_Randiak mds_3d/mds_3d_q, Dip-C 3DG projections, radial/community overlays, cross-organism overlays.\n- If a clearer visualization exists, prepare slide-ready replacement with stronger contrast, larger labels, and exact caption.\n- If none is truly better, clean/crop/annotate current 10m.2 and explain why a whole 3D genome structure plot is not feasible or not appropriate.\n- Maintain caveat: contact-space MDS vs physical single-cell reconstruction must be explicit.\n\nDeliverables: candidate inventory, best replacement PNG/PDF, README, and SLIDE_PATCH.md under slides/v2-review-zoom/_revision_assets/v9/slide10m2_better_3d_viz/.\n\nDo not edit final Typst deck directly; leave integration to review-zoom-v9-fanin-render.
Depends on
Required by
Log
- 2026-05-08T15:01:08.347831175+00:00 Task paused
- 2026-05-08T15:01:48.344539683+00:00 Task published
- 2026-05-08T15:04:02.420447259+00:00 Spawned by coordinator --executor codex --model gpt-5.5
- 2026-05-08T15:04:32.222120434+00:00 Starting asset audit for slide 10m.2 3D visualization replacement.
- 2026-05-08T15:09:22.451742124+00:00 FANOUT_DECISION: stay inline — single documentation/asset handoff with one output directory; no parallel file ownership needed.
- 2026-05-08T15:09:50.942825171+00:00 Audited v8 CHM13 whole-arm MDS, GM12878 3DG projection, HG002/Randiak MDS images, radial community overlays, and CHM13/HG002 PHR contact-space MDS comparison assets.
- 2026-05-08T15:22:44.313555726+00:00 Prepared v9 slide10m2_better_3d_viz handoff with candidate inventory, replacement PNG/PDF, reproducible R script, README, and SLIDE_PATCH.
- 2026-05-08T15:23:15.037224911+00:00 Validated: R renderer completed; PNG is 1920x1080 RGB; PDF exists; README/SLIDE_PATCH include explicit contact-space vs physical single-cell caveat.
- 2026-05-08T15:25:44.578531930+00:00 Committed and pushed: 8fd2537 — slide 10m.2 3D viz replacement handoff.
- 2026-05-08T15:26:24.077355708+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
- 2026-05-08T15:30:37.592831241+00:00 PendingEval → Done (evaluator passed; downstream unblocks)