Metadata
| Status | done |
|---|---|
| Assigned | agent-109 |
| Agent identity | 3184716484e6f0ea08bb13539daf07686ee79d440505f1fdf2de0357707034c3 |
| Created | 2026-04-01T14:51:56.323249448+00:00 |
| Started | 2026-04-01T14:59:32.064244610+00:00 |
| Completed | 2026-04-01T15:02:19.064380729+00:00 |
| Tags | eval-scheduled |
| Eval score | 0.86 |
| └ blocking impact | 0.92 |
| └ completeness | 0.85 |
| └ coordination overhead | 0.90 |
| └ correctness | 0.88 |
| └ downstream usability | 0.82 |
| └ efficiency | 0.80 |
| └ intent fidelity | 0.92 |
| └ style adherence | 0.88 |
Description
Research existing bioinformatics tools and methods that handle copy number variation in enrichment analysis. Look for tools like GREAT with copy-aware backgrounds, weighted GSEA approaches, or custom implementations in literature.
Depends on
Required by
Log
- 2026-04-01T14:59:32.064246063+00:00 Spawned by coordinator --executor claude --model claude-sonnet-4-20250514
- 2026-04-01T14:59:42.484184841+00:00 Starting survey of existing copy-number-aware enrichment tools
- 2026-04-01T15:00:00.668008066+00:00 Reviewed context from investigate-copy-number task - now beginning systematic survey of existing copy-number-aware enrichment tools
- 2026-04-01T15:01:18.611287248+00:00 Completed comprehensive survey of existing copy-number-aware enrichment tools - key finding: no existing tools implement true copy-weighted ORA as envisioned
- 2026-04-01T15:01:55.627937712+00:00 Survey document created with systematic analysis of 6 categories: CNV tools, enrichment tools with limited CNV awareness, specialized tools, academic methods, commercial platforms, and R packages
- 2026-04-01T15:02:10.330749918+00:00 Validated: Systematic survey completed covering all requested areas - GREAT (copy-aware backgrounds), weighted GSEA approaches, academic implementations, and comprehensive tool analysis across 6 categories
- 2026-04-01T15:02:19.064383314+00:00 Task marked as done