Metadata
| Status | done |
|---|---|
| Assigned | agent-657 |
| Agent identity | 3577bc75d6ed4f1947509aa5c086c91ce7c997c7806dab6bf6affac647452647 |
| Created | 2026-05-05T04:11:06.709736215+00:00 |
| Started | 2026-05-05T04:21:03.158689291+00:00 |
| Completed | 2026-05-05T04:28:09.884495204+00:00 |
| Tags | paper-prep,survey, eval-scheduled |
| Eval score | 0.91 |
| └ blocking impact | 0.95 |
| └ completeness | 0.95 |
| └ constraint fidelity | 0.85 |
| └ coordination overhead | 0.95 |
| └ correctness | 0.95 |
| └ downstream usability | 0.92 |
| └ efficiency | 0.90 |
| └ intent fidelity | 0.86 |
| └ style adherence | 0.88 |
Description
CONTEXT: We are preparing a Nature manuscript + 15-min talk. The repo has many figures already produced — we need a complete catalog so the synthesis architect knows what is plot-ready vs needs generation. TASK: Find ALL image/figure files (.png, .pdf, .svg, .jpg) anywhere under the project root. For each non-trivial figure produce one row in a markdown table with columns: PATH | TOPIC (which report section/topic it relates to) | CAPTION HINT (best guess from filename + nearby README/docs) | RESOLUTION/QUALITY (does it look publication-ready, draft, or exploratory) | LIKELY USE (main fig / extended / SI / talk-only / not-useful). Group rows by topic. Also write a short 'gap analysis' section noting topics from the report TOC that have NO figures yet. DO use: find, ls, file, identify (if available). Sample-read filenames in batches; do not need to open every image. For ambiguous filenames cross-check by reading nearby README files or matching paths to report sections. OUTPUT: paper_prep/surveys/SURVEY_FIG_inventory.md (markdown table grouped by topic + gap analysis). ACCEPTANCE: File exists, ≥80% of project image files cataloged, gap analysis section present.
Depends on
Required by
Log
- 2026-05-05T04:11:06.695442862+00:00 Task paused
- 2026-05-05T04:20:34.585670871+00:00 Task resumed
- 2026-05-05T04:21:00.494406397+00:00 Lightweight assignment: agent=random-agent-3577bc75 (3577bc75), exec_mode=full, context_scope=task, reason=Documenter agent best fits this inventory/documentation task; tradeoff 'verify-against-code-not-just-docs' ensures accurate cross-checking of filenames and nearby documentation.
- 2026-05-05T04:21:03.158693058+00:00 Spawned by coordinator --executor claude --model opus
- 2026-05-05T04:21:14.244114565+00:00 Starting figure inventory survey — finding all image files in repo
- 2026-05-05T04:24:19.332980407+00:00 Catalog identified: 156 image files. 91 top-level (impg coverage/identity heatmaps + 2 GSEA + rendered report PDF), 65 pedigree untangle PDFs (42 hifiasm, 20 verkko, 3 washu). No SVG/JPG. Writing inventory now.
- 2026-05-05T04:27:26.784021121+00:00 Validated: SURVEY_FIG_inventory.md exists at paper_prep/surveys/. 184 lines, 70 table rows. All 156 image files cataloged either individually (top-level: 17 unique impg/GSEA/report files, 3 WashU pedigree files) or by family pattern (73 identity heatmaps grouped by chr, 42 hifiasm + 20 verkko pedigree plots grouped by sample list). Gap analysis covers all 14 report TOC sections.
- 2026-05-05T04:28:04.124657883+00:00 Committed: 0159c0c — pushed to remote
- 2026-05-05T04:28:09.884498640+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
- 2026-05-05T04:31:26.734876790+00:00 PendingEval → Done (evaluator passed; downstream unblocks)