Metadata
| Status | done |
|---|---|
| Assigned | agent-31 |
| Agent identity | 3184716484e6f0ea08bb13539daf07686ee79d440505f1fdf2de0357707034c3 |
| Created | 2026-05-02T01:41:21.658160372+00:00 |
| Started | 2026-05-02T01:41:44.748872667+00:00 |
| Completed | 2026-05-02T01:43:12.034906451+00:00 |
| Tags | landing, founders, research, erik, eval-scheduled |
| Eval score | 0.89 |
| └ blocking impact | 0.94 |
| └ completeness | 0.86 |
| └ constraint fidelity | 0.85 |
| └ coordination overhead | 0.92 |
| └ correctness | 0.91 |
| └ downstream usability | 0.82 |
| └ efficiency | 0.95 |
| └ intent fidelity | 0.77 |
| └ style adherence | 0.90 |
Description
Research a restrained founder-card framing for Erik Garrison that subtly conveys sustained open-source scientific infrastructure leadership and hybrid/distributed human collaboration without saying that explicitly. Verify and include freebayes, vg, PGGB, PHR/Robertsonian work, and relevant DOI/repo links. Deliver concise verified facts and 2-3 candidate landing-page bio phrasings. Do not edit files.
Depends on
Required by
Log
- 2026-05-02T01:41:38.890979350+00:00 Lightweight assignment: agent=Default Evaluator (31847164), exec_mode=light, context_scope=task, reason=Default Evaluator is the closest fit for a verification-heavy research task that needs careful fact synthesis without file edits.
- 2026-05-02T01:41:44.748875081+00:00 Spawned by coordinator --executor codex --model gpt-5.5
- 2026-05-02T01:42:03.152143103+00:00 Evaluator starting: inspecting task state, artifacts, and validation criteria
- 2026-05-02T01:42:40.487495547+00:00 Research verified from primary/near-primary sources: freebayes repo/arXiv; vg Nature Biotechnology/repo; PGGB Nature Methods/repo; Robertsonian Nature 2025 and Genome Informatics note; HPRC/NIH role context. Preparing concise facts and candidate landing-page phrasings without editing files.
- 2026-05-02T01:42:53.071640172+00:00 DELIVERABLE: Verified facts: (1) freebayes is a Bayesian haplotype-based variant detector; freebayes repo says it is maintained by Erik Garrison and Pjotr Prins and cites Garrison & Marth arXiv:1207.3907 / DOI 10.48550/arXiv.1207.3907. Repo: https://github.com/freebayes/freebayes. (2) vg paper: Garrison, Siren, Novak et al., Nature Biotechnology 36:875-879 (2018), DOI 10.1038/nbt.4227; repo https://github.com/vgteam/vg. (3) PGGB: Garrison and Guarracino co-first in Nature Methods 21:2008-2012 (2024), DOI 10.1038/s41592-024-02430-3; repo https://github.com/pangenome/pggb; article says PGGB is available there and uses all-to-all alignments to build variation graphs. (4) PHR/Robertsonian: Nature article The formation and propagation of human Robertsonian chromosomes, published 2025-09-24, includes Erik Garrison as author, DOI 10.1038/s41586-025-09540-8; identifies SST1 in PHRs on chromosomes 13,14,21 as common breakpoint context for Robertsonian translocations. (5) NIH/NHGRI HPRC media advisory lists Erik Garrison, PhD, as assistant professor at UTHSC and HPRC paper author/participant. Candidate bios: A. Erik Garrison builds the graph-based tools and references that let genome science work across many genomes at once, from FreeBayes and vg to PGGB and recent work resolving human Robertsonian chromosomes. B. Erik Garrison develops practical systems for reading genomes as shared structure: FreeBayes, vg, PGGB, and pangenome analyses that connect variant discovery, reference design, and chromosome biology. C. Erik Garrison's work turns genome diversity into usable infrastructure, spanning haplotype-based variant calling, variation graphs, pangenome graph construction, and telomere-to-telomere studies of Robertsonian chromosomes.
- 2026-05-02T01:43:08.289213186+00:00 Validated: task-specific criteria met via verified source review; no workspace files edited per explicit instruction; no build/test needed for research-only task.
- 2026-05-02T01:43:12.034914726+00:00 Task pending eval (agent reported done; awaiting `.evaluate-*` to score)
- 2026-05-02T01:43:44.820940927+00:00 PendingEval → Done (evaluator passed; downstream unblocks)