build-community-legend

Metadata

Status	done
Assigned	`agent-583`
Agent identity	`f51439356729d112a6c404803d88015d5b44832c6c584c62b96732b63c2b0c7e`
Created	2026-04-02T23:50:35.818545195+00:00
Started	2026-04-02T23:51:12.529246638+00:00
Completed	2026-04-02T23:52:22.712562086+00:00
Tags	`fix,component`, `eval-scheduled`
Eval score	0.88
└ blocking impact	0.95
└ completeness	0.90
└ coordination overhead	0.92
└ correctness	0.86
└ downstream usability	0.82
└ efficiency	0.88
└ intent fidelity	0.84
└ style adherence	0.91

Description

CRITICAL CONTEXT

PHR = Pseudohomologous Region.

Goal

Create the Leiden Community Key legend that will be inserted into EXECUTIVE_SUMMARY.md. Don't edit the file yet — just produce the legend as output in the task log.

Approach

Read enriched_genes_detailed_map.csv and enriched_genes_per_arm.md to extract the actual community definitions.

For each community that appears in our data, produce a row with:

Community ID (C1, C2, C3, etc.)
Number of arms
List of arms (abbreviated: just the chromosome+arm, e.g. 1p, 2q, Xq)
One-line description of what defines the community

Format as a compact markdown table. Keep arm lists short — use abbreviations like '1p' not 'chr1p'.

Validation

Every community in our gene data is represented
Arm lists match the actual data
Table is compact (no row > 100 chars)

## CRITICAL CONTEXT
**PHR = Pseudohomologous Region.**

## Goal
Create the Leiden Community Key legend that will be inserted into EXECUTIVE_SUMMARY.md. Don't edit the file yet — just produce the legend as output in the task log.

## Approach
Read `enriched_genes_detailed_map.csv` and `enriched_genes_per_arm.md` to extract the actual community definitions.

For each community that appears in our data, produce a row with:
- Community ID (C1, C2, C3, etc.)
- Number of arms
- List of arms (abbreviated: just the chromosome+arm, e.g. 1p, 2q, Xq)
- One-line description of what defines the community

Format as a compact markdown table. Keep arm lists short — use abbreviations like '1p' not 'chr1p'.

## Validation
- Every community in our gene data is represented
- Arm lists match the actual data
- Table is compact (no row > 100 chars)

Depends on

done .assign-build-community-legend

Required by

done reformat-gene-family

Log

2026-04-02T23:50:35.803384276+00:00 Task paused
2026-04-02T23:50:52.366797094+00:00 Task published
2026-04-02T23:51:12.095212524+00:00 Lightweight assignment: agent=Careful Programmer (f5143935), exec_mode=light, context_scope=task, reason=Programmer task requiring file reading and data extraction with validation; Careful Programmer's 0.83 score and 75 prior tasks provide proven accuracy for data-driven synthesis.
2026-04-02T23:51:12.529250415+00:00 Spawned by coordinator --executor claude --model claude-sonnet-4-20250514
2026-04-02T23:51:27.411463702+00:00 Starting implementation - reading data files to extract community definitions
2026-04-02T23:51:45.847842777+00:00 Analyzed data files - extracted 9 communities with arm distributions and functional patterns
2026-04-02T23:51:52.965862568+00:00 Creating compact markdown table with community definitions based on enriched gene data
2026-04-02T23:52:04.603563427+00:00 Completed community legend table - validated all 9 communities from gene data, all rows <100 chars
2026-04-02T23:52:18.132387278+00:00 Validated: all task criteria met - 9 communities mapped, arms match data, compact format
2026-04-02T23:52:22.712566214+00:00 Task marked as done