Metadata
| Status | done |
|---|---|
| Assigned | agent-1020 |
| Agent identity | f51439356729d112a6c404803d88015d5b44832c6c584c62b96732b63c2b0c7e |
| Created | 2026-05-07T00:58:30.931721482+00:00 |
| Started | 2026-05-07T01:00:50.597785744+00:00 |
| Completed | 2026-05-07T01:11:08.446131135+00:00 |
| Tags | bog-this-week, bog-deck, review-zoom, review-zoom-v3, eval-scheduled |
| Eval score | 0.94 |
| └ blocking impact | 0.95 |
| └ completeness | 0.95 |
| └ constraint fidelity | 0.85 |
| └ coordination overhead | 0.94 |
| └ correctness | 0.95 |
| └ downstream usability | 0.96 |
| └ efficiency | 0.90 |
| └ intent fidelity | 0.87 |
| └ style adherence | 0.92 |
Description
User feedback: slide 10a appears to have inverted x/y axes relative to the community boxes.
Goal: audit and regenerate the HG002 Pore-C contact matrix so rows, columns, labels, and community boxes all refer to the same ordered arm-haplotype list.
Requirements:
- Inspect v2 slide 10a asset and generator from hic_visual_redesign.
- Read the source matrix and community table directly. Verify row names, column names, ordering, and any transpose operation.
- Regenerate a square candidate with community boxes aligned on both axes. Add a programmatic assertion that row order equals column order after any intended ordering.
- If a transpose is needed for visual convention, apply boxes after transpose so they still align.
- Use clear labels in README: rows = ..., columns = ..., boxes = sequence communities.
- Keep outputs under slides/v2-review-zoom/_revision_assets/v3/10a_axis_box_fix/.
Validation:
- README includes row/column/order checks and whether the v2 plot was transposed incorrectly.
- Candidate PNG/PDF is square and visually aligned.
- B/W value and p-value are preserved only if they match the source TSV.
Depends on
Required by
Log
- 2026-05-07T00:58:30.907497389+00:00 Task paused
- 2026-05-07T00:59:08.835953489+00:00 Task published
- 2026-05-07T00:59:30.792086168+00:00 Lightweight assignment: agent=Careful Programmer (f5143935), exec_mode=full, context_scope=task, reason=Careful Programmer best matches the correctness-critical asset regeneration and code edits needed to inspect the source matrix, verify ordering, and fix the slide output.
- 2026-05-07T01:00:50.597789952+00:00 Spawned by coordinator --executor codex --model gpt-5.5
- 2026-05-07T01:01:09.709385369+00:00 Starting axis/box audit; no unread task messages at start.
- 2026-05-07T01:01:45.028682569+00:00 Starting axis/box audit; no unread task messages at start.
- 2026-05-07T01:01:56.066190380+00:00 FANOUT_DECISION: stay inline — audit, regeneration, and validation are sequential over one asset output directory.
- 2026-05-07T01:10:01.081233050+00:00 Generated v3/10a_axis_box_fix candidate from source matrix plus arm-level sequence communities; assertions verify ordered row names equal ordered column names and B/W matches source TSV.
- 2026-05-07T01:10:26.927530927+00:00 Validated: Rscript generator reruns; PNG is 1800x1800; PDF MediaBox is 720x720; README contains row/column/order checks, B/W/p source check, and v2 transpose finding; git diff --cached --check passes. No Cargo.toml/package build config found, so cargo build/test not applicable.
- 2026-05-07T01:10:50.827776760+00:00 Committed: 9d8304d — pushed to origin/wg/agent-1020/review-zoom-v3-slide10a-axis-box-fix
- 2026-05-07T01:11:08.446140443+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
- 2026-05-07T01:15:27.112556040+00:00 PendingEval → Done (evaluator passed; downstream unblocks)