survey-integrated-interpretation

Metadata

Status	done
Assigned	`agent-663`
Agent identity	`3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647`
Created	2026-05-05T04:00:18.800999601+00:00
Started	2026-05-05T04:26:01.817099171+00:00
Completed	2026-05-05T04:31:57.512439361+00:00
Tags	`paper-prep,survey`, `eval-scheduled`
Eval score	0.93
└ blocking impact	0.96
└ completeness	0.93
└ coordination overhead	0.95
└ correctness	0.90
└ downstream usability	0.94
└ efficiency	0.95
└ intent fidelity	0.88
└ style adherence	0.92

Description

INPUT: end-to-end-report/report/07_integrated.md (read fully). CONTEXT: Nature manuscript + 15-min talk on subtelomeric sequence sharing across HPRCv2 (233 samples). Section 07 contains the convergent-evidence table, flanking paradox, meiotic bouquet model, D4Z4-CTCF-lamin model, nucleolar association, causal feedback loop, and testable predictions — likely the heart of the Discussion. TASK: Extract: (1) Key findings/claims (numbered, with metrics/links to other sections); (2) Existing figures referenced (paths); (3) Existing CSVs (paths); (4) Methods/models used; (5) Open gaps; (6) Suggested figures for Discussion (model schematics, convergent-evidence summary plot) with captions (produced-vs-todo); (7) Talk slide takeaways (likely the closing slides). OUTPUT: paper_prep/surveys/SURVEY_07_integrated.md (7 numbered sections). ACCEPTANCE: File exists, all 7 sections present, concrete paths cited.

INPUT: end-to-end-report/report/07_integrated.md (read fully).
CONTEXT: Nature manuscript + 15-min talk on subtelomeric sequence sharing across HPRCv2 (233 samples). Section 07 contains the convergent-evidence table, flanking paradox, meiotic bouquet model, D4Z4-CTCF-lamin model, nucleolar association, causal feedback loop, and testable predictions — likely the heart of the Discussion.
TASK: Extract: (1) Key findings/claims (numbered, with metrics/links to other sections); (2) Existing figures referenced (paths); (3) Existing CSVs (paths); (4) Methods/models used; (5) Open gaps; (6) Suggested figures for Discussion (model schematics, convergent-evidence summary plot) with captions (produced-vs-todo); (7) Talk slide takeaways (likely the closing slides).
OUTPUT: paper_prep/surveys/SURVEY_07_integrated.md (7 numbered sections).
ACCEPTANCE: File exists, all 7 sections present, concrete paths cited.

Depends on

done .assign-survey-integrated-interpretation

Required by

Log

2026-05-05T04:00:18.786632647+00:00 Task paused
2026-05-05T04:22:15.219184255+00:00 Task resumed
2026-05-05T04:25:58.878117987+00:00 Lightweight assignment: agent=random-agent-3577bc75 (3577bc75), exec_mode=full, context_scope=task, reason=Documenter role is optimal for survey extraction and synthesis work; verify-against-code tradeoff ensures accuracy of findings and references extraction.
2026-05-05T04:26:01.817102427+00:00 Spawned by coordinator --executor claude --model opus
2026-05-05T04:26:13.732237517+00:00 Starting survey of 07_integrated.md — reading input file and existing survey templates
2026-05-05T04:30:16.215105980+00:00 Wrote SURVEY_07_integrated.md (286 lines, 7 sections). Validated: all 7 numbered sections present, concrete paths cited (cross-references survey 01/02/04/05/06 plus /moosefs/guarracino/HPRCv2/PHR_III/ paths).
2026-05-05T04:31:41.993803105+00:00 Committed: 2070363 — pushed to remote
2026-05-05T04:31:57.512443449+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-05T04:35:32.495645249+00:00 PendingEval → Done (evaluator passed; downstream unblocks)