fix-m2-26-disambiguate

Metadata

Status	done
Assigned	`agent-156`
Agent identity	`3184716484e6f0ea08bb13539daf07686ee79d440505f1fdf2de0357707034c3`
Created	2026-05-01T23:25:25.227784950+00:00
Started	2026-05-01T23:29:51.072635979+00:00
Completed	2026-05-01T23:34:27.270302585+00:00
Tags	`grant,urgent,v3,fix,must-fix`, `eval-scheduled`
Eval score	0.87
└ blocking impact	1.00
└ completeness	1.00
└ constraint fidelity	0.85
└ coordination overhead	1.00
└ correctness	0.92
└ downstream usability	0.92
└ efficiency	0.88
└ intent fidelity	0.81
└ style adherence	0.96

Description

This is a TARGETED fix task: address ONE specific panel criticism by producing a structured fix spec. The assembler will apply all specs deterministically to v3 → v3.1.

Read criticism source: ~/poietic.life/notes/v3-review-synthesis-20260501.md Read current v3: git show 70c8e7f:workgraph_google_application_FINAL_v3.md (worktree branch wg/agent-77/v3-assemble-stitch) Read CLAUDE.md word limits.

Output

~/poietic.life/notes/v3-fixes/fix-XXX.md with sections:

Criticism (verbatim from synthesis)
Target section + word cap
Current text (verbatim from v3)
Proposed text (your fix)
Word count check (before / after / cap)
Rationale (one paragraph: why this fix lands the criticism)

Constraints

Word cap respected (recount).
No em-dashes, no PI language, no v1 terms, no recursion claim.
CRISPRme/Casgevy framing precise. DNA-Diffusion not in funded scope.
Founder order Erik / Luca / Vaughn.
Do NOT edit v3 directly. Only produce the spec.

This fix

Criticism (M2): §26 says 'Garrison created vg (Nature Methods 2024; ~72,000 citations)' which conflates: the 2024 PGGB Methods paper, the 2018 vg Nat Biotech paper, and a Scholar-corpus aggregate citation count. Domain expert flagged this as factually loose.

Target: §26 (150w cap)

Action: Reword to: 'Garrison created vg (Nat Biotechnol 2018), built PGGB used by the Human Pangenome Reference Consortium (Nat Methods 2024), with ~72,000 Google Scholar citations across the toolkit'. Spec must show before (current §26 text containing the conflated phrase) and after, plus word recount of full §26.

Output: ~/poietic.life/notes/v3-fixes/fix-m2.md

## Description

This is a TARGETED fix task: address ONE specific panel criticism by producing a structured fix spec. The assembler will apply all specs deterministically to v3 → v3.1.

Read criticism source: `~/poietic.life/notes/v3-review-synthesis-20260501.md`
Read current v3: `git show 70c8e7f:workgraph_google_application_FINAL_v3.md` (worktree branch `wg/agent-77/v3-assemble-stitch`)
Read CLAUDE.md word limits.

## Output

`~/poietic.life/notes/v3-fixes/fix-XXX.md` with sections:
- **Criticism** (verbatim from synthesis)
- **Target section + word cap**
- **Current text** (verbatim from v3)
- **Proposed text** (your fix)
- **Word count check** (before / after / cap)
- **Rationale** (one paragraph: why this fix lands the criticism)

## Constraints
- Word cap respected (recount).
- No em-dashes, no PI language, no v1 terms, no recursion claim.
- CRISPRme/Casgevy framing precise. DNA-Diffusion not in funded scope.
- Founder order Erik / Luca / Vaughn.
- Do NOT edit v3 directly. Only produce the spec.

## This fix
**Criticism (M2):** §26 says 'Garrison created vg (Nature Methods 2024; ~72,000 citations)' which conflates: the 2024 PGGB Methods paper, the 2018 vg Nat Biotech paper, and a Scholar-corpus aggregate citation count. Domain expert flagged this as factually loose.

**Target:** §26 (150w cap)

**Action:** Reword to: 'Garrison created vg (Nat Biotechnol 2018), built PGGB used by the Human Pangenome Reference Consortium (Nat Methods 2024), with ~72,000 Google Scholar citations across the toolkit'. Spec must show before (current §26 text containing the conflated phrase) and after, plus word recount of full §26.

**Output:** `~/poietic.life/notes/v3-fixes/fix-m2.md`

Depends on

done .assign-fix-m2-26-disambiguate

Required by

Log

2026-05-01T23:25:25.225807961+00:00 Task paused
2026-05-01T23:27:52.428721494+00:00 Task published
2026-05-01T23:29:51.072640167+00:00 Spawned by coordinator --executor claude --model opus
2026-05-01T23:30:21.646582670+00:00 Starting fix spec for M2: §26 vg/PGGB citation disambiguation
2026-05-01T23:34:08.270291099+00:00 Validated: §26 word counts (current 148, proposed 147, cap 150). Disambiguates vg (Nat Biotechnol 2018) / PGGB (Nat Methods 2024) / Scholar aggregate (~72,000). All constraint checks pass. Spec written, do-not-edit-v3-directly observed.
2026-05-01T23:34:24.498673451+00:00 Committed: 1202e30 pushed to poietic.life remote
2026-05-01T23:34:27.270309057+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
2026-05-01T23:38:44.632993952+00:00 PendingEval → Done (evaluator passed; downstream unblocks)